Analysis of 16S-23S intergenic spacer regions and rrn operon copy number of Aeromonas culicicola MTCC 3249T

DNA Sequence - Journal of DNA Sequencing and Mapping

Volumn 14, Issue 3, 2003, Pages 183-194

  Pidiyar, Vyankatesh J ^a   Jangid, Kamlesh ^a   Patole, Milind S ^a   Shouche, Yogesh S ^a  

^a NATIONAL CENTRE FOR CELL SCIENCE   (India)

Author keywords

16S 23S ISR; 23S rRNA; Aeromonas; TRNA

Indexed keywords

NUCLEOTIDE; RNA 16S; RNA 23S; SPACER DNA; TRANSFER RNA;

AEROMONAS; AEROMONAS CULICICOLA; ARTICLE; BACTERIAL STRAIN; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPERON; RNA SEQUENCE; RNN OPERON; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SOUTHERN BLOTTING;

AEROMONAS; BASE SEQUENCE; BLOTTING, SOUTHERN; DNA PRIMERS; DNA, INTERGENIC; MOLECULAR SEQUENCE DATA; OPERON; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RNA, RIBOSOMAL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

AEROMONAS; AEROMONAS CULICICOLA; AEROMONAS HYDROPHILA; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA; PROKARYOTA;

EID: 0038106527     PISSN: 10425179     EISSN: None     Source Type: Journal    
DOI: 10.1080/1042517031000101257     Document Type: Article

References (32)

1. Aakra, A., Utaker, J.B. and Nes, I.F. (1999) "RFLP of rRNA genes and sequencing of the 16S-23S rDNA intergenic spacer region of ammonia oxidizing bacteria: a phylogenetic approach", International Journal of Systematic and Evolutionary Microbiology 49, 123-130.
2. Austin, B. (1987) "Fish pathogenic aeromonads, with emphasis on the ecology of Aeromonas salmonicida", Experientia 43, 358-359.
3. Bidet, P., Barbut, E, Lalande, V., Burghoffer, B. and Petit, J.C. (1999) "Development of a new PCR-ribotyping method for Clostridium difficile based on ribosomal RNA gene sequencing", FEMS Microbiology Letters 161, 97-106.
4. Chun, J., Huq, A. and Colwell, R.R. (1999) "Analysis of 16S-23S rRNA intergenic spacer regions of Vibrio cholera and Vibrio mimicus", Applied and Environmental Microbiology 65, 2202-2208.
5. Condon, C., Squires, C. and Squires, C.L. (1995) "Control of rRNA transcription in Escherchia coli", Microbiology Reviews 59, 623-645.
6. East, A.K., Allway, D. and Collins, M.D. (1992) "Analysis of DNA encoding 23S rRNA and 16S-23S rRNA intergenic spacer regions from Plesiomonas shigelloides", FEMS Microbiology Letters 95, 57-62.
7. East, A.K. and Collins, M.D. (1993) "Molecular characterization of DNA encoding 23S rRNA and 16S-23S rRNA intergenic spacer regions of Aeromonas hydrophila", FEMS Microbiology Letters 106, 129-134.
8. Freij, B.J. (1987) "Extraintestinal Aeromonas and Plesiomonas infections of humans", Experientia 43, 359-360.
9. Graham, T.A., Golsteyn-Thomas, E.J., Thomas, J.E. and Gannon, V.P. (1997) "Inter- and intraspecies comparison of the 16S-23S rRNA operon intergenic spacer regions of six Listeria spp", International Journal of Systematic and Evolutionary Microbiology 47, 863-869.
10. Gross, R.J. (1987) "Aeromonas in enteric infections: introductory comments", Experientia 43, 362.
11. Guasp, C., Moore, E.R.B., Lalucat, J. and Bennasar, A. (2000) "Utility of internally transcribed 16S-23S spacer regions for the definition of Pseudomonas stutzeri genomovars and other Pseudomonas species", International Journal of Systematic and Evolutionary Microbiology 50, 1629-1639.
12. Gurtler, V. and Barrie, H.D. (1995) "Typing of Staphylococcus aureus strains by PCR-amplification of variable length 16S-23S rDNA spacer regions: characterization of spacer sequences", Microbiology 141, 1255-1265.
13. Gurtler, V. and Stanisich, V.A. (1996) "New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region", Microbiology 142, 3-16.
14. Hain, T., Ward-Rainey, N., Kroppenstedt, R.M., Stackebrandt, E. and Rainey, F.A. (1977) "Discrimination of Streptomyces albidoflavus strains based on the size and number of 16S-23S ribosomal DNA intergenic spacers", International Journal of Systematic Bacteriology 47, 202-206.
15. Khardori, N. and Fainstein, V. (1988) "Aeromonas and Plesiomonas as etiological agents", Annual Reviews Microbiology 42, 395-419.
16. Klappenbach, J., Dunbar, J.M. and Schmidt, T.M. (2000) "rRNA operon copy number reflects ecological strategies of bacteria", Applied and Environmental Microbiology 66, 1328-1333.
17. LeGouill, C. and Dery, C.V. (1991) "A rapid procedure for the screening of recombinant plasmids", Nucleic Acids Research 19, 6655.
18. Lowe, T.M. and Eddy, S.R. (1997) "tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence" Nucleic Acids Research 25, 955-964.
19. Ludwig, W. and Schleifer, K.H. (1994) "Bacterial phylogeny based on 16S and 23S rRNA sequence analysis", FEMS Microbiology Reviews 15, 155-173.
20. Maeda, T., Takada, N., Furushita, M. and Shiba, T. (2000) "Structural variation in the 16S-23S rRNA intergenic spacers of Vibrio parahaemolyticus", FEMS Microbiology Letters 192, 73-77.
21. Martinez-Murcia, A.J., Benlloch, S. and Collins, M.D. (1992) "Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: Lack of congruence with results of DNA-DNA hybridizations", International Journal of Systematic Bacteriology 42, 412-421.
22. Martinez-Murcia, A.J., Borrell, N. and Figueras, M. (2000) "Typing of clinical and environmental Aeromonas veronii strains based on 16S-23S rDNA spacers", FEMS Immunology and Medical Microbiology 28, 225-232.
23. Mehta, A. and Rosato, Y.B. (2001) "Phylogenetic relationships of Xylella fastidiosa strains from different hosts, based on 16S rDNA and 16S-23S intergenic spacer sequences", International Journal of Systematic and Evolutionary Microbiology 51, 311-318.
24. Merchermek, N.B., Salvado, J.C., Cagnon, C., Karama, S. and Mouches, C. (1995) "Characterization of the unlinked 16S rDNA and 23S-5S rRNA operon of Wolbachia pipientis, a prokaryotic parasite of insect gonads", Gene 165, 81-86.
25. Motoyama, Y. and Ogata, T. (2000) "16S-23S rDNA spacer of Pectinatus, Selenomonas and Zymophilus reveal new phylogenetic relationships between these genera", International Journal of Systematic and Evolutionary Microbiology 50, 883-886.
26. Olson, G.J., Woese, C.R. and Overbeek, R. (1994) "The winds of (evolutionary) change: breathing new life into microbiology", Journal of Bacteriology 176, 1-6.
27. Pidiyar, V.J., Kaznowski, A., Badrinarayan, N., Patole, M.S. and Shouche, Y. (2002) "Aeromonas culicicola sp. nov. (MTCC 3249T), from the midgut of Culex quinquifasiatus", International Journal of Systematic and Evolutionary Microbiology 52, 1723-1728.
28. Rogall, T., Wolters, J., Flohr, T. and Bottger, E.C. (1990) "Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium", International Journal of Systematic Bacteriology 40, 323-330.
29. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd Ed. (Cold Spring Harbor Laboratory, New York).
30. Schubert, R. (1987) "Ecology of aeromonads and isolation from environmental sample", Experientia 43, 351-354.
31. Ward, N.L., Rainey, F.A., Hedlund, B.P., Staley, J.T., Ludwig, W. and Stackebrandt, E. (2000) "Comparative phylognetic analyses of members of the order Planctomycetales and division Verrumicrobia: 23S rRNA gene sequence analysis supports 16S rRNA gene sequence-derived phylogeny", International Journal of Systematic and Evolutionary Microbiology 50, 1965-1972.
32. Woese, C.R. (1987) "Bacterial evolution", Microbiology Reviews 51, 221-271.