-
3
-
-
0009525248
-
Are molecular motions important for function?
-
Frauen felder, H., Deisenhofer, J., Wolynes, P. G., Eds.; Dahlem University Press: Berlin
-
McCammon, J. A. Are molecular motions important for function? In Simplicity and Complexity in Proteins and Nucleic Acids; Frauen felder, H., Deisenhofer, J., Wolynes, P. G., Eds.; Dahlem University Press: Berlin, 1999.
-
(1999)
Simplicity and Complexity in Proteins and Nucleic Acids
-
-
McCammon, J.A.1
-
6
-
-
0037165996
-
-
Zhuang, X. W.; Kim, H.; Pereira, M. J. B.; Babcock, H. P.; Walter, N. G.; Chu, S. Science 2002, 296, 1473-1476.
-
(2002)
Science
, vol.296
, pp. 1473-1476
-
-
Zhuang, X.W.1
Kim, H.2
Pereira, M.J.B.3
Babcock, H.P.4
Walter, N.G.5
Chu, S.6
-
7
-
-
0037154793
-
-
Falke, J. J. Science 2002, 295, 1480-1481.
-
(2002)
Science
, vol.295
, pp. 1480-1481
-
-
Falke, J.J.1
-
8
-
-
0037154884
-
-
Eisenmesser, E. Z.; Bosco, D. A.; Akke, M.; Kern, D. Science 2002, 295, 1520-1523.
-
(2002)
Science
, vol.295
, pp. 1520-1523
-
-
Eisenmesser, E.Z.1
Bosco, D.A.2
Akke, M.3
Kern, D.4
-
9
-
-
0037066140
-
-
Gulotta, M.; Deng, H.; Deng, H.; Dyer, R. B.; Callender, R. H. Biochemistry 2002, 41, 3353-3363.
-
(2002)
Biochemistry
, vol.41
, pp. 3353-3363
-
-
Gulotta, M.1
Deng, H.2
Deng, H.3
Dyer, R.B.4
Callender, R.H.5
-
10
-
-
0036305753
-
-
Antoniou, D.; Caratzoulas, S.; Kalyanaraman, C.; Mincer, J. S.; Schwartz, S. D. Eur. J. Biochem. 2002, 269, 3103-3112.
-
(2002)
Eur. J. Biochem.
, vol.269
, pp. 3103-3112
-
-
Antoniou, D.1
Caratzoulas, S.2
Kalyanaraman, C.3
Mincer, J.S.4
Schwartz, S.D.5
-
12
-
-
0037022683
-
-
Agarwal, P. K.; Billeter, S. R.; Rajagopalan, P. T. R.; Benkovic, S. J.; Hammes-Schiffer, S. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 2794-2799.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 2794-2799
-
-
Agarwal, P.K.1
Billeter, S.R.2
Rajagopalan, P.T.R.3
Benkovic, S.J.4
Hammes-Schiffer, S.5
-
15
-
-
84986513644
-
-
Feld, M. J.; Bash, P. A.; Karplus, M. J. Comput. Chem. 1999, 11, 700-733.
-
(1990)
J. Comput. Chem.
, vol.11
, pp. 700-733
-
-
Feld, M.J.1
Bash, P.A.2
Karplus, M.3
-
17
-
-
0035312820
-
-
Gogonea, V.; Suarez, D.; van der Vaart, A.; Merz, K. W. Curr. Opin. Struct. Biol. 2001, 11, 217-223.
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, pp. 217-223
-
-
Gogonea, V.1
Suarez, D.2
Van Der Vaart, A.3
Merz, K.W.4
-
19
-
-
3142684303
-
Ab Initio QM/MM and free energy calculations of enzyme reactions
-
Schlick, T., Gan, H. H., Eds.; Springer-Verlag: New York
-
Zhang, Y.; Liu, H.; Yang, W. Ab Initio QM/MM and Free Energy Calculations of Enzyme Reactions. In Computational Methods for Macromolecules - Challenges and Applications; Schlick, T., Gan, H. H., Eds.; Springer-Verlag: New York, 2002.
-
(2002)
Computational Methods for Macromolecules - Challenges and Applications
-
-
Zhang, Y.1
Liu, H.2
Yang, W.3
-
21
-
-
0030598997
-
-
Liu, H.; Muller-Plathe, F.; van Gunsteren, W. F. J. Mol. Biol. 1996, 261, 454-469.
-
(1996)
J. Mol. Biol.
, vol.261
, pp. 454-469
-
-
Liu, H.1
Muller-Plathe, F.2
Van Gunsteren, W.F.3
-
22
-
-
0032577020
-
-
Alhambra, C.; Wu, L.; Zhang, Z.-Y.; Gao, J. J. Am. Chem. Soc. 1998, 120, 3858-3866.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 3858-3866
-
-
Alhambra, C.1
Wu, L.2
Zhang, Z.-Y.3
Gao, J.4
-
27
-
-
0025778840
-
-
Sussman, J. L.; Harel, M.; Frolow, F.; Oefner, C.; Goldman, A.; Toker, L.; Silman, I. Science 1991, 253, 872-879.
-
(1991)
Science
, vol.253
, pp. 872-879
-
-
Sussman, J.L.1
Harel, M.2
Frolow, F.3
Oefner, C.4
Goldman, A.5
Toker, L.6
Silman, I.7
-
28
-
-
0036283942
-
-
Shen, T.; Tai, K.; Henchman, R. H.; McCammon, J. A. Acc. Chem. Res. 2002, 35, 332-340.
-
(2002)
Acc. Chem. Res.
, vol.35
, pp. 332-340
-
-
Shen, T.1
Tai, K.2
Henchman, R.H.3
McCammon, J.A.4
-
29
-
-
15844422678
-
-
Harel, M.; Quinn, D. M.; Nair, H. K.; Silman, I.; Sussman, J. L. J. Am. Chem. Soc. 1996, 118, 2340-2346.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 2340-2346
-
-
Harel, M.1
Quinn, D.M.2
Nair, H.K.3
Silman, I.4
Sussman, J.L.5
-
30
-
-
0027217179
-
-
Ordentlich, A.; Barak, D.; Kronman, C.; Flashner, Y.; Leitner, M.; Segall, Y.; Ariel, N.; Cohen, S.; Velan, B.; Shafferman, A. J. Biol. Chem. 1993, 268, 17083-17095.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 17083-17095
-
-
Ordentlich, A.1
Barak, D.2
Kronman, C.3
Flashner, Y.4
Leitner, M.5
Segall, Y.6
Ariel, N.7
Cohen, S.8
Velan, B.9
Shafferman, A.10
-
31
-
-
0347314967
-
-
Quinn, D. M.; Feaster, S. R.; Nair, H. K.; Baker, N. A.; Radic, Z.; Taylor, P. J. Am. Chem. Soc. 2000, 122, 2975-2980.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 2975-2980
-
-
Quinn, D.M.1
Feaster, S.R.2
Nair, H.K.3
Baker, N.A.4
Radic, Z.5
Taylor, P.6
-
32
-
-
0026794595
-
-
Radic, Z.; Gibney, G.; Kawamoto, S.; MacPhee-Quigley, K.; Bongiorno, C.; Taylor, P. Biochemistry 1992, 31, 9760-9767.
-
(1992)
Biochemistry
, vol.31
, pp. 9760-9767
-
-
Radic, Z.1
Gibney, G.2
Kawamoto, S.3
MacPhee-Quigley, K.4
Bongiorno, C.5
Taylor, P.6
-
33
-
-
0027517144
-
-
Radiz, Z.; Pickering, N. A.; Vellom, D. C.; Camp, S.; Taylor, P. Biochemistry 1993, 32, 12074-12084.
-
(1993)
Biochemistry
, vol.32
, pp. 12074-12084
-
-
Radiz, Z.1
Pickering, N.A.2
Vellom, D.C.3
Camp, S.4
Taylor, P.5
-
34
-
-
0037125501
-
-
Kua, J.; Zhang, Y.; McCammon, J. A. J. Am. Chem. Soc. 2002, 124, 8260-8267.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 8260-8267
-
-
Kua, J.1
Zhang, Y.2
McCammon, J.A.3
-
35
-
-
0037019547
-
-
Zhang, Y.; Kua, J.; McCammon, J. A. J. Am. Chem. Soc. 2002, 104, 10572-10577.
-
(2002)
J. Am. Chem. Soc.
, vol.104
, pp. 10572-10577
-
-
Zhang, Y.1
Kua, J.2
McCammon, J.A.3
-
36
-
-
0001582558
-
-
Zhang, Y.; Lee, T.; Yang, W. J. Chem. Phys. 1999, 110, 46-54.
-
(1999)
J. Chem. Phys.
, vol.110
, pp. 46-54
-
-
Zhang, Y.1
Lee, T.2
Yang, W.3
-
37
-
-
0000145441
-
-
Zhang, Y.; Liu, H.; Yang, W. J. Chem. Phys. 2000, 112, 3483-3492.
-
(2000)
J. Chem. Phys.
, vol.112
, pp. 3483-3492
-
-
Zhang, Y.1
Liu, H.2
Yang, W.3
-
38
-
-
0004133516
-
-
Gaussian, Inc.: Pittsburgh, PA
-
Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Zakrzewski, V. G.; Montgomery, J. A., Jr.; Stratmann, R. E.; Burant, J. C.; Dapprich, S.; Millam, J. M.; Daniels, A. D.; Kudin, K. N.; Strain, M. C.; Farkas, O.; Tomasi, J.; Barone, V.; Cossi, M.; Cammi, R.; Mennucci, B.; Pomelli, C.; Adamo, C.; Clifford, S.; Ochterski, J.; Petersson, G. A.; Ayala, P. Y.; Cui, Q.; Morokuma, K.; Malick, D. K.; Rabuck, A. D.; Raghavachari, K.; Foresman, J. B.; Cioslowski, J.; Ortiz, J. V.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, I.; Gomperts, R.; Martin, R. L.; Fox, D. J.; Keith, T.; Al-Laham, M. A.; Peng, C. Y.; Nanayakkara, A.; Gonzalez, C.; Challacombe, M.; Gill, P. M. W.; Johnson, B. G.; Chen, W.; Wong, W. M.; Andres, J. L.; Head-Gordon, M.; Replogle, E. S.; Pople, J. A. Gaussian 98, revision A.5; Gaussian, Inc.: Pittsburgh, PA, 1998.
-
(1998)
Gaussian 98, Revision A.5
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Zakrzewski, V.G.7
Montgomery J.A., Jr.8
Stratmann, R.E.9
Burant, J.C.10
Dapprich, S.11
Millam, J.M.12
Daniels, A.D.13
Kudin, K.N.14
Strain, M.C.15
Farkas, O.16
Tomasi, J.17
Barone, V.18
Cossi, M.19
Cammi, R.20
Mennucci, B.21
Pomelli, C.22
Adamo, C.23
Clifford, S.24
Ochterski, J.25
Petersson, G.A.26
Ayala, P.Y.27
Cui, Q.28
Morokuma, K.29
Malick, D.K.30
Rabuck, A.D.31
Raghavachari, K.32
Foresman, J.B.33
Cioslowski, J.34
Ortiz, J.V.35
Stefanov, B.B.36
Liu, G.37
Liashenko, A.38
Piskorz, P.39
Komaromi, I.40
Gomperts, R.41
Martin, R.L.42
Fox, D.J.43
Keith, T.44
Al-Laham, M.A.45
Peng, C.Y.46
Nanayakkara, A.47
Gonzalez, C.48
Challacombe, M.49
Gill, P.M.W.50
Johnson, B.G.51
Chen, W.52
Wong, W.M.53
Andres, J.L.54
Head-Gordon, M.55
Replogle, E.S.56
Pople, J.A.57
more..
-
39
-
-
0003684555
-
-
February; The most updated version for the TINKER program can be obtained from J. W. Ponder's World Wide Web site
-
Ponder, J. W. TINKER, Software Tools for Molecular Design, version 3.6; February 1998. The most updated version for the TINKER program can be obtained from J. W. Ponder's World Wide Web site at http://dasher.wustl.edu/tinker
-
(1998)
TINKER, Software Tools for Molecular Design, Version 3.6
-
-
Ponder, J.W.1
-
40
-
-
0029011701
-
-
Cornell, W. D.; Cieplak, P.; Bayly, C. I.; Gould, I. R.; Merz, K. M.; Ferguson, D. M.; Spellmeyer, D. C.; Fox, T.; Caldwell, J. W.; Kollman, P. A. J. Am. Chem. Soc. 1995, 117, 5179-5197.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
41
-
-
0031466349
-
-
Fox, T.; Scanlan, T. S.; Kollman, P. A. J. Am. Chem. Soc. 1997, 119, 11571-11577.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 11571-11577
-
-
Fox, T.1
Scanlan, T.S.2
Kollman, P.A.3
-
42
-
-
0004016501
-
-
Jorgensen, W. L.; Chandrasekhar, J.; Madura, J.; Impey, R. W.; Klein, M. L. J. Chem. Phys. 1983, 79, 926-933.
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-933
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.3
Impey, R.W.4
Klein, M.L.5
|