The role of the minor groove substituents in indirect readout of DNA sequence by 434 repressor

Journal of Biological Chemistry

Volumn 278, Issue 15, 2003, Pages 12955-12960

  Mauro, Steven A ^b   Pawlowski, David ^b   Koudelka, Gerald B ^a  

^a UNIVERSITY AT BUFFALO   (United States)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

BIOSYNTHESIS; DNA; HYDROGEN BONDS; PROTEINS; STRUCTURE (COMPOSITION);

BINDING SITES;

BIOCHEMISTRY;

DNA; REPRESSOR PROTEIN; 434 REPRESSOR PROTEIN, BACTERIOPHAGE 434; 434-REPRESSOR PROTEIN, BACTERIOPHAGE 434; HYDROXYL RADICAL; VIRUS PROTEIN;

ARTICLE; BASE PAIRING; BINDING AFFINITY; BINDING SITE; DNA DETERMINATION; DNA PROTEIN COMPLEX; DNA SEQUENCE; DNA STRUCTURE; HYDROGEN BOND; PRIORITY JOURNAL; AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; CHEMISTRY; CIRCULAR DICHROISM; CONFORMATION; GENETICS; KINETICS; NUCLEOTIDE SEQUENCE; OSMOLARITY; PROTEIN CONFORMATION; THERMODYNAMICS;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; BASE PAIRING; BASE SEQUENCE; BINDING SITES; CIRCULAR DICHROISM; HYDROXYL RADICAL; KINETICS; NUCLEIC ACID CONFORMATION; OSMOLAR CONCENTRATION; PROTEIN CONFORMATION; REPRESSOR PROTEINS; THERMODYNAMICS; VIRAL PROTEINS;

EID: 0037968651     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M212667200     Document Type: Article

References (24)

1. Aggarwal, A., Rodgers, D. W., Drottar, M., Ptashne, M., and Harrison, S. C. (1988) Science 242, 899-907
2. Shimon, L. J. W., and Harrison, S. C. (1993) J. Mol. Biol. 232, 826-838
3. Koudelka, G. B., Harrison, S. C., and Ptashne, M. (1987) Nature 326, 886-888
4. Anderson, J. E., Ptashne, M., and Harrison, S. C. (1987) Nature 326, 846-852
5. Koudelka, G. B., and Carlson, P. (1992) Nature 355, 89-91
6. Koudelka, G. B. (1998) Nucleic Acids Res. 26, 669-675
7. Koudelka, G. B., Harbury, P. H., Harrison, S. C., and Ptashne, M. (1988) Proc. Natl. Acad. Sci. U. S. A. 85, 4633-4637
8. Joachimiak, A., Haran, T. E., and Sigler, P. B. (1994) EMBO J. 13, 367-372
9. Bell, A. C., and Koudelka, G. B. (1993) J. Mol. Biol. 234, 542-553
10. Price, M. A., and Tullius, T. D. (1992) Methods Enzymol. 212, 194-219
11. Duong, T. H., and Zakrzewska, K. (1998) J. Mol. Biol. 280, 31-39
12. Record, M. T., Jr., Lohman, T. M., and DeHaseth, P. L. (1977) J. Mol. Biol. 107, 145-158
13. Johnson B. B., Dahl, K. S., Tinoco, I., Ivanov, V. I., and Zhurkin, V. B. (1981) Biochemstry 20, 73-78
14. Shui, X., McFail-Isom, L., Hu, G. G., and Williams, L. D. (1998) Biochemistry 37, 8341-8355
15. Kilkuskie, R., Wood, N., Ringquist, S., Shinn, R., and Hanlon, S. (1988) Biochemistry 27, 4377-4386
16. Maibenco, D., Tang, P., Shinn, R., and Hanlon, S. (1989) Biopolymers 28, 549-571
17. Xuan, J. C., and Weber, I. T. (1992) Nucleic Acids Res. 20, 5457-5464
18. Shatzky-Schwartz, M., Arbuckle, N. D., Eisenstein, M., Rabinovich, D., Bareket-Samish, A., Haran, T. E., Luisi, B. F., and Shakked, Z. (1997) J. Mol. Biol. 267, 595-623
19. Phizicky, E. M., and Roberts, J. W. (1981) Cell 25, 259-267
20. Mollegaard, N. E., Bailly, C., Waring, M. J., and Nielsen, P. E. (1997) Nucleic Acids Res. 25, 3497-3502
21. Bailly, C., and Waring, M. J. (1998) Nucleic Acids Res. 26, 4309-4314
22. Bailly, C., Mollegaard, N. E., Nielsen, P. E., and Waring, M. J. (1995) EMBO J. 14, 2121-2131
23. Lankas, F., Cheatham, T. E., III, Spackova, N., Hobza, P., Langowski, J., and Sponer, J. (2002) Biophys. J. 82, 2592-2609
24. Harrison, S. C., and Aggarwal, A. K. (1990) Annu. Rev. Biochem. 59, 933-969