Chromosome assignment of eight SOX family genes in chicken

Cytogenetic and Genome Research

Volumn 98, Issue 2-3, 2002, Pages 189-193

  Kuroiwa, A ^a   Uchikawa, M ^b   Kamachi, Y ^b   Kondoh, H ^b   Nishida Umehara, C ^a,c   Masabanda, J ^d   Griffin, D K ^d   Matsuda, Y ^a,c  

^a HOKKAIDO UNIVERSITY   (Japan)

^b OSAKA UNIVERSITY   (Japan)

^c Faculty of Science

^d BRUNEL UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ANIMAL TISSUE; CHICKEN; CHROMOSOME 1P; CHROMOSOME 1Q; CHROMOSOME 4P; CHROMOSOME 9; CHROMOSOME PAINTING; CONFERENCE PAPER; FEMALE; FLUORESCENCE IN SITU HYBRIDIZATION; GENE ASSIGNMENT; GENE CLUSTER; MICROCHROMOSOME; MULTIGENE FAMILY; NONHUMAN; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; ANIMAL; ARTICLE; CHROMOSOME; CHROMOSOME MAP; GENETICS; HUMAN;

GALLUS GALLUS;

DNA BINDING PROTEIN; HIGH MOBILITY GROUP B PROTEIN; HIGH MOBILITY GROUP PROTEIN; NUCLEAR PROTEIN; SOX-10 TRANSCRIPTION FACTOR; SOX-2 TRANSCRIPTION FACTOR; SOX-9 TRANSCRIPTION FACTOR; SOX1 PROTEIN, HUMAN; SOX14 PROTEIN, HUMAN; SOX14 PROTEIN, MOUSE; SOX21 PROTEIN, GALLUS GALLUS; SOX21 PROTEIN, HUMAN; SOX5 PROTEIN, HUMAN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR SOX10; TRANSCRIPTION FACTOR SOX2; TRANSCRIPTION FACTOR SOX3; TRANSCRIPTION FACTOR SOX9; TUMOR PROTEIN;

ANIMALS; CHICKENS; CHROMOSOME MAPPING; CHROMOSOME PAINTING; CHROMOSOMES, MAMMALIAN; DNA-BINDING PROTEINS; HIGH MOBILITY GROUP PROTEINS; HMGB PROTEINS; HUMANS; IN SITU HYBRIDIZATION, FLUORESCENCE; NEOPLASM PROTEINS; NUCLEAR PROTEINS; TRANSCRIPTION FACTORS;

EID: 0037685221     PISSN: 14248581     EISSN: None     Source Type: Journal    
DOI: 10.1159/000069803     Document Type: Conference Paper

References (23)

1. Bloom SE, Delaney ME, Muscarella DE: Constant and variable features of avian chromosomes, in Etches RJ, Gibbins AMV (eds): Manipulation of the Avian Genome, pp 39-60 (CRC Press, Boca Raton 1993).
2. Bowles J, Schepers G, Koopman P: Phylogeny of the SOX family of transcription factors based on sequence and structural indicators. Dev Biol 227:239-255 (2000).
3. Burt DW: Origin and evolution of avian microchromosomes. Cytogenet Genome Res 96:97-112 (2002).
4. Burt DW, Bumstead JJ, Bitgood FA, Leon P, Crittenden LB: Chicken genome mapping: A new era in avian genetics. Trends Genet 11:190-194 (1995).
5. Clark MS, Edwards YJK, McQueen HA, Meek SE, Smith S, Umrania Y, Warner S, Williams G, Elgar G: Sequence scanning chicken cosmids: A methodology for genome screening. Gene 227:223-230 (1999).
6. Griffin DK, Haberman F, Masabanda J, O'Brien P, Bagga M, Sazanov A, Smith J, Burt DW, Ferguson-Smith M, Wienberg J: Micro- and macrochromosome paints generated by flow cytometry and microdissection: tools for mapping the chicken genome. Cytogenet Cell Genet 87:278-281 (1999).
7. Groenen MAM, Cheng HH, Bumstead N, Benkel BF, Briles WE, Burke T, Burt DW, Crittenden LB, Dodgson J, Hillel J, Lamont S, Ponce de Leon A, Soller M, Takahashi H, Vignal A: A consensus linkage map of the chicken genome. Genome Res 10:137-147 (2000).
8. Hughes AL, Hughes MK: Small genomes for better flyers. Nature 377:391 (1995).
9. Kamachi Y, Uchikawa M, Kondoh H: Pairing SOX off with partners in the regulation of embryonic development. Trends Genet. 16:182-187 (2000).
10. Kamachi Y, Uchikawa M, Collignon J, Lovell-Badge R, Kondoh H: Involvement of Sox1, 2 and 3 in the early and subsequent molecular events of lens induction. Development 125:2521-2532 (1998).
11. Kamachi Y, Sockanathan S, Liu Q, Breitman M, Lovell-Badge R, Kondoh H: Involvement of Sox proteins in lens-specific activation of crystallin genes. EMBO J 14:3510-3519 (1995).
12. McQueen HA, Siriaco G, Bird AP: Chicken microchromosomes are hyperacetylated, early replicating, and gene rich. Genome Res 8:621-630 (1998).
13. Matsuda Y, Chapman VM: Application of fluorescence in situ hybridization in genome analysis of the mouse. Electrophoresis 16:261-272 (1995).
14. Nanda I, Shan Z, Schartl M, Burt DW, Koehler M, Nothwang H-G, Grutzner F, Paton IR, Windsor D, Dunn I, Engel W, Staeheli P, Mizuno S, Haaf T, Schmid M: 300 million years of conserved synteny between chicken Z and human chromosome 9. Nature Genet 21:258-259 (1999).
15. Pevny LH, Lovell-Badge R: Sox genes find their feet. Curr Opin Genet Dev 7:338-344 (1997).
16. Schepers GE, Teasdale RD, Koopman P: Twenty pairs of sox: extent, homology, and nomenclature of the mouse and human sox transcription factor gene families. Dev Cell 3:167-170 (2002).
17. Schmid M, Nanda I, Guttenbach M, Steinlein C, Hoehn H, Schartl M, Haaf T, Weigend S, Fries R, Buerstedde J-M, Wimmers K, Burt DW, Smith J, A'Hara S, Law A, Griffin DK, Bumstead N, Kaufman J, Thomson PA, Burke T, Groenen MAM, Crooijmans RPMA, Vignal A, Fillon V, Morrisson M, Pitel F, Tixier-Boichard M, Ladjali-Mohammedi K, Hillel J, Maki-Tanila A, Cheng HH, Delany ME, Burnside J, Mizuno S: First report on chicken genes and chromosomes 2000. Cytogenet Cell Genet 90:169-248 (2000).
18. Smith J, Bruley CK, Paton IR, Dunn I, Jones CT, Windsor D, Morrice DR, Law AS, Masabanda J, Sazanov A, Waddington D, Fries R, Burt DW: Differences in gene density on chicken macrochromosomes and microchromosomes. Anim Genet 31:96-103 (2000).
19. Suzuki T, Kurosaki T, Agata K, Koide M, Shimada K, Kansaku N, Namikawa T, Matsuda Y: Cytogenetic assignment of 29 functional genes to chicken microchromosomes by FISH. Cytogenet Cell Genet 87:233-237 (1999a).
20. Suzuki T, Kurosaki T, Shimada K, Kansaku N, Kuhnlein U, Zadworny D, Agata K, Hashimoto A, Koide M, Koike M, Takata M, Kuroiwa A, Minai S, Namikawa T, Matsuda Y: Cytogenetic mapping of 31 functional genes on chicken chromosomes by direct R-banding FISH. Cytogenet Cell Genet 87:32-40 (1999b).
21. Tiersch TR, Wachtel SS: On the evolution of genome size in birds. J Hered 82:363-368 (1991).
22. Uchikawa M, Kamachi Y, Kondoh H: Two distinct subgroups of group B Sox genes for transcriptional activators and repressors: their expression during embryonic organogenesis of the chicken. Mech Dev 84:103-120 (1999).
23. Wegner M: From head to toes: the multiple facets of Sox proteins. Nucl Acids Res 27:1409-1420 (1999).