-
1
-
-
0019887628
-
Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory
-
Berg O.G., Winter R.B., von Hippel P.H. Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory. Biochemistry. 20:1981;6929-6948.
-
(1981)
Biochemistry
, vol.20
, pp. 6929-6948
-
-
Berg, O.G.1
Winter, R.B.2
Von Hippel, P.H.3
-
2
-
-
0014945567
-
The lac repressor-operator interaction. 3. Kinetic studies
-
Riggs A.D., Bourgeois S., Cohn M. The lac repressor-operator interaction. 3. Kinetic studies. J. Mol. Biol. 53:1970;401-417.
-
(1970)
J. Mol. Biol.
, vol.53
, pp. 401-417
-
-
Riggs, A.D.1
Bourgeois, S.2
Cohn, M.3
-
3
-
-
0024531901
-
Facilitated target location in biological systems
-
von Hippel P.H., Berg O.G. Facilitated target location in biological systems. J. Biol. Chem. 264:1989;675-678.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 675-678
-
-
Von Hippel, P.H.1
Berg, O.G.2
-
4
-
-
0019867850
-
Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor-operator interaction: Kinetic measurements and conclusions
-
Winter R.B., Berg O.G., von Hippel P.H. Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor-operator interaction: kinetic measurements and conclusions. Biochemistry. 20:1981;6961-6977.
-
(1981)
Biochemistry
, vol.20
, pp. 6961-6977
-
-
Winter, R.B.1
Berg, O.G.2
Von Hippel, P.H.3
-
5
-
-
0023364022
-
Computer simulations of the diffusion of a substrate to an active site of an enzyme
-
Sharp K., Fine R., Honig B. Computer simulations of the diffusion of a substrate to an active site of an enzyme. Science. 236:1987;1460-1463.
-
(1987)
Science
, vol.236
, pp. 1460-1463
-
-
Sharp, K.1
Fine, R.2
Honig, B.3
-
6
-
-
0026323912
-
Analysis of equilibrium and kinetic measurements to determine thermodynamic origins of stability and specificity and mechanism of formation of site-specific complexes between proteins and helical DNA
-
Record M.T. Jr, Ha J.H., Fisher M.A. Analysis of equilibrium and kinetic measurements to determine thermodynamic origins of stability and specificity and mechanism of formation of site-specific complexes between proteins and helical DNA. Methods Enzymol. 208:1991;291-343.
-
(1991)
Methods Enzymol.
, vol.208
, pp. 291-343
-
-
Record M.T., Jr.1
Ha, J.H.2
Fisher, M.A.3
-
7
-
-
0032749078
-
Intrinsically unstructured proteins: Re-assessing the protein structure-function paradigm
-
Wright P.E., Dyson H.J. Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm. J. Mol. Biol. 293:1999;321-331.
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 321-331
-
-
Wright, P.E.1
Dyson, H.J.2
-
8
-
-
23444450909
-
Coupling of local folding to site-specific binding of proteins to DNA
-
Spolar R.S., Record M.T. Jr. Coupling of local folding to site-specific binding of proteins to DNA. Science. 263:1994;777-784.
-
(1994)
Science
, vol.263
, pp. 777-784
-
-
Spolar, R.S.1
Record M.T., Jr.2
-
9
-
-
0035830451
-
Kinetic studies of Fos·Jun·DNA complex formation: DNA binding prior to dimerization
-
Kohler J.J., Schepartz A. Kinetic studies of Fos·Jun·DNA complex formation: DNA binding prior to dimerization. Biochemistry. 40:2001;130-142.
-
(2001)
Biochemistry
, vol.40
, pp. 130-142
-
-
Kohler, J.J.1
Schepartz, A.2
-
10
-
-
0035839638
-
Marked stepwise differences within a common kinetic mechanism characterize TATA-binding protein interactions with two consensus promoters
-
Powell R.M., Parkhurst K.M., Brenowitz M., Parkhurst L.J. Marked stepwise differences within a common kinetic mechanism characterize TATA-binding protein interactions with two consensus promoters. J. Biol. Chem. 276:2001;29782-29791.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 29782-29791
-
-
Powell, R.M.1
Parkhurst, K.M.2
Brenowitz, M.3
Parkhurst, L.J.4
-
11
-
-
0037040899
-
Comparison of TATA-binding protein recognition of a variant and consensus DNA promoters
-
Powell R.M., Parkhurst K.M., Parkhurst L.J. Comparison of TATA-binding protein recognition of a variant and consensus DNA promoters. J. Biol. Chem. 277:2002;7776-7784.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 7776-7784
-
-
Powell, R.M.1
Parkhurst, K.M.2
Parkhurst, L.J.3
-
12
-
-
0036086459
-
The papillomavirus E2 proteins: Structure, function, and biology
-
Hegde R.S. The papillomavirus E2 proteins: structure, function, and biology. Annu. Rev. Biophys. Biomol. Struct. 31:2002;343-360.
-
(2002)
Annu. Rev. Biophys. Biomol. Struct.
, vol.31
, pp. 343-360
-
-
Hegde, R.S.1
-
13
-
-
0025953354
-
The papillomavirus E2 regulatory proteins
-
McBride A., Romanczuk H., Howley P. The papillomavirus E2 regulatory proteins. J. Biol. Chem. 266:1991;18411-18414.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 18411-18414
-
-
McBride, A.1
Romanczuk, H.2
Howley, P.3
-
14
-
-
0026656038
-
Crystal structure at 1.7 Å of the bovine papillomavirus-1 E2 DNA-binding domain bound to its DNA target
-
Hegde R., Grossman S., Laimins L., Sigler P. Crystal structure at 1.7 Å of the bovine papillomavirus-1 E2 DNA-binding domain bound to its DNA target. Nature. 359:1992;505-512.
-
(1992)
Nature
, vol.359
, pp. 505-512
-
-
Hegde, R.1
Grossman, S.2
Laimins, L.3
Sigler, P.4
-
15
-
-
0029863788
-
Crystal structure of the DNA-binding domain of the Epstein-Barr virus origin-binding protein EBNA1, bound to DNA
-
Bochkarev A., Barwell J.A., Pfuetzner R.A., Bochkareva E., Frappier L., Edwards A.M. Crystal structure of the DNA-binding domain of the Epstein-Barr virus origin-binding protein EBNA1, bound to DNA. Cell. 84:1996;791-800.
-
(1996)
Cell
, vol.84
, pp. 791-800
-
-
Bochkarev, A.1
Barwell, J.A.2
Pfuetzner, R.A.3
Bochkareva, E.4
Frappier, L.5
Edwards, A.M.6
-
16
-
-
0029761636
-
The dimeric DNA binding domain of the human papillomavirus E2 protein folds through a monomeric intermediate which cannot be native-like
-
Mok Y.K., Bycroft M., de Prat-Gay G. The dimeric DNA binding domain of the human papillomavirus E2 protein folds through a monomeric intermediate which cannot be native-like. Nature Struct. Biol. 3:1996;711-717.
-
(1996)
Nature Struct. Biol.
, vol.3
, pp. 711-717
-
-
Mok, Y.K.1
Bycroft, M.2
De Prat-Gay, G.3
-
17
-
-
0034727658
-
Distinctive cognate sequence discrimination, bound DNA conformation, and binding modes in the E2 C-terminal domains from prototype human and bovine papillomaviruses
-
Ferreiro D.U., Lima L.M., Nadra A.D., Alonso L.G., Goldbaum F.A., de Prat-Gay G. Distinctive cognate sequence discrimination, bound DNA conformation, and binding modes in the E2 C-terminal domains from prototype human and bovine papillomaviruses. Biochemistry. 39:2000;14692-14701.
-
(2000)
Biochemistry
, vol.39
, pp. 14692-14701
-
-
Ferreiro, D.U.1
Lima, L.M.2
Nadra, A.D.3
Alonso, L.G.4
Goldbaum, F.A.5
De Prat-Gay, G.6
-
18
-
-
0030064186
-
Equilibrium dissociation and unfolding of the dimeric human papillomavirus strain-16 E2 DNA-binding domain
-
Mok Y.K., de Prat Gay G., Butler P.J., Bycroft M. Equilibrium dissociation and unfolding of the dimeric human papillomavirus strain-16 E2 DNA-binding domain. Protein Sci. 5:1996;310-319.
-
(1996)
Protein Sci.
, vol.5
, pp. 310-319
-
-
Mok, Y.K.1
De Prat Gay, G.2
Butler, P.J.3
Bycroft, M.4
-
20
-
-
0025166415
-
The DNA-binding domain of HPV-16 E2 protein interaction with the viral enhancer: Protein-induced DNA bending and role of the nonconserved core sequence in binding site affinity
-
Bedrosian C.L., Bastia D. The DNA-binding domain of HPV-16 E2 protein interaction with the viral enhancer: protein-induced DNA bending and role of the nonconserved core sequence in binding site affinity. Virology. 174:1990;557-575.
-
(1990)
Virology
, vol.174
, pp. 557-575
-
-
Bedrosian, C.L.1
Bastia, D.2
-
21
-
-
0032489497
-
DNA structure and flexibility in the sequence-specific binding of papillomavirus E2 proteins
-
Hines C.S., Meghoo C., Shetty S., Biburger M., Brenowitz M., Hegde R.S. DNA structure and flexibility in the sequence-specific binding of papillomavirus E2 proteins. J. Mol. Biol. 276:1998;809-818.
-
(1998)
J. Mol. Biol.
, vol.276
, pp. 809-818
-
-
Hines, C.S.1
Meghoo, C.2
Shetty, S.3
Biburger, M.4
Brenowitz, M.5
Hegde, R.S.6
-
22
-
-
0034613274
-
The structural basis of DNA target discrimination by papillomavirus E2 proteins
-
Kim S.S., Tam J.K., Wang A.F., Hegde R.S. The structural basis of DNA target discrimination by papillomavirus E2 proteins. J. Biol. Chem. 275:2000;31245-31254.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 31245-31254
-
-
Kim, S.S.1
Tam, J.K.2
Wang, A.F.3
Hegde, R.S.4
-
23
-
-
0032489427
-
Subunit rearrangement accompanies sequence-specific DNA binding by the bovine papillomavirus-1 E2 protein
-
Hegde R.S., Wang A.F., Kim S.S., Schapira M. Subunit rearrangement accompanies sequence-specific DNA binding by the bovine papillomavirus-1 E2 protein. J. Mol. Biol. 276:1998;797-808.
-
(1998)
J. Mol. Biol.
, vol.276
, pp. 797-808
-
-
Hegde, R.S.1
Wang, A.F.2
Kim, S.S.3
Schapira, M.4
-
24
-
-
0030876594
-
Conformational changes and stabilization induced by ligand binding in the DNA-binding domain of the E2 protein from human papillomavirus
-
Lima L.M., de Prat-Gay G. Conformational changes and stabilization induced by ligand binding in the DNA-binding domain of the E2 protein from human papillomavirus. J. Biol. Chem. 272:1997;19295-19303.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 19295-19303
-
-
Lima, L.M.1
De Prat-Gay, G.2
-
25
-
-
0034435652
-
Structural and thermodynamic strategies for site-specific DNA binding proteins
-
Jen-Jacobson L., Engler L.E., Jacobson L.A. Structural and thermodynamic strategies for site-specific DNA binding proteins. Struct. Fold. Des. 8:2000;1015-1023.
-
(2000)
Struct. Fold. Des.
, vol.8
, pp. 1015-1023
-
-
Jen-Jacobson, L.1
Engler, L.E.2
Jacobson, L.A.3
-
26
-
-
0034255123
-
Speeding molecular recognition by using the folding funnel: The fly-casting mechanism
-
Shoemaker B.A., Portman J.J., Wolynes P.G. Speeding molecular recognition by using the folding funnel: the fly-casting mechanism. Proc. Natl Acad. Sci. USA. 97:2000;8868-8873.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 8868-8873
-
-
Shoemaker, B.A.1
Portman, J.J.2
Wolynes, P.G.3
-
27
-
-
0034049693
-
Thermodynamic and kinetic analyses for understanding sequence-specific DNA recognition
-
Oda M., Nakamura H. Thermodynamic and kinetic analyses for understanding sequence-specific DNA recognition. Genes Cells. 5:2000;319-326.
-
(2000)
Genes Cells
, vol.5
, pp. 319-326
-
-
Oda, M.1
Nakamura, H.2
-
28
-
-
0025906146
-
Contribution to the thermodynamics of protein folding from the reduction in water-accessible nonpolar surface area
-
Livingstone J.R., Spolar R.S., Record M.T. Jr. Contribution to the thermodynamics of protein folding from the reduction in water-accessible nonpolar surface area. Biochemistry. 30:1991;4237-4244.
-
(1991)
Biochemistry
, vol.30
, pp. 4237-4244
-
-
Livingstone, J.R.1
Spolar, R.S.2
Record M.T., Jr.3
-
29
-
-
0002638463
-
Heat capacity and entropy changes in processes involving proteins
-
Sturtevant J.M. Heat capacity and entropy changes in processes involving proteins. Proc. Natl Acad. Sci. USA. 74:1977;2236-2240.
-
(1977)
Proc. Natl Acad. Sci. USA
, vol.74
, pp. 2236-2240
-
-
Sturtevant, J.M.1
-
30
-
-
0038075395
-
Specific antibody-DNA interaction: A novel strategy for tight DNA recognition
-
Di Pietro S.M., Centeno J.M., Cerutti M.L., Lodeiro M.F., Ferreiro D.U., Alonso L.G., et al. Specific antibody-DNA interaction: a novel strategy for tight DNA recognition. Biochemistry. 42:2003;6218-6227.
-
(2003)
Biochemistry
, vol.42
, pp. 6218-6227
-
-
Di Pietro, S.M.1
Centeno, J.M.2
Cerutti, M.L.3
Lodeiro, M.F.4
Ferreiro, D.U.5
Alonso, L.G.6
-
31
-
-
0029910813
-
Differences in water release for the binding of EcoRI to specific and nonspecific DNA sequences
-
Sidorova N.Y., Rau D.C. Differences in water release for the binding of EcoRI to specific and nonspecific DNA sequences. Proc. Natl Acad. Sci. USA. 93:1996;12272-12277.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 12272-12277
-
-
Sidorova, N.Y.1
Rau, D.C.2
-
32
-
-
0035919819
-
Linkage of EcoRI dissociation from its specific DNA recognition site to water activity, salt concentration, and pH: Separating their roles in specific and non-specific binding
-
Sidorova N.Y., Rau D.C. Linkage of EcoRI dissociation from its specific DNA recognition site to water activity, salt concentration, and pH: separating their roles in specific and non-specific binding. J. Mol. Biol. 310:2001;801-816.
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 801-816
-
-
Sidorova, N.Y.1
Rau, D.C.2
-
33
-
-
0028271856
-
Thermodynamic properties of the transition state for the rate-limiting step in the folding of the alpha subunit of tryptophan synthase
-
Chen X., Matthews C.R. Thermodynamic properties of the transition state for the rate-limiting step in the folding of the alpha subunit of tryptophan synthase. Biochemistry. 33:1994;6356-6362.
-
(1994)
Biochemistry
, vol.33
, pp. 6356-6362
-
-
Chen, X.1
Matthews, C.R.2
|