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Volumn 1, Issue 14, 2002, Pages 1283-1292

Multiple comparisons model-based clustering and ternary pattern tree numerical display of gene response to treatment: Procedure and application to the preclinical evaluation of chemopreventive agents

Author keywords

[No Author keywords available]

Indexed keywords

ANTINEOPLASTIC AGENT; RNA;

EID: 0037704289     PISSN: 15357163     EISSN: 15388514     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (11)

References (32)
  • 1
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Wash. DC
    • Schena, M., Shalon, D., Davis, R. W., and Brown, P. O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science (Wash. DC), 270: 467-470, 1995.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 2
    • 0034659898 scopus 로고    scopus 로고
    • Genomics, gene expression and DNA arrays
    • DOI 10.1038/35015701
    • Lockhart, D. J., and Winzeler, D. A. Genomics, gene expression and DNA arrays. Nature (Lond.), 405: 827-836, 2000. (Pubitemid 30407861)
    • (2000) Nature , vol.405 , Issue.6788 , pp. 827-836
    • Lockhart, D.J.1    Winzeler, E.A.2
  • 6
    • 0034730124 scopus 로고    scopus 로고
    • Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
    • Lee, M. L., Kuo, F. C., Whitmore, G. A., and Sklar, J. Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations. Proc. Natl. Acad. Sci. USA, 97: 9834-9839, 2000.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 9834-9839
    • Lee, M.L.1    Kuo, F.C.2    Whitmore, G.A.3    Sklar, J.4
  • 10
    • 0033199170 scopus 로고    scopus 로고
    • Patterns of DNA adduct formation in liver and mammary epithelial cells of rats treated with 7,12-dimethylbenz(a)anthracene, and selective effects of chemopreventive agents
    • Izzoti, A., Camoirano, A., Cartiglia, C., Grubbs, C. J., Lubet, R. A., Kelloff, G. J., and De Flora, S. Patterns of DNA adduct formation in liver and mammary epithelial cells of rats treated with 7, 12-dimethylbenz(a)anthracene, and selective effects of chemopreventive agents. Cancer. Res., 59: 4285-4290, 1999. (Pubitemid 29418744)
    • (1999) Cancer Research , vol.59 , Issue.17 , pp. 4285-4290
    • Izzotti, A.1    Camoirano, A.2    Cartiglia, C.3    Grubbs, C.J.4    Lubet, R.A.5    Kelloff, G.J.6    De Flora, S.7
  • 11
    • 0029048701 scopus 로고
    • Rat CYP1B1: An adrenal cytochrome P450 that exhibits sex-dependent expression in livers and kidneys of TCDD-treated animals
    • Lond.
    • Walker, N. J., Gastel, J. A., Costa, L. T., Clark, G. C., Lucier, G. W., and Sutter, T. R. Rat CYP1B1: an adrenal cytochrome P450 that exhibits sex-dependent expression in livers and kidneys of TCDD-treated animals. Carcinogenesis (Lond.), 16: 1319-1327, 1995.
    • (1995) Carcinogenesis , vol.16 , pp. 1319-1327
    • Walker, N.J.1    Gastel, J.A.2    Costa, L.T.3    Clark, G.C.4    Lucier, G.W.5    Sutter, T.R.6
  • 12
    • 0029803486 scopus 로고    scopus 로고
    • Isolation of cDNAs representing dithiolethione-responsive genes
    • Primiano, T., Gastel, J. A., Kensler, T. W., and Sutter, T. R. Isolation of cDNAs representing dithiolethione-responsive genes. Carcinogenesis (Lond.), 17: 2297-2303, 1996. (Pubitemid 26402225)
    • (1996) Carcinogenesis , vol.17 , Issue.11 , pp. 2297-2303
    • Primiano, T.1    Gastel, J.A.2    Kensler, T.W.3    Sutter, T.R.4
  • 13
    • 0025934316 scopus 로고
    • Targets for Dioxin: Genes for plasminogen activator inhibitor-2 and interleukin-1β
    • Wash. DC
    • Sutter, T. R., Guzman, K., Dold, K. M, and Greenlee, W. F. Targets for Dioxin: Genes for plasminogen activator inhibitor-2 and interleukin-1β. Science (Wash. DC), 254: 415-419, 1991.
    • (1991) Science , vol.254 , pp. 415-419
    • Sutter, T.R.1    Guzman, K.2    Dold, K.M.3    Greenlee, W.F.4
  • 14
    • 0026589840 scopus 로고
    • Rapid detection of inducers of enzymes that protect against carcinogens
    • Prochaska, H. J., Santamaria, A. B., and Talalay, P. Rapid detection of inducers of enzymes that protect against carcinogens. Proc. Natl. Acad. Sci. USA, 89: 2394-2398, 1992.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 2394-2398
    • Prochaska, H.J.1    Santamaria, A.B.2    Talalay, P.3
  • 15
    • 0024781837 scopus 로고    scopus 로고
    • Mechanisms of induction of enzymes that protect against chemical carcinogens
    • Talalay, P. Mechanisms of induction of enzymes that protect against chemical carcinogens. Adv. Enzyme Regul., 28: 237-250, 1998.
    • (1998) Adv. Enzyme Regul. , vol.28 , pp. 237-250
    • Talalay, P.1
  • 16
    • 0032617027 scopus 로고    scopus 로고
    • Cellular response to cancer chemopreventive agents: Contribution of the antioxidant responsive element to the adaptive response to oxidative and chemical stress
    • Hayes, J. D., Ellis, E. M., Neal, G. E., Harrison, D. J., and Manson, M. M. Cellular response to cancer chemopreventive agents: contribution of the antioxidant response element to the adaptive response to oxidative and chemical stress. Biochem. Soc. Symp., 64: 141-168, 1999. (Pubitemid 129602115)
    • (1999) Biochemical Society Symposium , vol.64 , pp. 141-168
    • Hayes, J.D.1    Ellis, E.M.2    Neal, G.E.3    Harrison, D.J.4    Manson, M.M.5
  • 17
    • 0032827002 scopus 로고    scopus 로고
    • Regulatory mechanisms of cellular response to oxidative stress
    • DOI 10.1080/10715769900300881
    • Itoh, K., Wakabayashi, N., and Yamamoto, M. Regulatory mechanisms of cellular response to oxidative stress. Free Radic. Res., 31: 319-324, 1999. (Pubitemid 29452857)
    • (1999) Free Radical Research , vol.31 , Issue.4 , pp. 319-324
    • Itoh, K.1    Ishii, T.2    Wakabayashi, N.3    Yamamoto, M.4
  • 18
    • 0033800922 scopus 로고    scopus 로고
    • Regulation of genes encoding NAD(P)H:Quinone oxidoreductases
    • Jaiswal, A. K. Regulation of genes encoding NAD(P)H:quinone oxidoreductases. Free Radic. Biol. Med., 29: 254-262, 2000.
    • (2000) Free Radic. Biol. Med. , vol.29 , pp. 254-262
    • Jaiswal, A.K.1
  • 19
    • 0028856209 scopus 로고
    • Induction of phase I and phase II drug-metabolizing enzyme mRNA, protein, and activity by BHA, ethoxyquin, and oltipraz
    • Buetler, T. M., Gallagher, E. P., Wang, C., Stahl, D. L., Hayes, J. D., and Eaton, D. L. Induction of phase I and phase II drug-metabolizing enzyme mRNA, protein, and activity by BHA, ethoxyquin, and oltipraz. Toxicol. Appl. Pharmacol., 135: 45-57, 1995.
    • (1995) Toxicol. Appl. Pharmacol. , vol.135 , pp. 45-57
    • Buetler, T.M.1    Gallagher, E.P.2    Wang, C.3    Stahl, D.L.4    Hayes, J.D.5    Eaton, D.L.6
  • 20
    • 0023277545 scopus 로고
    • Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
    • Chomczynski, P., and Sacchi, N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem., 162: 156-169, 1987.
    • (1987) Anal. Biochem. , vol.162 , pp. 156-169
    • Chomczynski, P.1    Sacchi, N.2
  • 23
    • 0033657261 scopus 로고    scopus 로고
    • Principal components analysis to summarize microarray experiments: Application to sporulation time series
    • Raychaudhuri, S., Stuart, J. M., and Altman, R. B. Principal components analysis to summarize microarray experiments: application to sporulation time series. Pac. Symp. Biocomput., 2000: 455-466, 2000.
    • (2000) Pac. Symp. Biocomput. , vol.2000 , pp. 455-466
    • Raychaudhuri, S.1    Stuart, J.M.2    Altman, R.B.3
  • 24
    • 0039405956 scopus 로고    scopus 로고
    • Effect of reduced body weight gain on the evaluation of chemopreventive agents in the methylnitrosourea-induced mammary cancer model
    • DOI 10.1093/carcin/20.1.71
    • Rodriguez-Burford, C., Lubet, R. A., Eto, I., Juliana, M. M., Kelloff, G. J., Grubbs, C. J., and Steele, V. E. Effects of reduced body weight gain on the evaluation of chemopreventive agents in the methylnitrosourea-induced mammary cancer model. Carcinogenesis, 20: 71-76, 1999. (Pubitemid 29033847)
    • (1999) Carcinogenesis , vol.20 , Issue.1 , pp. 71-76
    • Rodriguez-Burford, C.1    Lubet, R.A.2    Eto, I.3    Juliana, M.M.4    Kelloff, G.J.5    Grubbs, C.J.6    Steele, V.E.7
  • 25
    • 0034014663 scopus 로고    scopus 로고
    • Inhibition of human cytochrome P450 enzymes by 1,2-dithiole-3-thione, oltipraz and its derivatives, and sulforaphane
    • DOI 10.1021/tx990189w
    • Langouet, S., Furge, L. L., Kerriguy, N., Nakamura, K., Guillouzo, A., and Guengerich, F. P. Inhibition of human cytochrome P450 enzymes by 1, 2-dithiole-3-thione, oltipraz and its derivatives, and sulforaphane. Chem. Res. Toxicol., 13: 245-252, 2000. (Pubitemid 30241650)
    • (2000) Chemical Research in Toxicology , vol.13 , Issue.4 , pp. 245-252
    • Langouet, S.1    Furge, L.L.2    Kerriguy, N.3    Nakamura, K.4    Guillouzo, A.5    Guengerich, F.P.6
  • 26
    • 0031426029 scopus 로고    scopus 로고
    • Effects of administration of the chemoprotective agent oltipraz on CYP1A and CYP2B in rat liver and rat hepatocytes in culture
    • DOI 10.1093/carcin/18.7.1343
    • Langouet, S., Makeo, K., Berthou, F., Morel, F., Lagadic-Gossman, D., Glaise, D., Colles, B., Ketterer, B., and Guillouzo, A. Effects of administration of the chemoprotective agent oltipraz on CYP1A and CYP2B in rat liver and rat hepatocytes in culture. Carcinogenesis (Lond.), 18: 1343-1349, 1997. (Pubitemid 28134707)
    • (1997) Carcinogenesis , vol.18 , Issue.7 , pp. 1343-1349
    • Langouet, S.1    Maheo, K.2    Berthou, F.3    Morel, F.4    Lagadic-Gossman, D.5    Glaise, D.6    Coles, B.7    Ketterer, B.8    Guillouzo, A.9
  • 27
    • 0343471515 scopus 로고    scopus 로고
    • Mutagenic activation of urinary bladder carcinogens by CYP4B1 and the presence of CYP4B1 in bladder mucosa
    • DOI 10.1016/S0006-2952(97)00216-5, PII S0006295297002165
    • Imaoka, S., Yoneda, Y., Matsuda, T., Degawa, M., Fukushima, S., and Funae, Y. Mutagenic activation of urinary bladder carcinogens by CYP4B1 and the presence of CYP4B1 in bladder mucosa. Biochem. Pharmacol., 54: 677-683, 1997. (Pubitemid 27404627)
    • (1997) Biochemical Pharmacology , vol.54 , Issue.6 , pp. 677-683
    • Imaoka, S.1    Yorieda, Y.2    Matsuda, T.3    Degawa, M.4    Fukushima, S.5    Funae, Y.6
  • 28
    • 0032773409 scopus 로고    scopus 로고
    • The complexity of radiation stress responses: Analysis by informatics and functional genomics approaches
    • Fornace, A. J., Jr., Amundson, S. A., Bittner, M., Myers, T. G., Meltzer, P., Weinsten, J. N., and Trent, J. The complexity of radiation stress responses: analysis by informatics and functional genomics approaches. Gene Expr., 7: 387-400, 1999. (Pubitemid 29372082)
    • (1999) Gene Expression , vol.7 , Issue.4-6 , pp. 387-400
    • Fornace Jr., A.J.1    Amundson, S.A.2    Bittner, M.3    Myers, T.G.4    Meltzer, P.5    Weinsten, J.N.6    Trent, J.7
  • 29
    • 0030006304 scopus 로고    scopus 로고
    • Induction of cytochrome P4501A1 by 2,3,7,8-tetrachlorodibenzo-p-dioxin or indolo(3,2-b)carbazole is associated with oxidative DNA damage
    • DOI 10.1073/pnas.93.6.2322
    • Park, J-Y., K., Shigenaga, M. K., and Ames, B. N. Induction of cytochrome P4501A1 by 2, 3, 7, 8-tetrachlorodibenzo- p-dioxin or indolo(3, 2-b)carbazole is associated with oxidative DNA damage. Proc. Natl. Acad. Sci. USA, 93: 2322-2327, 1996. (Pubitemid 26104348)
    • (1996) Proceedings of the National Academy of Sciences of the United States of America , vol.93 , Issue.6 , pp. 2322-2327
    • Park, J.-Y.K.1    Shigenaga, M.K.2    Ames, B.N.3
  • 30
    • 0037134513 scopus 로고    scopus 로고
    • Interaction of the molecular chaperone Hsp70 with human NAD(P)H:quinone oxidoreductase 1
    • DOI 10.1074/jbc.M111576200
    • Anwar, A., Siegel, D., Kepa, J. K., and Ross, D. (2002) Interaction of the molecular chaperone Hsp70 with human NAD(P)H:quinone reductase 1. J. Biol. Chem., 277: 14060-14067, 2002. (Pubitemid 34968016)
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.16 , pp. 14060-14067
    • Anwar, A.1    Siegel, D.2    Kepa, J.K.3    Ross, D.4
  • 31
    • 0034668144 scopus 로고    scopus 로고
    • The transcriptional signature of dioxin in human hepatoma HepG2 cells
    • Puga, A., Maier, A., and Medvedovic, M. The transcriptional signature of dioxin in human hepatoma HepG2 cells. Biochem. Pharmacol., 60: 1129-1142, 2000.
    • (2000) Biochem. Pharmacol. , vol.60 , pp. 1129-1142
    • Puga, A.1    Maier, A.2    Medvedovic, M.3
  • 32
    • 0034526621 scopus 로고    scopus 로고
    • Microarray expression profiling identifies genes with altered expression in HDL-deficient mice
    • DOI 10.1101/gr.10.12.2022
    • Callow, M. J., Dudoit, S., Gong, E. L., Speed, T. P., and Rubin, E. M. Microarray expression profiling identifies genes with altered expression in HDL-deficient mice. Genome Res., 10: 2022-2029, 2000. (Pubitemid 32049146)
    • (2000) Genome Research , vol.10 , Issue.12 , pp. 2022-2029
    • Callow, M.J.1    Dudoit, S.2    Gong, E.L.3    Speed, T.P.4    Rubin, E.M.5


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