Mitochondrial gene history and mRNA localization: Is there a correlation?

Nature Reviews Genetics

Volumn 4, Issue 5, 2003, Pages 391-397

  Karlberg, E Olof L ^a   Andersson, Siv G E ^a  

^a UPPSALA UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; FUNGAL PROTEIN; MESSENGER RNA; MITOCHONDRIAL PROTEIN; MITOCHONDRIAL RNA;

ATMOSPHERE; COMPLEX FORMATION; DNA MICROARRAY; EUKARYOTIC CELL; GENE EXPRESSION; GENE FUNCTION; GENE LOCATION; GENE MUTATION; GENOME; HUMAN; MITOCHONDRIAL GENETICS; MITOCHONDRIAL RESPIRATION; NONHUMAN; OXIDATION; PHYLOGENY; PRIORITY JOURNAL; REVIEW; YEAST;

ANIMALS; HUMANS; MITOCHONDRIA; PROTEIN TRANSPORT; RNA, MESSENGER; SACCHAROMYCES CEREVISIAE;

BACTERIA (MICROORGANISMS); EUKARYOTA;

EID: 0038069033     PISSN: 14710056     EISSN: None     Source Type: Journal    
DOI: 10.1038/nrg1063     Document Type: Review

References (49)

1. Saraste, M. Oxidative phosphorylation at the fin de siecle. Science 283, 1488-1492 (1999).
2. Dillon, A. et al. Rates of behaviour and aging specified by mitochondrial function during development. Science 298, 2398-2401 (2002).
3. Wallace, D. C. Mitochondrial diseases in man and mouse. Science 283, 1482-1487 (1999).
4. Margulis, L. Symbiosis in Cell Evolution (Freeman, San Francisco, 1981).
5. Gray, M., Burger, G. & Lang, B. F. Mitochondrial evolution. Science 283, 1476-1481 (1999).
6. Karlberg, O., Canbäck, B., Kurland, C. G. & Andersson, S. G. E. The dual origin of the yeast mitochondrial proteome. Yeast 17, 170-187 (2000).
7. Marc et al. Genome-wide analysis of mRNAs targeted to yeast mitochondria. EMBO Rep. 3,159-164 (2002).
8. Farquhar, J., Bao, H. & Thiemans, M. Atmospheric influence on Earth's earliest sulfur cycle. Science 289, 765-769 (2000).
9. Goodner, B. et al. Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58. Science 294, 2323-2328 (2001).
10. Wood, D. W. et al. The genome of the natural genetic engineer Agrobacterium tumefaciens C58. Science 294, 2317-2323 (2001).
11. Kaneko, T. et al. Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizoblum loti. DNA Res. 7, 331-338 (2000).
12. DelVecchio, V. G. et al. The genome sequence of the facultative intracellular pathogen Brucella melitensis. Proc. Natl Acad. Sci. USA 99, 443-448 (2002).
13. Andersson, S. G. E. et al. The genome sequence of Rickettsia prowazekii and the origin of mitochondria. Nature 396, 133-140 (1998).
14. Kurland, C. G. & Andersson, S. G. E. Origin and evolution of the mitochondrial proteome. Microbiol. Mol. Biol. Rev. 64, 786-820 (2000).
15. Canbäck, B., Andersson, S. G. E. & Kurland, C. G. The global phylogeny of glycolytic enzymes. Proc. Natl Acad. Sci. USA 99, 6097-6102 (2002).
16. Woischnik, M. & Moraes, C. T. Pattern of organization of human mitochondrial pseudogenes in the nuclear genome. Genome Res. 12, 885-893 (2002).
17. Hodges, P. E., McKee, A. H., Davis, B. P., Payne, W. E. & Garrels, J. I. The Yeast Proteome Database (YPD): a model for the organization and presentation of genome-wide functional data. Nucleic Acids Res. 27, 69-73 (1999).
18. Kumar, A. Subcellular localization of the yeast proteome. Genes Dev. 18, 707-719 (2002).
19. Marx, S. et al. Structure of the bcl complex from Seculamonas ecuadoriensts, a jakobid flagellate with an ancestral mitochondrial genome. Mol. Biol. Evol. 20, 145-153 (2003).
20. Amiri, H., Karlberg, O. & Anderssson, S. G. E. Deep origin of plastid/parasite ATP/ADP translocases. J. Mol. Evol. 56, 137-150 (2003).
21. Pfanner, N. & Geissler, A. Versatility of the mitochondrial import machinery. Nature Rev. Mol. Cell Biol. 2, 339-349 (2001).
22. Geissler, A. et al. The mitochondrial presequence translocase: an essential role of Tim50 in directing preproteins to the import channel. Cell 111, 507-518 (2002).
23. Lithgow, T. Targeting of proteins to mitochondria. FEBS Lett. 476, 22-26 (2000).
24. Gratzer S., Beilharz, T., Beddoe, T., Henry, M. F. & Lithgow, T. The mitochondrial protein targeting suppressor (mts1) mutation maps to the mRNA-binding domain of Np13p and affects translation on cytoplasmic polysomes. Mol. Microbiol. 35, 1277-1285 (2000).
25. George, R., Walsh, P., Beddoe, T. & Lithgow, T. The nascent polypeptide-associated complex (NAC) promotes interaction of ribosomes with the mitochondrial surface in vivo. FEBS Lett. 516, 213-216. (2002).
26. Margeot, A. et al. In Saccharomyces cerevisiae, ATP2 mRNA sorting to the vicinity of mitochondria is essential for respiratory function. EMBO J. 21, 6893-6904 (2002).
27. Fujiki, M. & Verner, K. Coupling of cytosolic protein synthesis and mitochondrial protein import in yeast: evidence for co-translational import in vivo. J. Biol. Chem. 268, 1914-1920 (1993).
28. Steinmetz, L. M. et al. Systematic screen for human disease genes in yeast. Nature Genet. 31, 400-404 (2002).
29. Chinnery, P. F. & Turnbull, D. M. The epidemiology and treatment of mitochondrial disease. Am. J. Med. Genet. 106, 94-101 (2001).
30. Yaffe, M. P. The machinery of mitochondria inheritance and behaviour. Science 283, 1493-1497 (1999).
31. Juan, A. S., Brown, M. D. & Wallace, D. C. A mitochondrial DNA mutation at nucleotide pair 14459 of the NADH dehydrogenase subunit 6 gene associated with maternally inherited Leber hereditary optic neuropathy and dystonia Proc. Natl Acad. Sci. USA 91, 6206-6210 (1994).
32. Shoffner, J. M. et al. Myoclonic epilepsy and ragged-red fiber disease (MERRF) is associated with a mitochondrial DNA tRNA (Lys) mutation. Cell 61, 931-937 (1990).
33. Goto, Y., Nonaka, I. & Horai, S. A mutation in the tRNA (Leu)(UU) gene associated with the MELAS subgroup of mitochondrial encephalomyopathies. Nature 348, 651-653 (1990).
34. Bourgeron, T. et al. Mutation of a nuclear succcinate dehydrogenase gene results in mitochondrial respiratory chain deficiency. Nature Genet. 11, 144-149 (1995).
35. Loeffen, J. et al. The first nuclear-encoded complex I mutation in a patient with Leigh syndrome. Am. J. Hum. Genet. 63, 1594-1597 (1998).
36. Tiranti, V. et al. Mutations of SURF-1 in Leigh disease associated with cytochrome c oxidase deficiency. Am. J. Hum. Genet. 63, 1609-1621 (1998).
37. Graham, B. H. et al. A mouse model for mitochondrial myopathy and cardiomyopathy resulting from a deficiency in the heart/muscle isoform of the adenine nucleotide translocator. Nature Genet. 16, 226-234 (1997)
38. Murdock, D. G., Boone, B. E., Esposito, L. A. & Wallace, D. C. Up-regulation of nuclear and mitochondrial genes in the skeletal muscle of mice lacking the heart/muscle isoform of the adenine nucleotide translocator. J. Biol. Chem. 174, 14429-14433 (1999).
39. Esposito, L. A., Melov, S., Panov, A., Cottrell, B. A. & Wallace, D. C. Mitochondrial disease in mouse results in increased oxidative stress. Proc. Natl Acad. Sci. USA 96, 4820-4825 (1999).
40. Petit, P. X., Susin, S. A., Zamzami, N., Mignotte, B. & Kroemer, G. Mitochondria and programmed cell death: back to the future. FEBS Lett. 396, 7-13 (1996).
41. Green, D. R. & Reed, J. C. Mitochondria and apoptosis. Science 281, 1309-1312 (1998).
42. Susin, S. A. et al. Molecular characterization of mitochondrial apoptosis-inducing factor. Nature 397, 387-389 (1999).
43. Andersson, S. G. E. & Kurland, C. G. Origin of mitochondria and hydrogenosomes. Curr. Opin. Micorobiol. 2, 535-541 (1999).
44. Martin, W. & Mueller, M. The hydrogen hypothesis for the first eukaryote. Nature 392, 37-41 (1998).
45. Moreira, D. & Lopez-Garcia, P. Symbiosis between methanogenic archaea and δ-proteobacteria as the origin of eukaryotes: the syntrophic hypothesis. J. Mol. Evol. 47, 517-530 (1998).
46. Brooks, J. J., Logan, G. A., Buick, R. & Summons, R. E. Archean molecular fossils and the early rise of eukaryotes. Science 285, 1033-1036 (1999).
47. Kump, L. R., Kasting, J. F. & Barley, M. E. Rise of atmospheric oxygen and the 'upside-down' Archaean mantle. Geol. Geochem. Geophys. 2 (2001).
48. Catling, D. C., Zahnle, K. J. & McKay, C. P. Biogenic methane, hydrogen escape, and the irreversible oxidation of early Earth. Science 293, 839-843 (2001).
49. Emanuelsson, O., Nielsen, H., Brunak, S. & von Heijne, G. Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J. Mol. Biol. 300, 1005-1016 (2000).