Marker-assisted estimation of quantitative genetic parameters in rainbow trout, Oncorhynchus mykiss

Genetical Research

Volumn 81, Issue 2, 2003, Pages 145-156

  Wilson, A J ^a   McDonald, G ^a   Moghadam, H K ^a   Herbinger, C M ^b   Ferguson, M M ^a  

^a UNIVERSITY OF GUELPH   (Canada)

^b DALHOUSIE UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; AQUACULTURE; ARTICLE; BODY SIZE; CONTROLLED STUDY; COVARIANCE; GENETIC MARKER; GENETIC PARAMETERS; GENETIC VARIABILITY; MONTE CARLO METHOD; NONHUMAN; PEDIGREE ANALYSIS; POPULATION GENETICS; PROBABILITY; QUANTITATIVE GENETICS; RAINBOW TROUT; REGRESSION ANALYSIS; SIBLING; SPAWNING; STATISTICAL MODEL;

ANIMALS; DATA INTERPRETATION, STATISTICAL; FEMALE; GENETIC MARKERS; MALE; MARKOV CHAINS; MONTE CARLO METHOD; ONCORHYNCHUS MYKISS; PEDIGREE; QUANTITATIVE TRAIT LOCI; REGRESSION ANALYSIS;

ONCORHYNCHUS; ONCORHYNCHUS MYKISS; SALMONIDAE;

EID: 0038274095     PISSN: 00166723     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0016672302006055     Document Type: Article

References (35)

1. Almudevar, A. & Field, C. (1999). Estimation of single generation sibling relationships based on DNA markers. Journal of Agricultural, Biological, and Environmental Statistics 4, 136-165.
2. Bardakci, F. & Skibinski, D. O. F. (1994). Applications of the RAPD technique in tilapia fish; species and subspecies identification. Heredity 73, 117-123.
3. Cadée, N. (2000). Genetic and environmental effects on morphology and fluctuating asymmetry in nesting barn swallows. Journal of Evolutionary Biology 13, 359-370.
4. Cheverud, J. M. (1988). A comparison of genetic and phenotypic correlations. Evolution 42, 958-968.
5. Danzmann, R. G. (1997). PROBMAX: A computer program for assigning unknown parentage in pedigree analysis from known genotypic pools of parents and progeny. Journal of Heredity 88, 333.
6. Falconer, D. S. & Mackay, T. F. C. (1996). Introduction to Quantitative Genetics. 4th edn. New York: Longman.
7. Fishback, A. G., Danzmann, R. G., Sakamoto, T. & Ferguson, M. M. (1999). Optimization of semi-automated microsatellite multiplex polymerase chain reaction systems for rainbow trout (Oncorhynchus mykiss). Aquaculture 172, 247-255.
8. Groeneveld, E. (1994). REML VCE - a multivariate multi-model restricted maximum likelihood (co)variance component estimation package. In: Proceedings of an EC symposium on application of mixed linear models in the prediction of genetic merit in pigs. Ed. Groeneveld, E.
9. Groeneveld, E. & Kovac, M. (1990). A generalized computing procedure for setting up and solving mixed linear models. Journal of Dairy Science 73, 513-531.
10. Hansson, B., Bensch, S., Hasselquist, D., Lillandt, B. G., Wennerberg, L. & Von Schantz, T. (2000). Increase of genetic variation over time in a recently founded population of great reed warblers (Acrocephalus aruninaceus) revealed by microsatellites and DNA fingerprinting. Molecular Ecology 9, 1529-1538.
11. King, R. B., Milstead, W. B., Gibbs, H. L., Prosser, M. R., Burghardt, G. M. & McCracken, G. F. (2001). Application of microsatellite DNA markers to discriminate between maternal and genetic effects on scalation and behavior in multiply-sired garter snake litters. Canadian Journal of Zoology 79, 121-128.
12. Kruuk, L. E. B., Clutton-Brock, T. H., Slate, J., Pemberton, J. M., Brotherstone, S. & Guinness, F. E. (2000). Heritability of fitness in a wild mammal population. Proceedings of the National Academy of Sciences of the USA 97, 698-703.
13. Lynch, M. & Ritland, K. (1999). Estimation of pairwise relatedness with molecular markers. Heredity 80, 218-224.
14. Lynch M. & Walsh B. (1998). Genetics and analysis of Quantitative Traits. Sunderland: Sinauer Associates.
15. Marshall, T. C., Slate, J., Kruuk, L. E. B. & Pemberton, J. M. (1998). Statistical confidence for likelihood-based paternity inference in natural populations. Molecular Ecology 7, 639-655.
16. McDonald, G. (2001). Relatedness determination and detection of spawning time QTL in rainbow trout (Oncorhynchus mykiss). M.Sc. thesis, University of Guelph, Guelph, ON.
17. Merilä, J., Przybylo, R. & Sheldon, B. C. (1999). Genetic variation and natural selection on blue tit body condition in different environments. Genetical Research 73, 165-176.
18. Mousseau, T.A., Ritland, K. & Heath, D. D. (1998). A novel method for estimating heritability using molecular markers. Heredity 80, 218-224.
19. Painter, I. (1997). Sibship reconstruction without parental information. Journal of Agricultural, Biological, and Environmental Statistics 2, 212-229.
20. Queller, D. C. & Goodnight, K. F. (1989). Estimating relatedness using genetic markers. Evolution 43, 258-275.
21. Quinton, C. D. (2001). Growth rate and spawning time in diallele crosses of three strains of rainbow trout (Oncorhynchus mykiss). M.Sc. thesis, University of Guelph, Guelph, ON.
22. Qvarnström, A. (1999). Genotype-by-environment interactions in the determination of the size of a secondary sexual character in the collared flycatcher (Ficedula albicollis). Evolution 53, 1564-1572.
23. Riska, B., Prout, T. & Turelli, M. (1989). Laboratory estimates of heritabilities and genetic correlations in nature. Genetics 123, 865-871.
24. Ritland, K. (1996a). Estimators for pairwise relatedness and individual inbreeding coefficients. Genetical Research 67, 175-185.
25. Ritland, K. (1996b). Marker-based method for inferences about quantitative inheritance in natural populations. Evolution 50, 1062-1073.
26. Ritland, K. (2000). Marker-inferred relatedness as a tool for detecting heritability in nature. Molecular Ecology 9, 1195-1204.
27. Ritland, K. & Ritland, C. (1996). Inferences about quantitative inheritance based on natural population structure in the yellow monkeyflower, Mimulus guttatus. Evolution 50, 1074-1082.
28. Smith, B. R., Herbinger, C. M. & Merry, H. R. (2001). Accurate partition of individuals into full-sib families from genetic data without parental information. Genetics 158, 1329-1338.
29. Thomas, S. C. & Hill, W. G. (2000). Estimating quantitative genetic parameters using sibships reconstructed from marker data. Genetics 155, 1961-1972.
30. Thomas, S. C. & Hill, W. G. (2002). Sibship reconstruction in hierarchical population structures using Markov chain Monte Carlo techniques. Genetical Research 79, 227-234.
31. Thomas, S. C., Pemberton, J. M. & Hill, W. G. (2000). Estimating variance components in natural populations using inferred relationships. Heredity 84, 427-436.
32. Thomas, S. C., Coltman, D. W. & Pemberton, J. M. (2002). The use of marker-based relationship information to estimate the heritability of body weight in a natural population: a cautionary tale. Journal of Evolutionary Biology 15, 92-99.
33. Van de Casteele, T., Galbusera, P. & Matthysen, E. (2001). A comparison of microsatellite-based pairwise relatedness estimators. Molecular Ecology 10, 1539-1549.
34. Weigensberg, I. & Roff, D. A. (1996). Natural heritabilities: can they be reliably estimated in the laboratory? Evolution 50, 2149-2157.
35. Wilson, A. J. & Ferguson, M. M. (2002). Molecular pedigree analysis in natural populations of fishes: approaches, applications, and practical considerations. Canadian Journal of Fisheries and Aquatic Sciences. In press.