메뉴 건너뛰기




Volumn 149, Issue 5, 2003, Pages 1239-1247

Limitations of the widely used GAM42a and BET42a probes targeting bacteria in the Gammaproteobacteria radiation

Author keywords

[No Author keywords available]

Indexed keywords

DNA 16S; DNA BASE; NUCLEOTIDE; RNA 23S; SPACER DNA;

EID: 0037854314     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.26112-0     Document Type: Review
Times cited : (32)

References (33)
  • 2
    • 0025099312 scopus 로고
    • Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
    • Amann, R. I., Krumholz, L. & Stahl, D. A. (1990). Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J Bacteriol 172, 762-770.
    • (1990) J. Bacteriol. , vol.172 , pp. 762-770
    • Amann, R.I.1    Krumholz, L.2    Stahl, D.A.3
  • 3
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., Ludwig, W. & Schleifer, K.-H. (1995). Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59, 143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.-H.3
  • 4
    • 0035370087 scopus 로고    scopus 로고
    • The identification of microorganisms by fluorescence in situ hybridisation
    • Amann, R., Fuchs, B. M. & Behrens, S. (2001). The identification of microorganisms by fluorescence in situ hybridisation. Curr Opin Biotechnol 12, 231-236.
    • (2001) Curr. Opin. Biotechnol. , vol.12 , pp. 231-236
    • Amann, R.1    Fuchs, B.M.2    Behrens, S.3
  • 5
    • 0036667419 scopus 로고    scopus 로고
    • Filamentous Chloroflexi (green non-sulfur bacteria) are abundant in wastewater treatment processes with biological nutrient removal
    • Björnsson, L., Hugenholtz, P., Tyson, G. W. & Blackall, L. L. (2002). Filamentous Chloroflexi (green non-sulfur bacteria) are abundant in wastewater treatment processes with biological nutrient removal. Microbiology 148, 2309-2318.
    • (2002) Microbiology , vol.148 , pp. 2309-2318
    • Björnsson, L.1    Hugenholtz, P.2    Tyson, G.W.3    Blackall, L.L.4
  • 6
    • 0029025721 scopus 로고
    • Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors
    • Bond, P. L., Hugenholtz, P., Keller, J. & Blackall, L. L. (1995). Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors. Appl Environ Microbiol 61, 1910-1916.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1910-1916
    • Bond, P.L.1    Hugenholtz, P.2    Keller, J.3    Blackall, L.L.4
  • 7
    • 0032883808 scopus 로고    scopus 로고
    • Identification of some of the major groups of bacteria in efficient and nonefficient biological phosphorus removal activated sludge systems
    • Bond, P. L., Erhart, R., Wagner, M., Keller, J. & Blackall, L. L. (1999a). Identification of some of the major groups of bacteria in efficient and nonefficient biological phosphorus removal activated sludge systems. Appl Environ Microbiol 65, 4077-4084.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4077-4084
    • Bond, P.L.1    Erhart, R.2    Wagner, M.3    Keller, J.4    Blackall, L.L.5
  • 8
    • 0032942666 scopus 로고    scopus 로고
    • Bio-P and non-bio-P bacteria identification by a novel microbial approach
    • Bond, P. L., Keller, J. & Blackall, L. L. (1999b). Bio-P and non-bio-P bacteria identification by a novel microbial approach. Water Sci Technol 39, 13-20.
    • (1999) Water Sci. Technol. , vol.39 , pp. 13-20
    • Bond, P.L.1    Keller, J.2    Blackall, L.L.3
  • 9
    • 0019513663 scopus 로고
    • Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli
    • Brosius, J., Dull, T. L., Steeter, D. D. & Noller, H. F. (1981). Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J Mol Biol 148, 107-127.
    • (1981) J. Mol. Biol. , vol.148 , pp. 107-127
    • Brosius, J.1    Dull, T.L.2    Steeter, D.D.3    Noller, H.F.4
  • 10
    • 0034051181 scopus 로고    scopus 로고
    • Identification of polyphosphate-accumulating organisms and design of 16S rRNA-directed probes for their detection and quantitation
    • Crocetti, G. R., Hugenholtz, P., Bond, P. L., Schuler, A., Keller, J., Jenkins, D. & Blackall, L. L. (2000). Identification of polyphosphate-accumulating organisms and design of 16S rRNA-directed probes for their detection and quantitation. Appl Environ Microbiol 66, 1175-1182.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1175-1182
    • Crocetti, G.R.1    Hugenholtz, P.2    Bond, P.L.3    Schuler, A.4    Keller, J.5    Jenkins, D.6    Blackall, L.L.7
  • 11
    • 0041461927 scopus 로고    scopus 로고
    • Glycogen-accumulating organisms in laboratory-scale and full-scale wastewater treatment processes
    • Crocetti, G. R., Banfield, J. F., Keller, J., Bond, P. L. & Blackall, L. L. (2002). Glycogen-accumulating organisms in laboratory-scale and full-scale wastewater treatment processes. Microbiology 148, 3353-3364.
    • (2002) Microbiology , vol.148 , pp. 3353-3364
    • Crocetti, G.R.1    Banfield, J.F.2    Keller, J.3    Bond, P.L.4    Blackall, L.L.5
  • 12
    • 0035016315 scopus 로고    scopus 로고
    • Characterisation of the microbial 16S rDNA diversity of an aerobic phosphorus-removal ecosystem and monitoring of its transition to nitrate respiration
    • Dabert, P., Sialve, B., Delgenès, J.-P., Moletta, R. & Godon, J.-J. (2001). Characterisation of the microbial 16S rDNA diversity of an aerobic phosphorus-removal ecosystem and monitoring of its transition to nitrate respiration. Appl Microbiol Biotechnol 55, 500-509.
    • (2001) Appl. Microbiol. Biotechnol. , vol.55 , pp. 500-509
    • Dabert, P.1    Sialve, B.2    Delgenès, J.-P.3    Moletta, R.4    Godon, J.-J.5
  • 13
    • 0344172842 scopus 로고    scopus 로고
    • The domain-specific probe EUB338 is insufficient for the detection of all bacteria: Development and evaluation of a more comprehensive probe set
    • Daims, H., Brühl, A., Amann, R., Schleifer, K.-H. & Wagner, M. (1999). The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22, 434-444.
    • (1999) Syst. Appl. Microbiol. , vol.22 , pp. 434-444
    • Daims, H.1    Brühl, A.2    Amann, R.3    Schleifer, K.-H.4    Wagner, M.5
  • 14
    • 0024507744 scopus 로고
    • Phylogenetic stains: Ribosomal RNA based probes for the identification of single cells
    • DeLong, E. F., Wickham, G. S. & Pace, N. R. (1989). Phylogenetic stains: ribosomal RNA based probes for the identification of single cells. Science 243, 1360-1363.
    • (1989) Science , vol.243 , pp. 1360-1363
    • DeLong, E.F.1    Wickham, G.S.2    Pace, N.R.3
  • 15
    • 0035163571 scopus 로고    scopus 로고
    • Investigation of candidate division TM7, a recently recognized major lineage of the Domain Bacteria with no known pure-culture representatives
    • Hugenholtz, P., Tyson, G. W., Webb, R. I., Wagner, A. M. & Blackall, L. L. (2001). Investigation of candidate division TM7, a recently recognized major lineage of the Domain Bacteria with no known pure-culture representatives. Appl Environ Microbiol 67, 411-419.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 411-419
    • Hugenholtz, P.1    Tyson, G.W.2    Webb, R.I.3    Wagner, A.M.4    Blackall, L.L.5
  • 16
    • 0032147190 scopus 로고    scopus 로고
    • Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrococcus mobilis and Nitrospira-like bacteria as dominant populations
    • Juretschko, S., Timmermann, G., Schmid, M., Schleifer, K.-H., Pommerening-Röser, A., Koops, H.-P. & Wagner, M. (1998). Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrococcus mobilis and Nitrospira-like bacteria as dominant populations. Appl Environ Microbiol 64, 3042-3051.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3042-3051
    • Juretschko, S.1    Timmermann, G.2    Schmid, M.3    Schleifer, K.-H.4    Pommerening-Röser, A.5    Koops, H.-P.6    Wagner, M.7
  • 17
    • 0036860619 scopus 로고    scopus 로고
    • Diversity and distribution of a deeply branched novel proteobacterial group found in anaerobic-aerobic activated sludge processes
    • Kong, Y., Ong, S. L., Ng, W. J. & Liu, W.-T. (2002). Diversity and distribution of a deeply branched novel proteobacterial group found in anaerobic-aerobic activated sludge processes. Environ Microbiol 4, 753-757.
    • (2002) Environ. Microbiol. , vol.4 , pp. 753-757
    • Kong, Y.1    Ong, S.L.2    Ng, W.J.3    Liu, W.-T.4
  • 18
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Edited by E. Stackebrandt & M. Goodfellow. London: Wiley
    • Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. London: Wiley.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 19
    • 0037995022 scopus 로고
    • Oligonucleotide probes for in situ hybridisation
    • Edited by J. M. Polak & J. O. McGee. Oxford: Oxford University Press
    • Lathe, R. (1990). Oligonucleotide probes for in situ hybridisation. In In situ Hybridisation - Principles and Practice, pp. 71-80. Edited by J. M. Polak & J. O. McGee. Oxford: Oxford University Press.
    • (1990) In Situ Hybridisation - Principles and Practice , pp. 71-80
    • Lathe, R.1
  • 20
    • 0034024398 scopus 로고    scopus 로고
    • Microbial community changes in biological phosphate-removal systems on altering sludge phosphorus content
    • Liu, W.-T., Linning, K. D., Nakamura, K., Mino, T., Matsuo, T. & Forney, L. J. (2000). Microbial community changes in biological phosphate-removal systems on altering sludge phosphorus content. Microbiology 146, 1099-1107.
    • (2000) Microbiology , vol.146 , pp. 1099-1107
    • Liu, W.-T.1    Linning, K.D.2    Nakamura, K.3    Mino, T.4    Matsuo, T.5    Forney, L.J.6
  • 21
    • 0035210650 scopus 로고    scopus 로고
    • In situ identification of polyphosphate- and polyhydroxy-alkanoate-accumulating traits for microbial populations in a biological phosphorus removal process
    • Liu, W.-T., Nielsen, A. T., Wu, J.-H., Tsai, C.-S., Matsuo, T. & Molin, S. (2001). In situ identification of polyphosphate- and polyhydroxy-alkanoate-accumulating traits for microbial populations in a biological phosphorus removal process. Environ Microbiol 3, 110-122.
    • (2001) Environ. Microbiol. , vol.3 , pp. 110-122
    • Liu, W.-T.1    Nielsen, A.T.2    Wu, J.-H.3    Tsai, C.-S.4    Matsuo, T.5    Molin, S.6
  • 22
    • 0003086130 scopus 로고    scopus 로고
    • Activated sludge: Molecular techniques for determining community composition
    • Edited by G. Bitton. New York: Wiley
    • Loy, A., Daims, H. & Wagner, M. (2002). Activated sludge: molecular techniques for determining community composition. In The Encyclopedia of Environmental Microbiology, pp. 26-43. Edited by G. Bitton. New York: Wiley.
    • (2002) The Encyclopedia of Environmental Microbiology , pp. 26-43
    • Loy, A.1    Daims, H.2    Wagner, M.3
  • 23
    • 0002803581 scopus 로고    scopus 로고
    • Overview: A phylogenetic backbone and taxonomic framework for procaryotic systematics
    • Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer
    • Ludwig, W. & Klenk, H.-P. (2001). Overview: a phylogenetic backbone and taxonomic framework for procaryotic systematics. In Bergey's Manual of Systematic Bacteriology, pp. 49-65. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
    • (2001) Bergey's Manual of Systematic Bacteriology , pp. 49-65
    • Ludwig, W.1    Klenk, H.-P.2
  • 24
    • 0029143037 scopus 로고
    • Comparative analysis of 23S rRNA from Proteobacteria
    • 14 other authors
    • Ludwig, W., Rosselló-Mora, R., Aznar, R. & 14 other authors (1995). Comparative analysis of 23S rRNA from Proteobacteria. Syst Appl Microbiol 18, 164-188.
    • (1995) Syst. Appl. Microbiol. , vol.18 , pp. 164-188
    • Ludwig, W.1    Rosselló-Mora, R.2    Aznar, R.3
  • 25
    • 0027068041 scopus 로고
    • Phylogenetic oligonucleotide probes for the major subclasses of proteobacteria: Problems and solutions
    • Manz, W., Amann, R., Ludwig, W., Wagner, M. & Schleifer, K.-H. (1992). Phylogenetic oligonucleotide probes for the major subclasses of proteobacteria: problems and solutions. Syst Appl Microbiol 15, 593-600.
    • (1992) Syst. Appl. Microbiol. , vol.15 , pp. 593-600
    • Manz, W.1    Amann, R.2    Ludwig, W.3    Wagner, M.4    Schleifer, K.-H.5
  • 26
    • 0032985537 scopus 로고    scopus 로고
    • Identification of a novel group of bacteria in sludge from a deteriorated biological phosphorus removal reactor
    • Nielsen, A. T., Liu, W.-T., Filipe, C., Grady, L., Molin, S. & Stahl, D. A. (1999). Identification of a novel group of bacteria in sludge from a deteriorated biological phosphorus removal reactor. Appl Environ Microbiol 65, 1251-1258.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1251-1258
    • Nielsen, A.T.1    Liu, W.-T.2    Filipe, C.3    Grady, L.4    Molin, S.5    Stahl, D.A.6
  • 29
    • 0035210373 scopus 로고    scopus 로고
    • 16S-23S rDNA intergenic spacer and 23S rDNA of anaerobic ammonium-oxidizing bacteria: Implications for phylogeny and in situ detection
    • Schmid, M., Schmitz-Esser, S., Jetten, M. S. M. & Wagner, M. (2001). 16S-23S rDNA intergenic spacer and 23S rDNA of anaerobic ammonium-oxidizing bacteria: implications for phylogeny and in situ detection. Environ Microbiol 3, 450-459.
    • (2001) Environ. Microbiol. , vol.3 , pp. 450-459
    • Schmid, M.1    Schmitz-Esser, S.2    Jetten, M.S.M.3    Wagner, M.4
  • 30
    • 0027299353 scopus 로고
    • Probing activated sludge with oligonucleotides specific for proteo-bacteria: Inadequacy of culture-dependent methods for describing microbial community structure
    • Wagner, M., Amann, R., Lemmer, H. & Schleifer, K.-H. (1993). Probing activated sludge with oligonucleotides specific for proteo-bacteria: Inadequacy of culture-dependent methods for describing microbial community structure. Appl Environ Microbiol 59, 1520-1525.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1520-1525
    • Wagner, M.1    Amann, R.2    Lemmer, H.3    Schleifer, K.-H.4
  • 31
    • 0028569160 scopus 로고
    • In situ analysis of microbial consortia in activated sludge using fluorescently labelled, rRNA-targeted oligonucleotide probes and confocal scanning laser microscopy
    • Wagner, M., Abmus, B., Hartmann, A., Hutzler, P. & Amann, R. (1994a). In situ analysis of microbial consortia in activated sludge using fluorescently labelled, rRNA-targeted oligonucleotide probes and confocal scanning laser microscopy. J Microsc 176, 181-187.
    • (1994) J. Microsc. , vol.176 , pp. 181-187
    • Wagner, M.1    Abmus, B.2    Hartmann, A.3    Hutzler, P.4    Amann, R.5
  • 32
    • 0028271364 scopus 로고
    • Development of an rRNA-targeted oligonucleotide probe specific for the genus Acinetobacter and its application for in situ monitoring in activated sludge
    • Wagner, M., Erhart, R., Manz, W., Amann, R., Lemmer, H., Wedi, D. & Schleiffer, K.-H. (1994b). Development of an rRNA-targeted oligonucleotide probe specific for the genus Acinetobacter and its application for in situ monitoring in activated sludge. Appl Environ Microbiol 60, 792-800.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 792-800
    • Wagner, M.1    Erhart, R.2    Manz, W.3    Amann, R.4    Lemmer, H.5    Wedi, D.6    Schleiffer, K.-H.7
  • 33
    • 0031854206 scopus 로고    scopus 로고
    • Rapid purification of DNA from soil for molecular biodiversity analysis
    • Yeates, C. & Gillings, M. R. (1998). Rapid purification of DNA from soil for molecular biodiversity analysis. Lett Appl Microbiol 27, 49-53.
    • (1998) Lett. Appl. Microbiol. , vol.27 , pp. 49-53
    • Yeates, C.1    Gillings, M.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.