-
1
-
-
0034730140
-
Singular value decomposition for genome-wide expression data processing and modeling
-
Alter,O., Brown,P.O. and Botstein,D. (2000) Singular value decomposition for genome-wide expression data processing and modeling. Proc. Natl Acad. Sci. USA, 97, 10 101-10 106.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 10101-10106
-
-
Alter, O.1
Brown, P.O.2
Botstein, D.3
-
2
-
-
0037016444
-
Combined functional genomic maps of the C-elegans DNA damage response
-
Boulton,S.J., Gartner,A., Reboul,J., Vaglio,P., Dyson,N., Hill,D.E. and Vidal,M. (2002) Combined functional genomic maps of the C-elegans DNA damage response. Science, 295, 127-31.
-
(2002)
Science
, vol.295
, pp. 127-131
-
-
Boulton, S.J.1
Gartner, A.2
Reboul, J.3
Vaglio, P.4
Dyson, N.5
Hill, D.E.6
Vidal, M.7
-
3
-
-
0034714421
-
Gene expression data analysis
-
Brazma,A. and Vilo,J. (2000) Gene expression data analysis. FEBS Lett., 480, 17-24.
-
(2000)
FEBS Lett.
, vol.480
, pp. 17-24
-
-
Brazma, A.1
Vilo, J.2
-
4
-
-
0034602774
-
Knowledge-based analysis of microarray gene expression data by using support vector machines
-
Brown,M.P., Grundy,W.N., Lin,D., Cristianini,N., Sugnet,C.W., Furey,T.S., Ares,Jr,M. and Haussler,D. (2000) Knowledge-based analysis of microarray gene expression data by using support vector machines. Proc. Natl Acad. Sci. USA, 97, 262-267.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 262-267
-
-
Brown, M.P.1
Grundy, W.N.2
Lin, D.3
Cristianini, N.4
Sugnet, C.W.5
Furey, T.S.6
Ares M., Jr.7
Haussler, D.8
-
5
-
-
0036500609
-
A genomic regulatory network for development
-
Davidson,E.H., Rast,J.P., Oliveri,P., Ransick,A., Calestani,C., Yuh,C.H., Minokawa,T., Amore,G., Hinman,V., Arenas-Mena,C. et al. (2002) A genomic regulatory network for development. Science, 295, 1669-1678.
-
(2002)
Science
, vol.295
, pp. 1669-1678
-
-
Davidson, E.H.1
Rast, J.P.2
Oliveri, P.3
Ransick, A.4
Calestani, C.5
Yuh, C.H.6
Minokawa, T.7
Amore, G.8
Hinman, V.9
Arenas-Mena, C.10
-
6
-
-
0036207347
-
Modeling and simulation of genetic regulatory systems: A literature review
-
De Jong,H. (2002) Modeling and simulation of genetic regulatory systems: a literature review. J. Comput. Biol., 9, 67-103.
-
(2002)
J. Comput. Biol.
, vol.9
, pp. 67-103
-
-
De Jong, H.1
-
7
-
-
0034708797
-
Genome microarray analysis of transcriptional activation in multidrug resistance yeast mutants
-
DeRisi,J., van den Hazel,B., Marc,P., Balzi,E., Brown,P., Jacq,C. and Goffeau,A. (2000) Genome microarray analysis of transcriptional activation in multidrug resistance yeast mutants. FEBS Lett., 470, 156-160.
-
(2000)
FEBS Lett.
, vol.470
, pp. 156-160
-
-
DeRisi, J.1
van den Hazel, B.2
Marc, P.3
Balzi, E.4
Brown, P.5
Jacq, C.6
Goffeau, A.7
-
8
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
DeRisi,J.L., Iyer,V.R. and Brown,P.O. (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science, 278, 680-686.
-
(1997)
Science
, vol.278
, pp. 680-686
-
-
DeRisi, J.L.1
Iyer, V.R.2
Brown, P.O.3
-
9
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen,M.B., Spellman,P.T., Brown,P.O. and Botstein,D. (1998) Cluster analysis and display of genome-wide expression patterns. Proc. Natl Acad. Sci. USA, 95, 14 863-14 868.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
10
-
-
0033707946
-
Using Bayesian networks to analyze expression data
-
Friedman,N., Linial,M., Nachman,I. and Pe'er,D. (2000) Using Bayesian networks to analyze expression data. J. Comput. Biol., 7, 601-20.
-
(2000)
J. Comput. Biol.
, vol.7
, pp. 601-620
-
-
Friedman, N.1
Linial, M.2
Nachman, I.3
Pe'er, D.4
-
11
-
-
0033636139
-
Support vector machine classification and validation of cancer tissue samples using microarray expression data
-
Furey,T.S., Cristianini,N., Duffy,N., Bednarski,D.W., Schummer,M. and Haussler,D. (2000) Support vector machine classification and validation of cancer tissue samples using microarray expression data. Bioinformatics, 16, 906-914.
-
(2000)
Bioinformatics
, vol.16
, pp. 906-914
-
-
Furey, T.S.1
Cristianini, N.2
Duffy, N.3
Bednarski, D.W.4
Schummer, M.5
Haussler, D.6
-
12
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes
-
Gasch,A.P., Spellman,P.T., Kao,C.M., Carmel-Harel,O., Eisen,M.B., Storz,G., Botstein,D. and Brown,P.O. (2000) Genomic expression programs in the response of yeast cells to environmental changes. Mol. Biol. Cell, 11, 4241-4257.
-
(2000)
Mol. Biol. Cell
, vol.11
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
Storz, G.6
Botstein, D.7
Brown, P.O.8
-
13
-
-
0034682504
-
Fundamental patterns underlying gene expression profiles: Simplicity from complexity
-
Holter,N.S., Mitra,M., Maritan,A., Cieplak,M., Banavar,J.R. and Fedoroff,N.V. (2000) Fundamental patterns underlying gene expression profiles: simplicity from complexity. Proc. Natl Acad. Sci. USA, 97, 8409-8414.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 8409-8414
-
-
Holter, N.S.1
Mitra, M.2
Maritan, A.3
Cieplak, M.4
Banavar, J.R.5
Fedoroff, N.V.6
-
14
-
-
0032903908
-
The transcriptional program in the response of human fibroblasts to serum
-
Iyer,V.R., Eisen,M.B., Ross,D.T., Schuler,G., Moore,T., Lee,J.C., Trent,J.M., Staudt,L.M., Hudson,Jr,J., Boguski,M.S. et al. (1999) The transcriptional program in the response of human fibroblasts to serum. Science, 283, 883-87.
-
(1999)
Science
, vol.283
, pp. 883-887
-
-
Iyer, V.R.1
Eisen, M.B.2
Ross, D.T.3
Schuler, G.4
Moore, T.5
Lee, J.C.6
Trent, J.M.7
Staudt, L.M.8
Hudson J., Jr.9
Boguski, M.S.10
-
15
-
-
0034086773
-
Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation
-
Jensen,L.J. and Knudsen,S. (2000) Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation. Bioinformatics, 16, 326-33.
-
(2000)
Bioinformatics
, vol.16
, pp. 326-333
-
-
Jensen, L.J.1
Knudsen, S.2
-
16
-
-
0034927555
-
Analysis of variance for gene expression microarray data
-
Kerr,M.K., Martin,M. and Churchill,G.A. (2000) Analysis of variance for gene expression microarray data. J. Comput. Biol., 7, 819-837.
-
(2000)
J. Comput. Biol.
, vol.7
, pp. 819-837
-
-
Kerr, M.K.1
Martin, M.2
Churchill, G.A.3
-
17
-
-
0035014159
-
Analysis of temporal gene expression profiles: Clustering by simulated annealing and determining the optimal number of clusters
-
Lukashin,A.V. and Fuchs,R. (2001) Analysis of temporal gene expression profiles: clustering by simulated annealing and determining the optimal number of clusters. Bioinformatics, 17, 405-414.
-
(2001)
Bioinformatics
, vol.17
, pp. 405-414
-
-
Lukashin, A.V.1
Fuchs, R.2
-
18
-
-
0033734998
-
Gene expression and enzyme activities of the sodium pump during sea urchin development: Implications for indices of physiological state
-
Marsh,A.G., Leong,P.K.K. and Manahan,D.T. (2000) Gene expression and enzyme activities of the sodium pump during sea urchin development: implications for indices of physiological state. Biological Bulletin, 199, 100-107.
-
(2000)
Biological Bulletin
, vol.199
, pp. 100-107
-
-
Marsh, A.G.1
Leong, P.K.K.2
Manahan, D.T.3
-
19
-
-
0004161838
-
Numerical Recipes in C: The Art of Scientific Computing
-
Cambridge University Press, New York
-
Press,W.H., Flannery,B.P., Teukolsky,S.A. and Vetterling,W.T. (1988) Numerical Recipes in C: The Art of Scientific Computing. Cambridge University Press, New York.
-
(1988)
-
-
Press, W.H.1
Flannery, B.P.2
Teukolsky, S.A.3
Vetterling, W.T.4
-
20
-
-
0035375137
-
Computational analysis of microarray data
-
Quackenbush,J. (2001) Computational analysis of microarray data. Nat. Rev. Genet., 2, 418-427.
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 418-427
-
-
Quackenbush, J.1
-
21
-
-
0036180002
-
The evolution of DNA regulatory regions for proteo-gamma bacteria by interspecies comparisons
-
Rajewsky,N., Socci,N.D., Zapotocky,M. and Siggia,E.D. (2002) The evolution of DNA regulatory regions for proteo-gamma bacteria by interspecies comparisons. Genome Res., 12, 298-308.
-
(2002)
Genome Res.
, vol.12
, pp. 298-308
-
-
Rajewsky, N.1
Socci, N.D.2
Zapotocky, M.3
Siggia, E.D.4
-
22
-
-
0033657261
-
Principal components analysis to summarize microarray experiments: Application to sporulation time series
-
Raychaudhuri,S., Stuart,J.M. and Altman,R.B. (2000) Principal components analysis to summarize microarray experiments: application to sporulation time series. Pac. Symp. Biocomput., 455-466.
-
(2000)
Pac. Symp. Biocomput.
, pp. 455-466
-
-
Raychaudhuri, S.1
Stuart, J.M.2
Altman, R.B.3
-
23
-
-
0036173128
-
Extracting transcriptional events from temporal gene expression patterns during Dictyostelium development
-
Sasik,R., Iranfar,N., Hwa,T. and Loomis,W.F. (2002) Extracting transcriptional events from temporal gene expression patterns during Dictyostelium development. Bioinformatics, 18, 61-66.
-
(2002)
Bioinformatics
, vol.18
, pp. 61-66
-
-
Sasik, R.1
Iranfar, N.2
Hwa, T.3
Loomis, W.F.4
-
24
-
-
0035212028
-
DNA microarray analysis of the hyperthermophilic archaeon Pyrococcus furiosus: Evidence for a new type of sulfur-reducing enzyme complex
-
Schut,G.J., Zhou,J.Z. and Adams,M.W.W. (2001) DNA microarray analysis of the hyperthermophilic archaeon Pyrococcus furiosus: evidence for a new type of sulfur-reducing enzyme complex. J. Bacteriol., 183, 7027-7036.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 7027-7036
-
-
Schut, G.J.1
Zhou, J.Z.2
Adams, M.W.W.3
-
25
-
-
0036188173
-
Integrating genotypic data with transcriptomic and proteomic data
-
Shields,D.C. and O'Halloran,A.M. (2002) Integrating genotypic data with transcriptomic and proteomic data. Comp. Funct. Genom., 3, 22-27.
-
(2002)
Comp. Funct. Genom.
, vol.3
, pp. 22-27
-
-
Shields, D.C.1
O'Halloran, A.M.2
-
26
-
-
0035675077
-
Identification of genes specifically expressed in maternal and filial tissues of barley caryopses: A cDNA array analysis
-
Sreenivasulu,N., Altschmied,L., Panitz,R., Hahnel,U., Michalek,W., Weschke,W. and Wobus,U. (2002) Identification of genes specifically expressed in maternal and filial tissues of barley caryopses: a cDNA array analysis. Mol. Genet. Genomics, 266, 758-767.
-
(2002)
Mol. Genet. Genomics
, vol.266
, pp. 758-767
-
-
Sreenivasulu, N.1
Altschmied, L.2
Panitz, R.3
Hahnel, U.4
Michalek, W.5
Weschke, W.6
Wobus, U.7
-
27
-
-
0033027794
-
Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
-
Tamayo,P., Slonim,D., Mesirov,J., Zhu,Q., Kitareewan,S., Dmitrovsky,E., Lander,E.S. and Golub,T.R. (1999) Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation. Proc. Natl Acad. Sci. USA, 96, 2907-2912.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 2907-2912
-
-
Tamayo, P.1
Slonim, D.2
Mesirov, J.3
Zhu, Q.4
Kitareewan, S.5
Dmitrovsky, E.6
Lander, E.S.7
Golub, T.R.8
-
28
-
-
0031915896
-
Large-scale temporal gene expression mapping of centralnervous system development
-
Wen,X., Fuhrman,S., Michaels,G.S., Carr,D.B., Smith,S., Barker,J.L. and Somogyi,R. (1998) Large-scale temporal gene expression mapping of centralnervous system development. Proc. Natl Acad. Sci. USA, 95, 334-339.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 334-339
-
-
Wen, X.1
Fuhrman, S.2
Michaels, G.S.3
Carr, D.B.4
Smith, S.5
Barker, J.L.6
Somogyi, R.7
-
29
-
-
0035024021
-
Validating clustering for gene expression data
-
Yeung,K.Y., Haynor,D.R. and Ruzzo,W.L. (2001) Validating clustering for gene expression data. Bioinformatics, 17, 309-318.
-
(2001)
Bioinformatics
, vol.17
, pp. 309-318
-
-
Yeung, K.Y.1
Haynor, D.R.2
Ruzzo, W.L.3
-
30
-
-
0035872073
-
An evaluation of the performance of cDNA microarrays for detectingchanges in global mRNA expression
-
Yue,H., Eastman,P.S., Wang,B.B., Minor,J., Doctolero,M.H., Nuttall,R.L., Stack,R., Becker,J.W., Montgomery,J.R., Vainer,M. and Johnston,R. (2001) An evaluation of the performance of cDNA microarrays for detectingchanges in global mRNA expression. Nucleic Acids Res., 29, E41-1.
-
(2001)
Nucleic Acids Res.
, vol.29
-
-
Yue, H.1
Eastman, P.S.2
Wang, B.B.3
Minor, J.4
Doctolero, M.H.5
Nuttall, R.L.6
Stack, R.7
Becker, J.W.8
Montgomery, J.R.9
Vainer, M.10
Johnston, R.11
|