Insights into the mobility of methyl-bearing side chains in proteins from 3JCC and 3JCN couplings

Journal of the American Chemical Society

Volumn 125, Issue 29, 2003, Pages 8959-8966

  Chou, James J ^a,c   Case, David A ^b   Bax, Ad ^a  

^a NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES   (United States)

^b SCRIPPS RESEARCH INSTITUTE   (United States)

^c HARVARD MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL BONDS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PHASE SHIFT; PROBABILITY DENSITY FUNCTION; RELAXATION PROCESSES;

SIDE-CHAIN DYNAMICS;

PROTEINS;

CARBON; CARBON 13; HYDROGEN; IMMUNOGLOBULIN G; METHYL GROUP; PROTEIN G; PROTEINASE; UBIQUITIN;

ARTICLE; CALCULATION; CHEMICAL BINDING; CHEMICAL INTERACTION; DERIVATIZATION; MEASUREMENT; MOLECULAR DYNAMICS; MOLECULAR RECOGNITION; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROTEIN FUNCTION; PROTEIN STRUCTURE; THERMODYNAMICS;

HIV PROTEASE; NERVE TISSUE PROTEINS; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN CONFORMATION; PROTEINS; THERMODYNAMICS; UBIQUITIN;

EID: 0037622537     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja029972s     Document Type: Article

References (53)

1. Kay, L. E.; Torchia, D. A.; Bax, A. Biochemistry 1989, 28, 8972-8979.
2. Wagner, G. Curr. Opin. Struct. Biol. 1993, 3, 748-754.
3. Wand, A. J.; Urbauer, J. L.; McEvoy, R. P.; Bieber, R. J. Biochemistry 1996, 35, 6116-6125.
4. Foster, M. P.; Wuttke, D. S.; Radhakrishnan, I.; Case, D. A.; Gottesfeld, J. M.; Wright, P. E. Nat. Struct. Biol. 1997, 4, 605-608.
5. Yang, D. W.; Mittermaier, A.; Mok. Y. K.; Kay. L. E. J. Mol. Biol. 1998, 276, 939-954.
6. Palmer, A. G. Annu. Rev Biophys. Biomol. Struct. 2001, 30. 129-155.
7. Yang, D. W.; Mok, Y. K.; FormanKay, J. D.; Farrow, N. A.; Kay, L. E. J. Mol. Biol. 1997, 272, 790-804.
8. Gagne, S. M.; Tsuda, S.; Spyracopoulos, L.; Kay, L. E.; Sykes, B. D. J. Mol. Biol. 1998, 278, 667-686.
9. Lee, A. L.; Kinnear, S. A.; Wand, A. J. Nat. Struct. Biol. 2000, 7, 72-77.
10. Lee, A. L.; Wand, A. J. Nature 2001, 411. 501-504.
11. Nicholsom, L. K.; Kay, L. E.; Baldisseri, D. M.; Arango, J.; Young, P. E.; Bax, A.; Torchia, D. A. Biochemistry 1992, 31, 5253-5263.
12. Ishima, R.; Petkova, A. P.; Louis, J. M.; Torchia, D. A. J. Am. Chem. Soc. 2001, 123, 6164-6171.
13. Lipari, G.; Szabo, A. J. Am. Chem. Soc. 1982, 104, 4546-4559.
14. Li, Z. G.; Raychaudhuri, S.; Wand, A. J. Protein Sci. 1996. 5, 2647-2650.
15. Bracken, C.; Carr, P. A.; Cavanagh, J.; Palmer, A. G. J. Mol. Biol. 1999, 285, 2133-2146.
16. Dzakula, Z.; Westler, W. M.; Edison, A. S.; Markley, J. L. J. Am. Chem. Soc. 1992, 114, 6195-6199.
17. Dzakula, Z.; Edison, A. S.; Westler, W. M.; Markley, J. L. J. Am. Chem. Soc. 1992. 114, 6200-6207.
18. Perez, C.; Lohr, F.; Ruterjans, H.; Schmidt, J. M. J. Am. Chem. Soc. 2001, 123, 7081-7093.
19. Feeney, J. Proc. R. Soc. London. Ser. A 1975, 345, 61-69.
20. Wyssbrod, H. R.; Ballardin, A.; Schwartz, I. L.; Walter, R.; van Binst, G.; Gibbons, W. A.; Agosta, W. C.; Field, F. H.; Cowburn, D. J. Am. Chem. Soc. 1977, 99, 5273-5276,
21. Fischman, A. J.; Live, D. H.; Wyssbrod, H. R.; Agosta, W. C.; Cowburn, D. J. Am. Chem. Soc, 1980, 102, 2533-2539.
22. Vuister, G. W.; Wang, A. C.; Bax, A. J. Am. Chem. Soc. 1993, 115, 5334-5335.
23. Grzesiek, S.; Vuister, G. W.; Bax, A. J. Biomol. NMR 1993. 3, 487-493.
24. Schmidt, J. M.; Blumel, M.; Lohr, F.; Ruterjans, H. J. Biomol. NMR 1999, 14, 1-12.
25. Chou, J. J.; Bax, A. J. Am. Chem. Soc. 2001, 123, 3844-3845.
26. Mittermaier, A.; Kay, L. E. J. Am. Chem. Soc. 2001, 123, 6892-6903.
27. Lam, P. Y. S.; Jadhav, P. K.; Eyermann, C. J.; Hodge, C. N.; Ru, Y.; Bacheler, L. T.; Meek, J. L.; Otto, M. J.; Rayner, M. M.; Wong, Y. N.; Chang, C. H.; Weber, P. C.; Jackson, D. A.; Sharpe, T. R.; Ericksonviitanen, S. Science 1994, 263, 380-384.
28. Yamazaki, T.; Nicholson, L. K.; Torchia, D. A.; Stahl, S. J.; Kaufman, J. D.; Wingfield, P. T.; Domaille, P. J.; Campbellburk, S. Eur. J. Biochem. 1994, 219, 707-712.
29. Ruckert, M.; Otting, G. J. Am. Chem. Soc. 2000, 122, 7793-7797.
30. Hansen, M. R.; Mueller, L.; Pardi, A. Nat. Struct. Biol. 1998, 5, 1065-1074.
31. Delaglio, F.; Grzesiek, S.; Vuister, G. W.; Zhu, G.; Pfeifer, J.; Bax, A. J. Biomol. NMR 1995, 6, 277-293.
32. Wang, A. C.; Grzesiek, S.; Tschudin, R.; Lodi, P. J.; Bax, A. J. Biomol. NMR 1995, 5, 376-382.
33. Grzesiek, S.; Bax, A. J. Am. Chem. Soc. 1992, 114, 6291-6293.
34. Ottiger, M.; Delaglio, F.; Marquardt, J. L.; Tjandra, N.; Bax, A. J. Magn. Reson. 1998, 134, 365-369.
35. Losonczi, J. A.; Andrec, M.; Fischer, M. W. F.; Prestegard, J. H. J. Magn. Reson. 1999, 138, 334-342.
36. Sass, J.; Cordier, F.; Hoffmann, A.; Cousin, A.; Omichinski, J. G.; Lowen, H.; Grzesiek, S. J. Am. Chem. Soc. 1999, 121, 2047-2055.
37. Zweckstetter, M.; Bax, A. J. Am. Chem. Soc. 2000, 122, 3791-3792.
38. Brunger, A. T. XPLOR: A System for X-ray Crystallography and NMR, 3.1 ed.; Yale University Press: New Haven, 1993.
39. Malkina, O. L.; Salahub, D. R.; Malkin, V. G. J. Chem. Phys. 1996, 105, 8793-8800.
40. Malkin, V. G.; Malkina, O. L.; Salahub, D. R. Chem. Phys. Lett. 1994, 221, 91-99.
41. Malkin, V. G.; Malkino, O. L.; Eriksson, L. A.; Salahub, D. R. In Modern density functional theory: A tool for chemistry; Seminario, J. M., Politzer, P., Eds.; Elsevier: Leiden. 1995: pp 273-347.
42. Kutzelnigg, W.; Fleischer, U.; Schindler, M. In NMR, Basic Principles and Progress; Diehl, P., Fluck, E., Gnther, H., Kosfeld, R., Seelig, J., Eds.; Springer: Berlin, 1990; Vol. 23, pp 167-262.
43. Perdew, J. P. Phys. Rev. B 1986, 33, 8822-8824.
44. Perdew, J. P.; Wang, Y. Phys. Rev. B 1992, 45, 13244-13249.
45. Derrick, J. P.; Wigley, D. B. J. Mol. Biol. 1994, 243, 906-918.
46. Cornilescu, G.; Marquardt, J. L.; Ottiger, M.; Bax, A. J. Am. Chem. Soc. 1998, 120, 6836-6837.
47. Ramirez, B. E.; Bax, A. J. Am. Chem. Soc. 1998, 120, 9106-9107.
48. Al-Hashimi, H. M.; Valafar, H.; Terrell, M.; Zartler, E. R.; M. K.; Prestegard, J. H. J. Magn. Reson. 2000, 143, 402-406.
49. Ottiger, M.; Bax, A. J. Am. Chem. Soc. 1998, 120, 12334-12341.
50. Ottiger, M.; Bax, A. J. Am. Chem. Soc. 1999, 121, 4690-4695.
51. Lee, A. L.; Flynn, P. F.; Wand, A. J. J. Am. Chem. Soc. 1999, 121, 2891-2902
52. Prabhu, N. V.; Lee, A. L.; Wand, A. J.; Sharp, K. A. Biochemistry 2003, 42, 562-570.
53. Vijay-Kumar, S.; Bugg, C. E.; Cook, W. J. J. Mol. Biol. 1987, 194, 531-544.