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Volumn 27, Issue 3-4, 2003, Pages 79-84

Biomarker discovery by tissue microdissection and ProteinChip® array analysis

Author keywords

Bioinformatics; Biomarker; Microdissection; ProteinChip Arrays; SELDI; Tumor

Indexed keywords

BIOLOGICAL MARKER;

EID: 0038354751     PISSN: 03423026     EISSN: None     Source Type: Journal    
DOI: 10.1515/LabMed.2003.013     Document Type: Review
Times cited : (7)

References (49)
  • 1
    • 0016637146 scopus 로고
    • Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals
    • Klose J. Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals. Humangenetik 1975;26(3):231-243.
    • (1975) Humangenetik , vol.26 , Issue.3 , pp. 231-243
    • Klose, J.1
  • 3
    • 0032901252 scopus 로고    scopus 로고
    • High sensitivity mass spectrometric methods for obtaining intact molecular weights from gel-separated proteins
    • Loo JA, Brown J, Critchley G, Mitchell C, Andrews PC, Ogorzalek LR. High sensitivity mass spectrometric methods for obtaining intact molecular weights from gel-separated proteins. Electrophoresis 1999;20(4-5):743-748.
    • (1999) Electrophoresis , vol.20 , Issue.4-5 , pp. 743-748
    • Loo, J.A.1    Brown, J.2    Critchley, G.3    Mitchell, C.4    Andrews, P.C.5    Ogorzalek, L.R.6
  • 4
    • 0033918391 scopus 로고    scopus 로고
    • Mass spectrometry: A tool for the identification of proteins separated by gels
    • Lahm HW, Langen H. Mass spectrometry: A tool for the identification of proteins separated by gels. Electrophoresis 2000;21(11):2105-2114.
    • (2000) Electrophoresis , vol.21 , Issue.11 , pp. 2105-2114
    • Lahm, H.W.1    Langen, H.2
  • 5
    • 0032785107 scopus 로고    scopus 로고
    • Profiling of amyloid beta peptide variants using SELDI ProteinChip (R) arrays
    • Davies H, Lomas L, Austen B. Profiling of amyloid beta peptide variants using SELDI ProteinChip (R) arrays. Biotechniques 1999;27(6):1258-1261.
    • (1999) Biotechniques , vol.27 , Issue.6 , pp. 1258-1261
    • Davies, H.1    Lomas, L.2    Austen, B.3
  • 6
    • 0011063449 scopus 로고    scopus 로고
    • Proteinchip® surface enhanced laser desorption/ionization (SELDI) mass spectrometry: A novel protein biochip technology for detection of prostate cancer biomarkers in complex protein mixtures
    • Wright GL, Cazares LH, Leung SM, Nasim S, Adam BL, Yip TT et al. Proteinchip® surface enhanced laser desorption/ionization (SELDI) mass spectrometry: a novel protein biochip technology for detection of prostate cancer biomarkers in complex protein mixtures. PROSTATE CANCER AND PROSTATIC DISEASES 1999;2(5-6):264-276.
    • (1999) Prostate Cancer and Prostatic Diseases , vol.2 , Issue.5-6 , pp. 264-276
    • Wright, G.L.1    Cazares, L.H.2    Leung, S.M.3    Nasim, S.4    Adam, B.L.5    Yip, T.T.6
  • 7
    • 0034013944 scopus 로고    scopus 로고
    • Recent advancements in surface-enhanced laser desorption/ionization-time of flight-mass spectrometry
    • Merchant M, Weinberger SR. Recent advancements in surface-enhanced laser desorption/ionization-time of flight-mass spectrometry. Electrophoresis 2000;21(6):1164-1177.
    • (2000) Electrophoresis , vol.21 , Issue.6 , pp. 1164-1177
    • Merchant, M.1    Weinberger, S.R.2
  • 8
    • 84990629710 scopus 로고
    • New desorption strategies for the mass spectrometric analysis of macromolecules
    • Hutchens TW, Yip TT. New desorption strategies for the mass spectrometric analysis of macromolecules. Rapid Commun Mass Spectrom 1993;7:576-580.
    • (1993) Rapid Commun Mass Spectrom , vol.7 , pp. 576-580
    • Hutchens, T.W.1    Yip, T.T.2
  • 9
    • 0031879859 scopus 로고    scopus 로고
    • Identification of expressed genes by laser-mediated manipulation of single cells
    • Schutze K, Lahr G. Identification of expressed genes by laser-mediated manipulation of single cells [see comments]. Nat Biotechnol 1998;16(8):737-742.
    • (1998) Nat Biotechnol , vol.16 , Issue.8 , pp. 737-742
    • Schutze, K.1    Lahr, G.2
  • 10
    • 0033748172 scopus 로고    scopus 로고
    • Tissue-Specific Microdissection coupled with ProteinChip Array Technologies: Applications in Cancer Research
    • von Eggeling F, Davies H, Lomas L, Fiedler W, Junker K, Claussen U et al. Tissue-Specific Microdissection coupled with ProteinChip Array Technologies: Applications in Cancer Research. Biotechniques 2000;(29):1066-1070.
    • (2000) Biotechniques , Issue.29 , pp. 1066-1070
    • Von Eggeling, F.1    Davies, H.2    Lomas, L.3    Fiedler, W.4    Junker, K.5    Claussen, U.6
  • 12
    • 0035487926 scopus 로고    scopus 로고
    • Laser capture microdissection and proteomics: Possibilities and limitation
    • Craven RA, Banks RE. Laser capture microdissection and proteomics: possibilities and limitation. Proteomics 2001;1(10):1200-1204.
    • (2001) Proteomics , vol.1 , Issue.10 , pp. 1200-1204
    • Craven, R.A.1    Banks, R.E.2
  • 15
    • 0345186609 scopus 로고    scopus 로고
    • DNA affinity capture and protein profiling by SELDI-TOF mass spectrometry: Effect of DNA methylation
    • Bane TK, LeBlanc JF, Lee TD, Riggs AD. DNA affinity capture and protein profiling by SELDI-TOF mass spectrometry: effect of DNA methylation. Nucleic Acids Res 2002;30(14):e69.
    • (2002) Nucleic Acids Res , vol.30 , Issue.14
    • Bane, T.K.1    LeBlanc, J.F.2    Lee, T.D.3    Riggs, A.D.4
  • 16
    • 18444387979 scopus 로고    scopus 로고
    • Purification and characterization of the mammaglobin/lipophilin B complex, a promising diagnostic marker for breast cancer
    • Carter D, Douglass JF, Cornellison CD, Retter MW, Johnson JC, Bennington AA et al. Purification and characterization of the mammaglobin/lipophilin B complex, a promising diagnostic marker for breast cancer. Biochemistry 2002;41(21):6714-6722.
    • (2002) Biochemistry , vol.41 , Issue.21 , pp. 6714-6722
    • Carter, D.1    Douglass, J.F.2    Cornellison, C.D.3    Retter, M.W.4    Johnson, J.C.5    Bennington, A.A.6
  • 18
    • 0033016717 scopus 로고    scopus 로고
    • Correlation between protein and mRNA abundance in yeast
    • Gygi SP, Rochon Y, Franza BR, Aebersold R. Correlation between protein and mRNA abundance in yeast. Mol Cell Biol 1999;19(3):1720-1730.
    • (1999) Mol Cell Biol , vol.19 , Issue.3 , pp. 1720-1730
    • Gygi, S.P.1    Rochon, Y.2    Franza, B.R.3    Aebersold, R.4
  • 19
    • 0037050026 scopus 로고    scopus 로고
    • Functional organization of the yeast proteome by systematic analysis of protein complexes
    • Gavin AC, Bosche M, Krause R, Grandi P, Marzioch M, Bauer A et al. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 2002;415(6868):141-147.
    • (2002) Nature , vol.415 , Issue.6868 , pp. 141-147
    • Gavin, A.C.1    Bosche, M.2    Krause, R.3    Grandi, P.4    Marzioch, M.5    Bauer, A.6
  • 20
    • 0038439233 scopus 로고    scopus 로고
    • The ProteinChip® system in biomedical research
    • Wiesner A. The ProteinChip® System in Biomedical Research. JLM 2003;27(3/4):85-91.
    • (2003) JLM , vol.27 , Issue.3-4 , pp. 85-91
    • Wiesner, A.1
  • 21
    • 0034659815 scopus 로고    scopus 로고
    • Proteomics to study genes and genomes
    • Pandey A, Mann M. Proteomics to study genes and genomes. Nature 2000;405(6788):837-846.
    • (2000) Nature , vol.405 , Issue.6788 , pp. 837-846
    • Pandey, A.1    Mann, M.2
  • 24
    • 0024289037 scopus 로고
    • Laser desorption ionization of proteins with molecular masses exceeding 10000 daltons
    • Karas M, Hillenkamp F. Laser Desorption Ionization of Proteins with Molecular Masses Exceeding 10000 Daltons. Analytical Chemistry 1988;60(20):2299-2301.
    • (1988) Analytical Chemistry , vol.60 , Issue.20 , pp. 2299-2301
    • Karas, M.1    Hillenkamp, F.2
  • 25
    • 0032979179 scopus 로고    scopus 로고
    • Protein analysis by mass spectrometry and sequence database searching: Tools for cancer research in the post-genomic era
    • Gygi SP, Han DKM, Gingras AC, Sonenberg N, Aebersold R. Protein analysis by mass spectrometry and sequence database searching: Tools for cancer research in the post-genomic era. Electrophoresis 1999;20(2):310-319.
    • (1999) Electrophoresis , vol.20 , Issue.2 , pp. 310-319
    • Gygi, S.P.1    Han, D.K.M.2    Gingras, A.C.3    Sonenberg, N.4    Aebersold, R.5
  • 26
    • 0033238005 scopus 로고    scopus 로고
    • Automated mass spectrometry imaging with a matrix-assisted laser desorption ionization time-of-flight instrument
    • Stoeckli M, Farmer TB, Caprioli RM. Automated mass spectrometry imaging with a matrix-assisted laser desorption ionization time-of-flight instrument. Journal of the American Society for Mass Spectrometry 1999;10(1):67-71.
    • (1999) Journal of the American Society for Mass Spectrometry , vol.10 , Issue.1 , pp. 67-71
    • Stoeckli, M.1    Farmer, T.B.2    Caprioli, R.M.3
  • 27
    • 0035824486 scopus 로고    scopus 로고
    • Protein chips - Searching for recipes for protein chips
    • Service RF. Protein chips - Searching for recipes for protein chips. Science 2001;294(5549):2080-2082.
    • (2001) Science , vol.294 , Issue.5549 , pp. 2080-2082
    • Service, R.F.1
  • 28
  • 29
    • 0032787281 scopus 로고    scopus 로고
    • Tissue microarrays for gene amplification surveys in many different tumor types
    • Schraml P, Kononen J, Bubendorf L, Moch H, Bissig H, Nocito A et al. Tissue microarrays for gene amplification surveys in many different tumor types. Clin Cancer Res 1999;5(8):1966-1975.
    • (1999) Clin Cancer Res , vol.5 , Issue.8 , pp. 1966-1975
    • Schraml, P.1    Kononen, J.2    Bubendorf, L.3    Moch, H.4    Bissig, H.5    Nocito, A.6
  • 31
    • 0012741495 scopus 로고    scopus 로고
    • Proteomic patterns in serum and identification of ovarian cancer - Reply
    • Petricoin EF, Mills GB, Kohn EC, Liotta LA. Proteomic patterns in serum and identification of ovarian cancer - Reply. Lancet 2002;360(9327):170-171.
    • (2002) Lancet , vol.360 , Issue.9327 , pp. 170-171
    • Petricoin, E.F.1    Mills, G.B.2    Kohn, E.C.3    Liotta, L.A.4
  • 32
    • 0035074699 scopus 로고    scopus 로고
    • Development of a novel proteomic approach for the detection of transitional cell carcinoma of the bladder in urine
    • Vlahou A, Schellhammer PF, Mendrinos S, Patel K, Kondylis FI, Gong L et al. Development of a novel proteomic approach for the detection of transitional cell carcinoma of the bladder in urine. Am J Pathol 2001;158(4):1491-1502.
    • (2001) Am J Pathol , vol.158 , Issue.4 , pp. 1491-1502
    • Vlahou, A.1    Schellhammer, P.F.2    Mendrinos, S.3    Patel, K.4    Kondylis, F.I.5    Gong, L.6
  • 33
    • 0035666963 scopus 로고    scopus 로고
    • Proteomic patterns of nipple aspirate fluids obtained by SELDI-TOF: Potential for new biomarkers to aid in the diagnosis of breast cancer
    • Paweletz CP, Trock B, Pennanen M, Tsangaris T, Magnant C, Liotta LA et al. Proteomic patterns of nipple aspirate fluids obtained by SELDI-TOF: potential for new biomarkers to aid in the diagnosis of breast cancer. Dis Markers 2001;17(4):301-307.
    • (2001) Dis Markers , vol.17 , Issue.4 , pp. 301-307
    • Paweletz, C.P.1    Trock, B.2    Pennanen, M.3    Tsangaris, T.4    Magnant, C.5    Liotta, L.A.6
  • 34
    • 0037086181 scopus 로고    scopus 로고
    • Identification of hepatocarcinoma-intestine-pancreas/pancreatitis-associated protein I as a biomarker for pancreatic ductal adenocarcinoma by protein biochip technology
    • Rosty C, Christa L, Kuzdzal S, Baldwin WM, Zahurak ML, Carnot F et al. Identification of hepatocarcinoma-intestine-pancreas/pancreatitis-associated protein I as a biomarker for pancreatic ductal adenocarcinoma by protein biochip technology. Cancer Res 2002;62(6):1868-1875.
    • (2002) Cancer Res , vol.62 , Issue.6 , pp. 1868-1875
    • Rosty, C.1    Christa, L.2    Kuzdzal, S.3    Baldwin, W.M.4    Zahurak, M.L.5    Carnot, F.6
  • 35
    • 0036280779 scopus 로고    scopus 로고
    • Identification and validation of metastasis-associated proteins in head and neck cancer cell lines by two-dimensional electrophoresis and mass spectrometry
    • Wu WG, Tang XM, Hu W, Lotan R, Hong WK, Mao L. Identification and validation of metastasis-associated proteins in head and neck cancer cell lines by two-dimensional electrophoresis and mass spectrometry. Clinical & Experimental Metastasis 2002;19(4):319-326.
    • (2002) Clinical & Experimental Metastasis , vol.19 , Issue.4 , pp. 319-326
    • Wu, W.G.1    Tang, X.M.2    Hu, W.3    Lotan, R.4    Hong, W.K.5    Mao, L.6
  • 36
    • 0033975643 scopus 로고    scopus 로고
    • Characterization of intracellular prostate-specific antigen from laser capture microdissected benign and malignant prostatic epithelium
    • Ornstein DK, Englert C, Gillespie JW, Paweletz CP, LINEHAN WM, Emmert-Buck MR et al. Characterization of intracellular prostate-specific antigen from laser capture microdissected benign and malignant prostatic epithelium. Clinical Cancer Research 2000;6(2):353-356.
    • (2000) Clinical Cancer Research , vol.6 , Issue.2 , pp. 353-356
    • Ornstein, D.K.1    Englert, C.2    Gillespie, J.W.3    Paweletz, C.P.4    Linehan, W.M.5    Emmert-Buck, M.R.6
  • 37
    • 0024512337 scopus 로고
    • Cloning defined regions of the human genome by microdissection of banded chromosomes and enzymatic amplification
    • Ludecke HJ, Senger G, Claussen U, Horsthemke B. Cloning defined regions of the human genome by microdissection of banded chromosomes and enzymatic amplification. Nature 1989;338(6213):348-350.
    • (1989) Nature , vol.338 , Issue.6213 , pp. 348-350
    • Ludecke, H.J.1    Senger, G.2    Claussen, U.3    Horsthemke, B.4
  • 38
    • 0031879859 scopus 로고    scopus 로고
    • Identification of expressed genes by laser-mediated manipulation of single cells
    • Schütze K, Lahr G. Identification of expressed genes by laser-mediated manipulation of single cells [see comments]. Nat Biotechnol 1998;16(8):737-742.
    • (1998) Nat Biotechnol , vol.16 , Issue.8 , pp. 737-742
    • Schütze, K.1    Lahr, G.2
  • 44
    • 0036550241 scopus 로고    scopus 로고
    • Analysis of microdissected prostate tissue with ProteinChip (R) arrays - A way to new insights into carcinogenesis and to diagnostic tools
    • Wellmann A, Wollscheid V, Lu H, Ma ZL, Albers P, Schutze K et al. Analysis of microdissected prostate tissue with ProteinChip (R) arrays - a way to new insights into carcinogenesis and to diagnostic tools. International Journal Of Molecular Medicine 2002;9(4):341-347.
    • (2002) International Journal of Molecular Medicine , vol.9 , Issue.4 , pp. 341-347
    • Wellmann, A.1    Wollscheid, V.2    Lu, H.3    Ma, Z.L.4    Albers, P.5    Schutze, K.6
  • 45
    • 0036320522 scopus 로고    scopus 로고
    • Cancer biomarkers: Easier said than done
    • Pritzker KPH. Cancer biomarkers: Easier said than done. Clinical Chemistry 2002;48(8):1147-1150.
    • (2002) Clinical Chemistry , vol.48 , Issue.8 , pp. 1147-1150
    • Pritzker, K.P.H.1
  • 46
    • 0036130648 scopus 로고    scopus 로고
    • ProteinChip (R) clinical proteomics: Computational challenges and solutions
    • Fung ET, Enderwick C. ProteinChip (R) clinical proteomics: Computational challenges and solutions. Biotechniques 2002;34-40.
    • (2002) Biotechniques , pp. 34-40
    • Fung, E.T.1    Enderwick, C.2
  • 47
    • 0033569406 scopus 로고    scopus 로고
    • Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
    • Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 1999;286(5439):531-537.
    • (1999) Science , vol.286 , Issue.5439 , pp. 531-537
    • Golub, T.R.1    Slonim, D.K.2    Tamayo, P.3    Huard, C.4    Gaasenbeek, M.5    Mesirov, J.P.6
  • 48
    • 0036324715 scopus 로고    scopus 로고
    • Proteomics and bioinformatics approaches for identification of serum biomarkers to detect breast cancer
    • Li J, Zhang Z, Rosenzweig J, Wang YY, Chan DW. Proteomics and bioinformatics approaches for identification of serum biomarkers to detect breast cancer. Clin Chem 2002;48(8):1296-1304.
    • (2002) Clin Chem , vol.48 , Issue.8 , pp. 1296-1304
    • Li, J.1    Zhang, Z.2    Rosenzweig, J.3    Wang, Y.Y.4    Chan, D.W.5
  • 49
    • 0347079826 scopus 로고    scopus 로고
    • Analysis of molecular profile data using generative and discriminative methods
    • Moler EJ, Chow ML, Mian IS. Analysis of molecular profile data using generative and discriminative methods. Physiol Genomics 2000;4(2):109-126.
    • (2000) Physiol Genomics , vol.4 , Issue.2 , pp. 109-126
    • Moler, E.J.1    Chow, M.L.2    Mian, I.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.