Writhing geometry of open DNA

Journal of Chemical Physics

Volumn 118, Issue 21, 2003, Pages 9864-9874

  Rossetto, V ^a   Maggs, A C ^a  

^a CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL ANALYSIS; GEOMETRY; MATHEMATICAL MODELS; MOLECULAR PHYSICS; NUMERICAL METHODS;

CALUGAREANU-WHITE FORMULA; OPEN STIFF MOLECULES; WRITHING GEOMETRY;

DNA SEQUENCES;

EID: 0038002913     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.1569905     Document Type: Article

References (31)

1. P. Cluzel, A. Lebrun, C. Heller, R. Lavery, J.-L. Viovy, D. Chatenay, and F. Caron, Science 271, 792 (1996).
2. S. B. Smith, L. Finzi, and C. Bustamante, Science 258, 1122 (1992).
3. T. Strick, J.-F. Allemand, D. Bensimon, and V. Croquette, Biophys. J. 74, 2016 (1998).
4. J. Marko, Phys. Rev. E 55, 1758 (1997).
5. J. Marko and E. D. Siggia, Phys. Rev. E 52, 2912 (1995).
6. C. Bouchiat and M. Mézard, Phys. Rev. Lett. 80, 1556 (1998).
7. J. Moroz and P. Nelson, Macromolecules 31, 6333 (1998).
8. A. Vologodskii and J. Marko, Biophys. J. 73, 123 (1997).
9. G. Cǎlugǎreanu, Rev. Math. Pures Appl. 4, 5 (1959).
10. J. White, Am. J. Math. 91, 693 (1969).
11. V. Rossetto and A. C. Maggs, Phys. Rev. Lett. 88, 089801 (2002).
12. F. B. Fuller, Proc. Natl. Acad. Sci. U.S.A. 68, 815 (1971).
13. F. B. Fuller, Proc. Natl. Acad. Sci. U.S.A. 75, 3557 (1978).
14. A. C. Maggs, J. Chem. Phys. 114, 5888 (2001).
15. M. Berry, Nature (London) 326, 277 (1987).
16. V. I. Arnold and B. A. Keshin, Topological Methods in Hydrodynamics (Springer-Verlag, Berlin, 1991).
17. R. P. Feynman, Elementary Particles and the Laws of Physics: The 1986 Dirac Memorial Lectures (Cambridge University Press, Cambridge, England, 1987).
18. M. Antoine, A. Comtet, J. Desbois, and S. Ouvry, J. Phys. A 24, 2581 (1991).
19. K. Kelnin and J. Langowski, Biopolymers 54, 307 (2000).
20. A. Y. Grosberg. Phys. Rev. Lett. 85, 3858 (2000).
21. M. Doi and S. Edwards, The Theory of Polymer Dynamics (Clarendon, Oxford, 1992).
22. B. Velikson, T. Garel, J.-C. Niel, H. Orland, and J. C. Smith, J. Comput. Chem. 13, 1216 (1992).
23. K. V. Klenin, A. V. Vologodskii, V. V. Anshelevich, V. Y. Klisko, A. M. Dykhne, and M. D. Frank-Kamenetskii, J. Biomol. Struct. Dyn. 6, 707 (1989).
24. A. V. Vologodskii, Mol. Biol. 35, 240 (2001).
25. P.-G. de Gennes, Scaling Concepts in Polymer Physics (Cornell University Press, Ithaca, NY, 1979).
26. C. Bouchiat and M. Mézard, Phys. Rev. Lett. 88, 089802 (2002).
27. P. Levy, processus Stochastiques et Mouvement Brownien (Editions Jacques Gabay, Paris, 1948).
28. V. F. R. Jones, Ann. Math. 126, 335 (1987).
29. L. H. Kauffman, Knots and Physics (World Scientiic, Singapore 1991).
30. L. H. Kauffman, Topology 26, 395 (1987).
31. T. Deguchi and K. Tsurusaki, Phys. Rev. E 55, 6245 (1997).