Assessing the effects of time and spatial averaging in 15N chemical shift/15N-1H dipolar correlation solid state NMR experiments

Journal of Biomolecular NMR

Volumn 26, Issue 4, 2003, Pages 283-295

  Straus, Suzana K ^a,b   Scott, Walter R P ^a   Watts, Anthony ^b  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

Mobility of membrane helices; Mosaic spread; PISA wheels; PISEMA; Time averaging

Indexed keywords

BACTERIORHODOPSIN; MEMBRANE PROTEIN; NITROGEN 15; PEPTIDE; PROTON;

ALPHA HELIX; ARTICLE; CONTROLLED STUDY; CORRELATION ANALYSIS; EXPERIMENTAL MODEL; MATHEMATICAL COMPUTING; MOLECULAR DYNAMICS; MOTION; NORMAL DISTRIBUTION; NUCLEAR MAGNETIC RESONANCE; POLARIZATION; PRIORITY JOURNAL; PROTON NUCLEAR MAGNETIC RESONANCE; ROTATION; SIMULATION; SOLID STATE; TILTING; TIME;

ALGORITHMS; BACTERIORHODOPSINS; HYDROGEN; MEMBRANE PROTEINS; MODELS, CHEMICAL; MOTION; NITROGEN ISOTOPES; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN STRUCTURE, SECONDARY; ROTATION;

EID: 0038048507     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1024098123386     Document Type: Article

References (51)

1. Bachar, M. and Becker, O.M. (2000) Biophys. J., 78, 1359-1375.
2. Bechinger, B. (2000) Phys. Chem. Chemical Phys., 2, 4563-4579.
3. Bechinger, B. and Sizun, C. (2002) Concepts Magnetic Res., submitted.
4. Bielecki, A., Kolbert, A.C. and Levitt, M.H. (1989) Chem. Phys. Lett., 155, 341-346.
5. Biggin, P.C. and Sansom, M.S.P. (1999) Biophys. Chem., 76, 161-183.
6. Bowers, J.L. and Oldfield, E. (1988) Biochemistry, 27, 5156-5161.
7. Brender, J.R., Taylor, D.M. and Ramamoorthy, A. (2001) J. Am. Chem. Soc., 123, 914-922.
8. Colnago, L.A., Valentine, K.G. and Opella, S.J. (1987) Biochemistry, 26, 847-854.
9. Cordes, F.S., Kukol, A., Forrest, L.R., Arkin, I.T., Sansom, M.S.P. and Fischer, W.B. (2001) Biochim. Biophys. Acta, 1512, 291-298.
10. Cornilescu, G. and Bax, A. (2000) J. Am. Chem. Soc., 122, 10143-10154.
11. Cross, T.A. and Opella, S.J. (1982) J. Mol. Biol., 159, 543-549.
12. Denny, J.K., Wang, J., Cross, T.A. and Quine, J.R. (2001) J. Magn. Reson., 152, 217-226.
13. Ernst, R.R., Bodenhausen, G. and Wokaun, A. (1987) Principles of Nuclear Magnetic Resonance in One and Two Dimensions, Oxford University Press, Oxford.
14. Glaubitz, C. and Watts, A. (1998) J. Magn. Reson., 130, 305-316.
15. Herzfeld, J., Mulliken, C.M., Siminovitch, D.J. and Griffin, R.G. (1987) Biophys. J., 52, 855-858.
16. Hubbell, W.L., Cafiso, D.S. and Altenbach, C. (2000) Nat. Struct. Biol., 7, 735-739.
17. Huster, D., Xiao, L. and Hong, M. (2001) Biochemistry, 40, 7662-7674.
18. Ishii, Y., Terao, T. and Hayashi, S. (1997) J. Chem. Phys., 107, 2760-2774.
19. Johnson Jr, J.P. and Zagotta, W.N. (2001) Nature, 412, 917-21.
20. Jones, D.H., Barber, K.R., VanDerLoo, E.W. and Grant, C.W. (1998) Biochemistry, 37, 16780-16787.
21. Kukol, A. and Arkin, I.T. (1999) Biophys. J., 77, 1594-1601.
22. Kumashiro, K.K., Schmidt-Rohr, K., Murphy III, O.J., Ouellette, K.L., Cramer, W.A. and Thompson, L.K. (1998) J. Am. Chem. Soc., 120, 5043-5051.
23. Lin, J.H. and Baumgaertner, A. (2000) Biophys. J., 78, 1714-1724.
24. Litman, B.J. and Mitchell, D.C. (1996) Lipids, 31, S193-197.
25. Marassi, F.M. (2001) Biophys. J., 80, 994-1003.
26. Marassi, F.M. and Opella, S.J. (2000) J. Magn. Reson., 144, 150-155.
27. Marassi, F.M., Ma, C., Gratkowski, H., Straus, S.K., Strebel, K., Oblatt-Montal, M., Montal, M. and Opella, S.J. (1999) Proc. Natl. Acad. Sci. USA, 96, 14336-14341.
28. Marsh, D. (1990) CRC Handbook of Lipid Bilayers, CRC Press Ltd., London.
29. North, C.L. and Cross, T.A. (1995) Biochemistry, 34, 5883-5895.
30. Opella, S.J., Marassi, F.M., Gesell, J.J., Valente, A.P., Kim, Y., Oblatt-Montal, M. and Montal, M. (1999) Nat. Struct. Biol., 6, 374-379.
31. Prosser, R.S. and Davis, J.H. (1994) Biophys. J., 66, 1429-1440.
32. Prosser, R.S., Davis, J.H., Dahlquist, F.W. and Lindorfer, M.A. (1991) Biochemistry, 30, 4687-4696.
33. Qui, X.Q., Jakes, K.S., Kienker, P.K., Finkelstein, A. and Slatin, S.L. (1996) J. Gen. Phys., 107, 318-328.
34. Ramamoorthy, A., Gierasch, L.M. and Opella, S.J. (1996) J. Magn. Reson., B111, 81-84.
35. Ramamoorthy, A., Wu, C.H. and Opella, S.J. (1999) J. Magn. Reson., 140, 131-140.
36. Saito, H., Tuzi, S., Yamaguchi, S., Tanio, M. and Naito, A. (2000) Biochim. Biophys. Acta, 1460, 39-48.
37. Sass, H.J., Buldt, G., Gessenich, R., Hehn, D., Neff, D., Schlesinger, R., Berendzen, J. and Ormos, P. (2000) Nature, 406, 649-653.
38. Scheurer, C., Skrynnikov, N.R., Lienin, S.F., Straus, S.K., Brüschweiler, R. and Ernst, R.R. (1999) J. Am. Chem. Soc., 121, 4242-4251.
39. Schiffer, M. and Edmundson, A.B. (1967) Biophys. J., 7, 121-135.
40. Scott, W.R.P., Hünenberger, P.H., Tironi, I.G., Mark, A.E., Billeter, S.R., Fennen, J., Torda, A.E., Huber, T., Krüger, P. and van Gunsteren, W.F. (1999) J. Phys. Chem., A103, 3596-3607.
41. Shen, L.Y., Bassolino, D. and Stouch, T. (1997) Biophys. J., 73, 3-20.
42. Sizun, C. and Bechinger, B. (2002) J. Am. Chem. Soc., 124, 1146-1147.
43. Smith, R., Separovic, F., Milne, T.J., Whittaker, A., Bennett, F.M., Cornell, B.A. and Makriyannis, A. (1994) J. Mol. Biol., 241, 456-466.
44. Song, Z.Y., Kovacs, F.A., Wang, J., Denny, J.K., Shekar, S.C., Quine, J.R. and Cross, T.A. (2000) Biophys. J., 79, 767-775.
45. Straus, S.K., Bremi, T. and Ernst, R.R. (1997) J. Biomol. NMR, 10, 119-128.
46. Tieleman, D.P., Shrivastava, I.H., Ulmschneider, M.R. and Sansom, M.S.P. (2001) Proteins, 44, 63-72.
47. van Gunsteren, W.F., Billeter, S.R., Eising, A.A., Hünenberger, P.H., Krüger, P., Mark, A.E., Scott, W.R.P. and Tironi, I.G. (1996) Biomolecular Simulation: The GROMOS96 Manual and User Guide, VdF: Hochschulverlag AG an der ETH Zürich and BIOMOS b.v, Zürich, Groningen.
48. Wang, J., Denny, J., Tian, C., Kim, S., Mo, Y., Kovacs, F., Song, Z., Nishimura, K., Gan, Z., Fu, R., Quine, J.R. and Cross, T.A. (2000), J. Magn. Reson., 144, 162-167.
49. Watts, A. (1998) Biochem. Biophys. Acta, 1376, 297-318.
50. Waugh, J.S. (1976) Proc. Natl. Acad. Sci. USA, 73, 1394-1397.
51. Woolf, T.B. and Roux, B. (1994) Proc. Natl. Acad. Sci. USA, 91, 11631-11635.