Proteomics technology

Journal of Clinical Ligand Assay

Volumn 25, Issue 3, 2002, Pages 242-252

  Westermeier, Reiner ^a   Loyland, Stacey ^a   Asbury, Reid ^a  

^a Amersham Biosciences   (United States)

Author keywords

Amino acid sequence analysis; Database searches; Image analysis; Laboratory workflow system; Mass spectrometry; Peptide mass fingerprinting; Protein digestion; Proteome analysis; Proteomics; Spot handling robots; Two dimensional electrophoresis

Indexed keywords

PROTEOME;

ACCURACY; AMINO ACID SEQUENCE; ANALYTICAL ERROR; BIOINFORMATICS; DATA BASE; DNA FINGERPRINTING; GENE TECHNOLOGY; GOOD LABORATORY PRACTICE; IMAGE ANALYSIS; INTERMETHOD COMPARISON; ISOELECTRIC FOCUSING; LABORATORY AUTOMATION; MASS SPECTROMETRY; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN ANALYSIS; PROTEIN DEGRADATION; PROTEOMICS; QUANTITATIVE ANALYSIS; RELIABILITY; REPRODUCIBILITY; REVIEW; ROBOTICS; TWO DIMENSIONAL GEL ELECTROPHORESIS;

EID: 0038235120     PISSN: 10811672     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (32)

1. Wasinger VC, Cordwell SJ, Cerpa-Poljak A, Yan JX, Gooley AA, Wilkins MR, Duncan MW, Harris R, Williams KL, Humphery-Smith I: Progress with gene-product mapping of the mollicutes: Mycoplasma genitalium. Electrophoresis 1995;16:1090-1094.
2. Venter JC, Adams, MD, Myers, EW, et al: The human genome. Science 2001;291:1304-1351.
3. Anderson L, Seilhamer J: A comparison of selected mRNA and protein abundances in human liver. Electrophoresis 1997;18:533-537.
4. O'Farrell PH: High-resolution two-dimensional electrophoresis of proteins. J Biol Chem 1975;250:4007-4021.
5. Berkelman T, Stenstedt T: Handbook: 2-D Electrophoresis Using Immobilized pH Gradients. Principles & Methods. Amersham Biosciences, 2001:80-6429-60.
6. http://proteomics.amershambiosciences.com
7. Damerval C, DeVienne D, Zivy M, Thiellement H: Technical improvements in two-dimensional electrophoresis increase the level of genetic variation detected in wheat-seedling protein. Electrophoresis 1986;7:53-54.
8. Wessel D, Flügge UI: A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids. Anal Biochem 1984;138:141-143.
9. Stasyk T, Hellman U, Souchelnytskyi S: Optimizing sample preparation for 2-D electrophoresis. Life Science News 2001;9:9-12.
10. Görg A, Boguth G, Köpf A, Reil G, Parlar H, Weiss W: Sample prefractionation with Sephadex isoelectric focusing prior to narrow pH range two-dimensional gels. Proteomics 2002;2:1652-1657.
11. Görg A, Postel W, Günther S: Review. The current state of two-dimensional electrophoresis with immobilized pH gradients. Electrophoresis 1988;9:531-546.
12. Görg A, Obermaier C, Boguth G, Harder A, Scheibe B, Wildgruber R, Weiss W: The current state of two-dimensional electrophoresis with immobilized pH gradients. Electrophoresis 2000;21:1037-1053.
13. Lämmli UK: Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970;227:680-685.
14. Berggren KN, Schulenberg B, Lopez MF, Steinberg TH, Bogdanova A, Smejkal G, Wang A, Patton WF: An improved formulation of SYPRO Ruby protein gel stain: Comparison with the original formulation and with a ruthenium II tris (bathophenanthroline disulfonate) formulation. Proteomics 2002;2:486-498.
15. Rabilloud T, Strub J-M, Luche S, van Dorsselaer A, Lunardi J: A comparison between Sypro Ruby and ruthenium II tris (bathophenanthroline disulfonate) as fluorescent stains for protein detection in gels. Proteomics 2001;1:699-704.
16. Neuhoff V, Arold N, Taube D and Ehrhardt W: Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear backgroud at nanogram sensitivity using Coomassie Brilliant Blue G-250 and R-250. Electrophoresis 1988;9:255-262.
17. Westermeier R, Naven T: Proteomics in Practice. A laboratory Manual Of Proteome Analysis. Weinheim, Wiley-VCH Verlag-GmbH, 2002, pp 234-235.
18. Yan JX, Wait R, Berkelman T, Harry RA, Westbrook JA, Wheeler CH, Dunn MJ: A modified silver staining protocol for visualization of proteins compatible with matrix-assisted laser desorption/ionization and electrospray ionization-mass spectrometry. Electrophoresis 2000;21:3666-3672.
19. Amersham Biosciences Handbook: Fluorescence Imaging: Principles and Methods. 2000:63-0035-28.
20. Ünlü M, Morgan EM, Minden JS: Difference gel electrophoresis: A single gel method for detecting changes in protein extracts. Electrophoresis 1997;19:2071-2077.
21. Gharbi S, Gaffney P, Yang A, Zvelebil MJ, Cramer R, Waterfield MD, Timms JF: Evaluation of 2D-differential gel electrophoresis forproteomic expression analysis of a model breast cancer cell system. Mol Cell Proteomics 2002;1:91-98.
22. Zhou G, Li H, DeCamp D, Chen S, Shu H, Gong Y, Flag M, Gillespie J, Hu N, Taylor P, Buck ME, Liotta LA, Petricoin III EC, Zhao Y: 2-D differential in-Gel electrophoresis for the identification of human esophageal squamous cell cancer specific protein markers. Mol Cell Proteomics 2002;1:117-124.
23. Anderson UN, Colburn AW, Makarov AA, Raptakis EN, Reynolds DJ, Derrick PJ, Davis SC, Hoffman AD, Thomson S: In-series combination of a magnetic-sector mass spectrometer with a time-of-flight quadratic-field ion mirror. Rev Sci Instrum 1998;69:1650-1660.
24. Spengler B, Luetzenkirchen F, Metzger S, Chaurand P, Kaufmann R, Jeffrey W, Bartlet-Jones M, Pappin DJC: Peptide sequencing of charged derivatives by postsource decay MALDI mass spectrometry. Int JMass Spectrom Ion Proc 1997;169/170:127-140.
25. Roepstorff P, Fohlman J: Proposal for a common nomenclature for sequence ions in mass spectra of peptides. Biomed Mass Spectrom 1984;11:601.
26. Keough T, Youngquist RS, Lacey MP: A method for high sensitivity peptide sequencing using postsource decay matrix-assisted laser desorption ionisation mass spectrometry. Proc Natl Acad Sci USA 1999;96:7131-7136.
27. th Conference Mass Spectrometry and Allied Topics, Chicago, IL, 2001.
28. Keough T, Lacey MP, Strife RJ: Atmospheric pressure matrix-assisted laser desorption/ionization ion-trap mass spectrometry of sulfonic acid derivatized tryptic peptides. Rapid Commun Mass Spectrom 2001;15 (23):2227-2239.
29. Merchant M, Weinberger SR: Recent advancements in surface-enhanced laser desorption/ionizafion-time of flight-mass spectrometry. Electrophoresis 2000;21:1164-1167.
30. Link AJ, Eng J, Schieltz DM, Carmack E, Mize GJ, Morris DR, Garvik BM, Yates JR III: Direct analysis of protein complexes using mass spectrometry. Nature Biotech 1999;17:676-682.
31. Washburn MP, Wolters D, Yates JR III: Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nature Biotech 2001;19:242-247.
32. Gygi SP, Rist B, Gerber SA, Turecek F, Gelb MH, Aebersold R: Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nature Biotech 1999;17:994-999.