Expression analysis of subtractively enriched libraries (EASEL): A widely applicable approach to the identification of differentially expressed genes

Journal of Biochemical and Biophysical Methods

Volumn 57, Issue 1, 2003, Pages 17-33

  Lombardi, M Paola ^a   Van Den Hoff, Maurice J B ^a   Ruijter, Jan M ^a   Luijerink, Marjanka ^a,b   Buffing, Anita A ^a   Markman, Marry W ^a   Moorman, Antoon F M ^a   Lekanne Deprez, Ronald H ^a  

^a ACADEMIC MEDICAL CENTER   (Netherlands)

^b UNIVERSITY MEDICAL CENTER UTRECHT   (Netherlands)

Author keywords

Cardiovascular development; EST; Gene expression; Macroarrays; SAGE; Subtractive hybridization

Indexed keywords

FOLLISTATIN; METALLOPROTEINASE;

ANALYTIC METHOD; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; EMBRYO DEVELOPMENT; EXPRESSION ANALYSIS OF SUBTRACTIVELY ENRICHED LIBRARIES; GENE EXPRESSION; GENE IDENTIFICATION; HEART; HYBRIDIZATION; NONHUMAN; PRIORITY JOURNAL; RAT; UPREGULATION; VALIDATION PROCESS;

SALVIA;

EID: 0037756775     PISSN: 0165022X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0165-022X(03)00083-6     Document Type: Article

References (21)

1. Ewing B., Green P. Analysis of expressed sequence tags indicates 35,000 human genes. Nat. Genet. 25:2000;232-234.
2. Roest Crollius H., Jaillon O., Bernot A., Dasilva C., Bouneau L., Fischer C.et al. Estimate of human gene number provided by genome-wide analysis using Tetradon nigroviridis DNA sequence. Nat. Genet. 25:2000;235-238.
3. Aparicio S.A.J.R. How to count...human genes. Nat. Genet. 25:2000;129-130.
4. Alberts B., Bray D., Lewis J., Raff M., Roberts K., Warson J.D. Robertson M. Molecular biology of the cell. 1994;369 Garland, New York.
5. Velculescu V.E., Madden S.L., Zhang L., Lash A.E., Yu J., Rago C.et al. Analysis of human transcriptomes. Nat. Genet. 23:1999;387-388.
6. Diatchenko L., Yun-Fai C.L., Campbell A.P., Chenchik A., Moqdam F., Huang B.et al. Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proc. Natl. Acad. Sci. U. S. A. 93:1996;6025-6030.
7. Velculescu V.E., Zhang L., Vogelstein B., Kinzler K.W. Serial analysis of gene expression. Science. 270:1995;484-487.
8. Spinella D.G., Bernardino A.K., Redding A.C., Koutz P., Wei Y., Pratt E.K.et al. Tandem arrayed ligation of expressed sequenced tags (TALEST): a new method for generating global gene expression profiles. Nucleic Acid Res. 27(18):1999;22e.
9. Kal A.J., van Zonneveld A.J., Benes V., van den Berg M., Koerkamp M.G., Albermann K.et al. Dynamics of gene expression revealed by comparison of serial analysis of gene expression transcript profiles from yeast grown on two different carbon sources. Mol. Biol. Cell. 10:1999;1859-1872.
10. Wang X., Feuerstein G. Suppression subtractive hybridization: application in the discovery of novel pharmacological probes. Pharmacogenomics. 1:2000;1-8.
11. Chirgwin J.M., Przybyla A.E., MacDonald R.J., Rutter W.J. Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease. Biochemistry. 18:1979;5294-5299.
12. Brown P.O., Botstein D. Exploring the new world of the genome with DNA microarrays. Nat. Genet. 21:1999;33-37.
13. van Kampen A.H.C., van Schaik B.D.C., Pauws E., Michiels E.M.C., Ruijter J.M., Caron H.N.et al. USAGE: a web-based approach towards the analysis of SAGE data. Bioinformatics. 16:2000;899-905.
14. 2+ ATPase and phospholamban mRNAs during heart development. Circ. Res. 76:1995;616-625.
15. Moorman A.F.M., Houweling A.C., de Boer P.A., Christoffels V.M. Sensitive non-radioactive detection of mRNA in tissue sections: novel application of the whole-mount in situ hybridization protocol. J. Histochem. Cytochem. 49:2001;1-8.
16. Endege W.O., Steinmann K.E., Boardman L.A., Thibodeau S.N., Schlegel R. Representative cDNA libraries and their utility in gene expression profiling. BioTechniques. 26:1999;542-550.
17. Peters D.G., Kassam A.B., Yonas H., O'Hare E.H., Farrel R., Brufsky A.M. Comprehensive transcript analysis in small quantities of mRNA by SAGE-LITE. Nucleic Acids Res. 27(24):1999;e39.
18. van den Hoff M.J.B., Moorman A.F., Ruijter J.M., Lamers W.H., Bennington R.W., Markwald R.R.et al. Myocardialization of the outflow tract. Dev. Biol. 212:1999;477-490.
19. van den Hoff M.J.B., Kruithof B.P., Moorman A.F., Markwald R.R., Wessels A. Formation of the myocardium after the initial development of the linear herat tube. Dev. Biol. 240:2001;61-76.
20. Tsuchida K., Aray K.Y., Kuramoto Y., Yamawaka N., Hasegawa Y., Sugino H. Identification and characterization of a novel follistatin-like protein as a binding protein for the TGF-family. J. Biol. Chem. 275:2000;40788-40796.
21. Spinale F.G., Coker M.L., Bond B.R., Zellner J.L. Myocardial matrix degradadtion and metalloproteinase activation in the failing heart: a potential therapeutic probe. Cardiovasc. Res. 46:2000;225-238.