Development of a quantitative pachytene chromosome map in Oryza sativa by imaging methods

Genes and Genetic Systems

Volumn 78, Issue 2, 2003, Pages 155-161

  Kato, Seiji ^a,d   Ohmido, Nobuko ^b   Fukui, Kiichi ^c  

^a FOOD RESEARCH INSTITUTE   (Japan)

^b KOBE UNIVERSITY   (Japan)

^c OSAKA UNIVERSITY   (Japan)

^d Yamanashi Pref Agric Res Center   (Japan)

Author keywords

Chromomere; Image analysis; Oryza sativa; Pachytene chromosome; Quantitative chromosome map

Indexed keywords

4',6 DIAMIDINO 2 PHENYLINDOLE; PROPIDIUM IODIDE; SATELLITE DNA;

ARTICLE; CHROMOSOME 9; CHROMOSOME MAP; CHROMOSOME NOR; FLUORESCENCE; GENETIC LINKAGE; IMAGE ANALYSIS; IMAGING SYSTEM; METAPHASE CHROMOSOME; NONHUMAN; PACHYTENE; QUANTITATIVE ANALYSIS; RICE;

CHROMOSOME MAPPING; IN SITU HYBRIDIZATION, FLUORESCENCE; KARYOTYPING; LINKAGE (GENETICS); ORYZA SATIVA;

ORYZA SATIVA;

EID: 0037983816     PISSN: 13417568     EISSN: None     Source Type: Journal    
DOI: 10.1266/ggs.78.155     Document Type: Article

References (30)

1. Cheng, Z., Buell, C.R., Wing, R. A., Gu, M., and Jiang, J. (2001) Toward a cytological characterization of the rice genome. Genome Res. 11, 2133-2141.
2. Cheng, Z., Presting, G. G., Buell, C. R., Wing, R. A., and Jiang, J. (2001) High-resolution pachytene chromosome mapping of bacterial artificial chromosomes anchored by genetic markers reveals the centromere location and the distribution of genetic recombination along chromosome 10 of rice. Genetics 157, 1749-1757.
3. Dawe, R. K., John, Sedat, W. J., Agard, D. A., and Cande, W. Z. (1994) Meiotic chromosome pairing in maize is associated with a novel chromatin organizaiton. Cell 76, 901-912.
4. Fransz, P. F., Armstrong, S., de Jong, J. H., Parnell, L. D., Van Drunen, C., Dean, C., Zabel, P., Bisseling, T., and Jones., G. H. (2000) Integrated cytogenetic map of chromosome arm 4S of A. thaliana: structural organization of heterochromatic knob and centromere region. Cell 100, 367-376.
5. Fukui, K. (1986) Standardization of karyotyping plant chromosomes by a newly developed chromosome image analyzing system (CHIAS). Theor. Appl. Genet. 72, 27-32.
6. rd Intl. Rice Genet. Symp. Manila Intl. Rice Res. Inst., 117-130.
7. Fukui, K. (1996b) Plant chromosomes at mitosis. In: Fukui, K, Nakayama, S, eds. Plant Chromosomes; Laboratory Methods. Boca Raton, FL: CRC Press, 1-18.
8. Fukui, K., and Iijima, K. (1991) Somatic chromosome map of rice by imaging methods. Theor. Appl. Genet. 81, 589-596.
9. Fukui, K., and Kakeda, K. (1990) Quantitative karyotyping of barley chromosomes by image analysis methods. Genome 33, 450-458.
10. Fukui, K., and Kamisugi, Y. (1995) Mapping of C-banded Crepis chromosomes by imaging methods. Chromosome Res. 3, 79-86.
11. Fukui, K., and Mukai, Y. (1988) Condensation pattern as a new image parameter for identification of small chromosomes in plants. Jpn. J. Genet. 63, 359-366.
12. Gustafson, J. P., Butler, E., and McIntyre, C. L. (1990) Physical mapping of a low-copy DNA sequence in rye (Secale cereale L.). Proc Natl. Acad. Sci. USA 87, 1899-1902.
13. Havekes, F. W. J., de Jong, J. H., Heyting, C., and Ramanna, M.S. (1994) Synapsis and chiasma formation in four meiotic mutants of tomato (Lycopersicon esculentum) Chromosome Res. 2, 315-325.
14. Iijima, K., Kakeda, K., and Fukui, K. (1991) Identification and characterization of somatic rice chromosomes by imaging methods. Theor. Appl. Genet. 81, 597-605.
15. Kato, S., Hirose, T., Akiyama, Y., O'neill, C. M., and Fukui, K. (1997) Manual on the chromosome image analyzing system III, CHIAS III. Res. Report Hokuriku Natl. Agr. Exp. Stn. 36, 1-62.
16. Kato, S., and Fukui, K. (1998) Condensation pattern analysis using a newly developed chromosome image analyzing system (CHIAS III). Chromosome Res. 6, 473-479.
17. Khush, G. S., Singh, R. J., Sur, S. C., and Librojo, A. L. (1984) Primary trisomics of rice: Origin, morphology, cytology and use in linkage mapping. Genetics 107, 141-163.
18. Künzel, G., Korzun, L., and Meister, A. (2000) Cytologically integrated physical restriction fragment length polymorphism maps for the barley genome based on translocation breakpoints. Genetics 154, 397-412.
19. Kurata, N., Omura, T., and Iwata, N. (1981) Studies on centromere, chromomere and nucleolus in pachytene nuclei of rice, Oriyza sativa, microsporocytes. Cytorogia 46, 791-800.
20. Lorite, P., Aránega, A. E., Luque, F., and Palomeque, T. (1997) Analysis of the nucleoar organizing regions in the ant Tapinoma nigerrimum (Hymenoptera, Formicidae). Heredity 78, 578-582.
21. Nakayama, S., and Fukui, K. (1997) Quantitative chromosome mapping of small plant chromosomes by improved imaging on CHIAS II. Genes Genet. Syst. 72, 35-40.
22. Ohmido, N., and Fukui, K. (1997) Visual verification of close disposition between a rice A-genome specific DNA sequence (TrsA) and the telomere sequences. Plant Mol. Biol. 35, 963-968.
23. Ohmido, N., Akiyama, Y., and Fukui, K. (1998) Physical mapping of unique nucleotide sequences on identified rice chromosomes Plant Mol. Biol. 38, 1043-1052.
24. Ohmido, N., Kijima, K., Ashikawa, I., de Jong, J. H., and Fukui, K. (2001) Visualization of the terminal structure of rice chromosomes 6 and 12 using multicolor FISH to chromosomes and extended DNA fibers. Plant. Mol. Biol. 47, 413-421.
25. Peterson, D. G., Lapitan, N. L. V., and Stack, M. S. (1999) Localization of single- and low-copy sequences on tomato synaptonemal complex spreads using fluorescence in situ hybridization (FISH). Genetics 152, 427-439.
26. Rick, C. M., and Barton, D. W., (1954) Cytological and genetical identification of the primary trisomics of the tomato. Genetics 39, 640-666.
27. Ross, K. J., Fransz, P., and Jones, G. H. (1996) A light microscopic atlas of meiosis in Arabidopsis thaliana. Chromosome Res. 4, 507-516.
28. Sano, Y., and Sano, R. (1990) Variation of the intergenic spacer region of ribosomal DNA in cultivated and wild rice species. Genome 33, 209-218.
29. Shastry, S. V. S., Rangao, R. D. R., and Misra, R. N. (1960) Pachytene analysis in Oryza-I. Chromosome morphology in Oryza sativa. Indian J. Genet. Plant Breed. 20, 15-21.
30. Takaiwa, F., Kikuchi, S., and Oono, K. (1990) The complete nucleotide sequence of the intergenic spacer between 25S and 17S rDNAs in rice. Plant Mol. Biol. 15, 933-935.