-
2
-
-
0026785970
-
Structure and identity of a late-replicating and transcriptionally active gene
-
Benard M, Pallotta D, Pierron G. (1992) Structure and identity of a late-replicating and transcriptionally active gene. Exp Cell Res.; 201: 506-13.
-
(1992)
Exp Cell Res
, vol.201
, pp. 506-513
-
-
Benard, M.1
Pallotta, D.2
Pierron, G.3
-
3
-
-
0029912405
-
Peptide aldehyde complexes with wheat serine carboxypeptidase II: Implications for the catalytic mechanism and substrate specificity
-
Bullock TL, Breddam K, Remington SJ. (1996) Peptide aldehyde complexes with wheat serine carboxypeptidase II: implications for the catalytic mechanism and substrate specificity. J Mol Biol.; 255: 714-25.
-
(1996)
J Mol Biol
, vol.255
, pp. 714-725
-
-
Bullock, T.L.1
Breddam, K.2
Remington, S.J.3
-
4
-
-
0036281682
-
The 1.4 Å crystal structure of kumamolysin: A thermostable serine-carboxyl-type proteinase
-
Comellas-Bigler M, Fuentes-Prior P, Maskos K, Huber R, Oyama H, Uchida K, Dunn BM, Oda K, Bode W. (2002) The 1.4 Å crystal structure of kumamolysin: a thermostable serine-carboxyl-type proteinase. Structure (Camb).; 10: 865-76.
-
(2002)
Structure (Camb)
, vol.10
, pp. 865-876
-
-
Comellas-Bigler, M.1
Fuentes-Prior, P.2
Maskos, K.3
Huber, R.4
Oyama, H.5
Uchida, K.6
Dunn, B.M.7
Oda, K.8
Bode, W.9
-
5
-
-
0025290527
-
The structure and function of the aspartic proteinases
-
Davies DR. (1990) The structure and function of the aspartic proteinases. Annu Rev Biophys Biophys Chem.; 19: 189-215.
-
(1990)
Annu Rev Biophys Biophys Chem
, vol.19
, pp. 189-215
-
-
Davies, D.R.1
-
6
-
-
0022273818
-
The 1.8 Å structure of the complex between chymostatin and Streptomyces griseus protease A. A model for serine protease catalytic tetrahedral intermediates
-
Delbaere LT, Brayer GD. (1985) The 1.8 Å structure of the complex between chymostatin and Streptomyces griseus protease A. A model for serine protease catalytic tetrahedral intermediates. J Mol Biol.; 183: 89-103.
-
(1985)
J Mol Biol
, vol.183
, pp. 89-103
-
-
Delbaere, L.T.1
Brayer, G.D.2
-
7
-
-
0025838697
-
Three-dimensional structure of holo 3-alpha, 20-beta-hydroxysteroid dehydrogenase: A member of a short-chain dehydrogenase family
-
Ghosh D, Weeks CM, Grochulski P, Duax WL, Erman M, Rimsay RL, Orr JC. (1991) Three-dimensional structure of holo 3-alpha, 20-beta-hydroxysteroid dehydrogenase: a member of a short-chain dehydrogenase family. Proc Natl Acad Sci U S A.; 88: 10064-8.
-
(1991)
Proc Natl Acad Sci U S A
, vol.88
, pp. 10064-10068
-
-
Ghosh, D.1
Weeks, C.M.2
Grochulski, P.3
Duax, W.L.4
Erman, M.5
Rimsay, R.L.6
Orr, J.C.7
-
8
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm L, Sander C. (1993) Protein structure comparison by alignment of distance matrices. J Mol Biol.; 233: 123-38.
-
(1993)
J Mol Biol
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
9
-
-
0029809254
-
Substrate specificities of pepstatin-insensitive carboxyl proteinases from gram-negative bacteria
-
Ito M, Dunn BM, Oda K. (1996) Substrate specificities of pepstatin-insensitive carboxyl proteinases from gram-negative bacteria. J Biochem (Tokyo).; 120: 845-50.
-
(1996)
J Biochem (Tokyo)
, vol.120
, pp. 845-850
-
-
Ito, M.1
Dunn, B.M.2
Oda, K.3
-
10
-
-
0033051346
-
Identification of carboxyl residues in pepstatin-insensitive carboxyl proteinase from Pseudomonas sp. 101 that participate in catalysis and substrate binding
-
Ito M, Narutaki S, Uchida K, Oda K. (1999) Identification of carboxyl residues in pepstatin-insensitive carboxyl proteinase from Pseudomonas sp. 101 that participate in catalysis and substrate binding. J Biochem (Tokyo).; 125: 210-6.
-
(1999)
J Biochem (Tokyo)
, vol.125
, pp. 210-216
-
-
Ito, M.1
Narutaki, S.2
Uchida, K.3
Oda, K.4
-
11
-
-
0034916518
-
Mouse gene knockout models for the CLN2 and CLN3 forms of ceroid lipofuscinosis
-
Katz ML, Johnson GS. (2001) Mouse gene knockout models for the CLN2 and CLN3 forms of ceroid lipofuscinosis. Eur J Paediatr Neurol.; 5 [Suppl A): 109-14.
-
(2001)
Eur J Paediatr Neurol
, vol.5
, Issue.SUPPL. A
, pp. 109-114
-
-
Katz, M.L.1
Johnson, G.S.2
-
12
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis PJ. (1991) MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J Appl Crystallogr.; 24: 946-50.
-
(1991)
J Appl Crystallogr
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
13
-
-
0032578355
-
The 0.78 Å structure of a serine protease: Bacillus lentus subtilisin
-
Kuhn P, Knapp M, Soltis SM, Ganshaw G, Thoene M, Bott R. (1998) The 0.78 Å structure of a serine protease: Bacillus lentus subtilisin. Biochemistry.; 37: 13446-52.
-
(1998)
Biochemistry
, vol.37
, pp. 13446-13452
-
-
Kuhn, P.1
Knapp, M.2
Soltis, S.M.3
Ganshaw, G.4
Thoene, M.5
Bott, R.6
-
14
-
-
0000367534
-
Pepstatin-insensitive carboxyl proteinase: A biochemical marker for late lysosomes in Amoeba proteus
-
Kwon HK, Kim H, Ahn TI. (1999) Pepstatin-insensitive carboxyl proteinase: a biochemical marker for late lysosomes in Amoeba proteus. Korean J Biol Sci.; 3: 221-8.
-
(1999)
Korean J Biol Sci
, vol.3
, pp. 221-228
-
-
Kwon, H.K.1
Kim, H.2
Ahn, T.I.3
-
15
-
-
0035910463
-
The human CLN2 protein/tripeptidyl-peptidase I is a serine protease that autoactivates at acidic pH
-
Lin L, Sohar I, Lackland H, Lobel P. (2001) The human CLN2 protein/tripeptidyl-peptidase I is a serine protease that autoactivates at acidic pH. J Biol Chem.; 276: 2249-55.
-
(2001)
J Biol Chem
, vol.276
, pp. 2249-2255
-
-
Lin, L.1
Sohar, I.2
Lackland, H.3
Lobel, P.4
-
16
-
-
0016723519
-
X-ray crystallographic study of boronic acid adducts with subtilisin BPN′ (Novo) A model for the catalytic transition state
-
Matthews DA, Alden RA, Birktoft JJ, Freer ST, Kraut J. (1975) X-ray crystallographic study of boronic acid adducts with subtilisin BPN′ (Novo) A model for the catalytic transition state. J Biol Chem.; 250: 7120-6.
-
(1975)
J Biol Chem
, vol.250
, pp. 7120-7126
-
-
Matthews, D.A.1
Alden, R.A.2
Birktoft, J.J.3
Freer, S.T.4
Kraut, J.5
-
17
-
-
0027255527
-
A left-handed crossover involved in amidohydrolase catalysis. Crystal structure of Erwinia chrysanthemi L-asparaginase with bound L-aspartate
-
Miller M, Rao JKM, Wlodawer A, Gribskov MR. (1993) A left-handed crossover involved in amidohydrolase catalysis. Crystal structure of Erwinia chrysanthemi L-asparaginase with bound L-aspartate. FEBS Lett.; 328: 275-9.
-
(1993)
FEBS Lett
, vol.328
, pp. 275-279
-
-
Miller, M.1
Rao, J.K.M.2
Wlodawer, A.3
Gribskov, M.R.4
-
18
-
-
0027446449
-
Purification and characterization of kumamolysin, a novel thermostable pepstatin-insensitive carboxyl proteinase from Bacillus novosp. MN-32
-
Murao S, Ohkuni K, Nagao M, Hirayama K, Fukuhara K, Oda K, Oyama H, Shin T. (1993) Purification and characterization of kumamolysin, a novel thermostable pepstatin-insensitive carboxyl proteinase from Bacillus novosp. MN-32. J Biol Chem.; 268: 349-55.
-
(1993)
J Biol Chem
, vol.268
, pp. 349-355
-
-
Murao, S.1
Ohkuni, K.2
Nagao, M.3
Hirayama, K.4
Fukuhara, K.5
Oda, K.6
Oyama, H.7
Shin, T.8
-
19
-
-
0033049372
-
Subsite preferences of pepstatin-insensitive carboxyl proteinases from bacteria
-
Narutaki S, Dunn BM, Oda K. (1999) Subsite preferences of pepstatin-insensitive carboxyl proteinases from bacteria. J Biochem (Tokyo).; 125: 75-81.
-
(1999)
J Biochem (Tokyo)
, vol.125
, pp. 75-81
-
-
Narutaki, S.1
Dunn, B.M.2
Oda, K.3
-
20
-
-
0037459099
-
Structural and enzymatic characterization of physarolisin (formerly physaropepsin) proves that it is a unique serine-carboxyl proteinase
-
Nishii W, Ueki T, Miyashita R, Kojima M, Kim YT, Sasaki N, Murakami-Murofushi K, Takahashi K. (2003) Structural and enzymatic characterization of physarolisin (formerly physaropepsin) proves that it is a unique serine-carboxyl proteinase. Biochem Biophys Res Commun.; 301: 1023-9.
-
(2003)
Biochem Biophys Res Commun
, vol.301
, pp. 1023-1029
-
-
Nishii, W.1
Ueki, T.2
Miyashita, R.3
Kojima, M.4
Kim, Y.T.5
Sasaki, N.6
Murakami-Murofushi, K.7
Takahashi, K.8
-
21
-
-
0023154620
-
Purification and properties of a pepstatin-insensitive carboxyl proteinase from a gram-negative bacterium
-
Oda K, Sugitani M, Fukuhara K, Murao S. (1987) Purification and properties of a pepstatin-insensitive carboxyl proteinase from a gram-negative bacterium. Biochim Biophys Acta.; 923: 463-9.
-
(1987)
Biochim Biophys Acta
, vol.923
, pp. 463-469
-
-
Oda, K.1
Sugitani, M.2
Fukuhara, K.3
Murao, S.4
-
22
-
-
0026555406
-
Substrate specificity and kinetic properties of pepstatin-insensitive carboxyl proteinase from Pseudomonas sp. No. 101
-
Oda K, Nakatani H, Dunn BM. (1992) Substrate specificity and kinetic properties of pepstatin-insensitive carboxyl proteinase from Pseudomonas sp. No. 101. Biochim Biophys Acta.; 1120: 208-14.
-
(1992)
Biochim Biophys Acta
, vol.1120
, pp. 208-214
-
-
Oda, K.1
Nakatani, H.2
Dunn, B.M.3
-
23
-
-
0028046586
-
Cloning, nucleotide sequence, and expression of an isovaleryl pepstatin-insensitive carboxyl proteinase gene from Pseudomonas sp. 101
-
Oda K, Takahashi T, Tokuda Y, Shibano Y, Takahashi S. (1994) Cloning, nucleotide sequence, and expression of an isovaleryl pepstatin-insensitive carboxyl proteinase gene from Pseudomonas sp. 101. J Biol Chem.; 269: 26518-24.
-
(1994)
J Biol Chem
, vol.269
, pp. 26518-26524
-
-
Oda, K.1
Takahashi, T.2
Tokuda, Y.3
Shibano, Y.4
Takahashi, S.5
-
24
-
-
0033814391
-
Subsite preferences of pepstatin-insensitive carboxyl proteinases from prokaryotes: Kumamolysin, a thermostable pepstatin-insensitive carboxyl proteinase
-
Oda K, Ogasawara S, Oyama H, Dunn BM. (2000) Subsite preferences of pepstatin-insensitive carboxyl proteinases from prokaryotes: kumamolysin, a thermostable pepstatin-insensitive carboxyl proteinase. J Biochem (Tokyo).; 128: 499-507.
-
(2000)
J Biochem (Tokyo)
, vol.128
, pp. 499-507
-
-
Oda, K.1
Ogasawara, S.2
Oyama, H.3
Dunn, B.M.4
-
25
-
-
0042094568
-
A proposed model for the late-infantile neuronal ceroid lipofuscinosis (Batten Disease) protein CLN2
-
Orry A, Wallace BA. (1999) A proposed model for the late-infantile neuronal ceroid lipofuscinosis (Batten Disease) protein CLN2. Protein Pept Lett.; 6: 1-5.
-
(1999)
Protein Pept Lett
, vol.6
, pp. 1-5
-
-
Orry, A.1
Wallace, B.A.2
-
26
-
-
0033600764
-
Identification of catalytic residues of pepstatin-insensitive carboxyl proteinases from prokaryotes by site-directed mutagenesis
-
Oyama H, Abe S, Ushiyama S, Takahashi S, Oda K. (1999) Identification of catalytic residues of pepstatin-insensitive carboxyl proteinases from prokaryotes by site-directed mutagenesis. J Biol Chem.; 274: 27815-22.
-
(1999)
J Biol Chem
, vol.274
, pp. 27815-27822
-
-
Oyama, H.1
Abe, S.2
Ushiyama, S.3
Takahashi, S.4
Oda, K.5
-
27
-
-
0036090236
-
A CLN2-related and thermostable serine-carboxyl proteinase, kumamolysin: Cloning, expression, and identification of catalytic serine residue
-
Oyama H, Hamada T, Ogasawara S, Uchida K, Murao S, Beyer BB, Dunn BM, Oda K. (2002) A CLN2-related and thermostable serine-carboxyl proteinase, kumamolysin: cloning, expression, and identification of catalytic serine residue. J Biochem (Tokyo).; 131: 757-65.
-
(2002)
J Biochem (Tokyo)
, vol.131
, pp. 757-765
-
-
Oyama, H.1
Hamada, T.2
Ogasawara, S.3
Uchida, K.4
Murao, S.5
Beyer, B.B.6
Dunn, B.M.7
Oda, K.8
-
28
-
-
0032897884
-
Tripeptidyl-peptidase I is apparently the CLN2 protein absent in classical late-infantile neuronal ceroid lipofuscinosis
-
Rawlings ND, Barrett AJ. (1999) Tripeptidyl-peptidase I is apparently the CLN2 protein absent in classical late-infantile neuronal ceroid lipofuscinosis. Biochim Biophys Acta.; 1429: 496-500.
-
(1999)
Biochim Biophys Acta
, vol.1429
, pp. 496-500
-
-
Rawlings, N.D.1
Barrett, A.J.2
-
29
-
-
0015497445
-
Subtilisin; a stereochemical mechanism involving transition-state stabilization
-
Robertus JD, Kraut J, Alden RA, Birktoft JJ. (1972) Subtilisin; a stereochemical mechanism involving transition-state stabilization. Biochemistry.; 11: 4293-303.
-
(1972)
Biochemistry
, vol.11
, pp. 4293-4303
-
-
Robertus, J.D.1
Kraut, J.2
Alden, R.A.3
Birktoft, J.J.4
-
30
-
-
0034727087
-
The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum
-
Ruepp A, Grami W, Santos-Martinez M-L, Koretke KK, Volker C, Mewes HW, Frishman D, Stocker S, Lupas AN, Baumeister W. (2000) The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum. Nature.; 407: 508-13.
-
(2000)
Nature
, vol.407
, pp. 508-513
-
-
Ruepp, A.1
Grami, W.2
Santos-Martinez, M.-L.3
Koretke, K.K.4
Volker, C.5
Mewes, H.W.6
Frishman, D.7
Stocker, S.8
Lupas, A.N.9
Baumeister, W.10
-
31
-
-
0024563996
-
Periplasmic binding protein structure and function. Refined X-ray structures of the leucine/isoleucine/valine-binding protein and its complex with leucine
-
Sack JS, Saper MA, Quiocho FA. (1989) Periplasmic binding protein structure and function. Refined X-ray structures of the leucine/isoleucine/valine-binding protein and its complex with leucine. J Mol Biol.; 206: 171-91.
-
(1989)
J Mol Biol
, vol.206
, pp. 171-191
-
-
Sack, J.S.1
Saper, M.A.2
Quiocho, F.A.3
-
32
-
-
0014211618
-
On the size of the active site in proteases. I. Papain
-
Schechter I, Berger A. (1967) On the size of the active site in proteases. I. Papain. Biochem Biophys Res Commun.; 27: 157-62.
-
(1967)
Biochem Biophys Res Commun
, vol.27
, pp. 157-162
-
-
Schechter, I.1
Berger, A.2
-
33
-
-
0031719820
-
Substrate specificity of pepstatin-insensitive carboxyl proteinase from Bacillus coagulans J-4
-
Shibata M, Dunn BM, Oda K. (1998) Substrate specificity of pepstatin-insensitive carboxyl proteinase from Bacillus coagulans J-4. J Biochem (Tokyo).; 124: 642-7.
-
(1998)
J Biochem (Tokyo)
, vol.124
, pp. 642-647
-
-
Shibata, M.1
Dunn, B.M.2
Oda, K.3
-
34
-
-
0030866233
-
Association of mutations in a lysosomal protein with classical late-infantile neuronal ceroid lipofuscinosis
-
Sleat DE, Donnelly RJ, Lackland H, Liu CG, Sohar I, Pullarkat RK, Lobel P. (1997) Association of mutations in a lysosomal protein with classical late-infantile neuronal ceroid lipofuscinosis. Science.; 277: 1802-5.
-
(1997)
Science
, vol.277
, pp. 1802-1805
-
-
Sleat, D.E.1
Donnelly, R.J.2
Lackland, H.3
Liu, C.G.4
Sohar, I.5
Pullarkat, R.K.6
Lobel, P.7
-
35
-
-
0025778840
-
Atomic structure of acetylcholinesterase from Torpedo californica: A prototypic acetylcholine-binding protein
-
Sussman JL, Harel M, Frolow F, Oefner C, Goldman A, Toker L, Silman I. (1991) Atomic structure of acetylcholinesterase from Torpedo californica: a prototypic acetylcholine-binding protein. Science.; 253: 872-9.
-
(1991)
Science
, vol.253
, pp. 872-879
-
-
Sussman, J.L.1
Harel, M.2
Frolow, F.3
Oefner, C.4
Goldman, A.5
Toker, L.6
Silman, I.7
-
36
-
-
0037224864
-
Collagenolytic serine-carboxyl proteinase from Alicyclobacillus sendaiensis strain NTAP-1: Purification, characterization, gene cloning, and heterologous expression
-
Tsuruoka N, Nakayama T, Ashida M, Hemmi H, Nakao M, Minakata H, Oyama H, Oda K, Nishino T. (2003) Collagenolytic serine-carboxyl proteinase from Alicyclobacillus sendaiensis strain NTAP-1: Purification, characterization, gene cloning, and heterologous expression. Appl Environ Microbiol.; 69: 162-9.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 162-169
-
-
Tsuruoka, N.1
Nakayama, T.2
Ashida, M.3
Hemmi, H.4
Nakao, M.5
Minakata, H.6
Oyama, H.7
Oda, K.8
Nishino, T.9
-
37
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston RH et al. (2002) Initial sequencing and comparative analysis of the mouse genome. Nature.; 420: 520-62.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
-
38
-
-
0035033318
-
Carboxyl proteinase from Pseudomonas defines a novel faily of subtilisin-like enzymes
-
Wlodawer A, Li M, Dauter Z, Gustchina A, Uchida K, Oyama H, Dunn BM, Oda K. (2001a) Carboxyl proteinase from Pseudomonas defines a novel faily of subtilisin-like enzymes. Nat Struct Biol.; 8: 442-6.
-
(2001)
Nat Struct Biol
, vol.8
, pp. 442-446
-
-
Wlodawer, A.1
Li, M.2
Dauter, Z.3
Gustchina, A.4
Uchida, K.5
Oyama, H.6
Dunn, B.M.7
Oda, K.8
-
39
-
-
0035951107
-
Inhibitor complexes of the Pseudomonas serine-carboxyl proteinase
-
Wlodawer A, Li M, Gustchina A, Dauter Z, Uchida K, Oyama H, Goldfarb NE, Dunn BM, Oda K. (2001b) Inhibitor complexes of the Pseudomonas serine-carboxyl proteinase. Biochemistry.; 40: 15602-11.
-
(2001)
Biochemistry
, vol.40
, pp. 15602-15611
-
-
Wlodawer, A.1
Li, M.2
Gustchina, A.3
Dauter, Z.4
Uchida, K.5
Oyama, H.6
Goldfarb, N.E.7
Dunn, B.M.8
Oda, K.9
-
40
-
-
0014682668
-
Structure of subtilisin BPN′ at 2.5 Å resolution
-
Wright CS, Alden RA, Kraut J. (1969) Structure of subtilisin BPN′ at 2.5 Å resolution. Nature.; 221: 235-42.
-
(1969)
Nature
, vol.221
, pp. 235-242
-
-
Wright, C.S.1
Alden, R.A.2
Kraut, J.3
-
41
-
-
0015505837
-
Crystal structure of a subtilisin BPN′ complex with N-benzoyl-L-arginine
-
Wright CS, Alden RA, Kraut J. (1972) Crystal structure of a subtilisin BPN′ complex with N-benzoyl-L-arginine. J Mol Biol.; 66: 283-9.
-
(1972)
J Mol Biol
, vol.66
, pp. 283-289
-
-
Wright, C.S.1
Alden, R.A.2
Kraut, J.3
|