-
1
-
-
0004228157
-
-
ASM Press, Washington, DC
-
Friedberg, E. C., Walker, G. C. and Siede, W. (1995) DNA Repair and Mutagenesis, ASM Press, Washington, DC
-
(1995)
DNA Repair and Mutagenesis
-
-
Friedberg, E.C.1
Walker, G.C.2
Siede, W.3
-
3
-
-
0033953141
-
DNA repair: Models for damage and mismatch recognition
-
Rajski, S. R., Jackson, B. A. and Barton, J. K. (2000) DNA repair: models for damage and mismatch recognition. Mutation Res. 447, 49-72
-
(2000)
Mutation Res.
, vol.447
, pp. 49-72
-
-
Rajski, S.R.1
Jackson, B.A.2
Barton, J.K.3
-
4
-
-
0021191345
-
Dynamics of DNA duplexes containing internal GT, GA, AC, and TC pairs - Hydrogen-exchange at and adjacent to mismatch sites
-
Patel, D. J., Kozlowski, S. A., Ikuta, S. and Itakura, K. (1984) Dynamics of DNA duplexes containing internal GT, GA, AC, and TC pairs - hydrogen-exchange at and adjacent to mismatch sites. Federation Proc. 43, 2663-2670
-
(1984)
Federation Proc.
, vol.43
, pp. 2663-2670
-
-
Patel, D.J.1
Kozlowski, S.A.2
Ikuta, S.3
Itakura, K.4
-
5
-
-
0022423486
-
3G (X, Y=A,C,G,T)
-
3G (X, Y=A,C,G,T). Nucleic Acids Res. 13, 4811-4824
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 4811-4824
-
-
Aboulela, F.1
Koh, D.2
Tinoco, I.3
Martin, F.H.4
-
6
-
-
0023008661
-
Structural features and hydration of d(C-G-C-G-A-A-T-T-A-G-C-G) - A double helix containing two GA mispairs
-
Hunter, W. N., Brown, T. and Kennard, O. (1986) Structural features and hydration of d(C-G-C-G-A-A-T-T-A-G-C-G) - a double helix containing two GA mispairs. J. Biomol. Struct. Dyn. 4, 173-191
-
(1986)
J. Biomol. Struct. Dyn.
, vol.4
, pp. 173-191
-
-
Hunter, W.N.1
Brown, T.2
Kennard, O.3
-
7
-
-
0002689224
-
Oligonucleotide structure by X-ray crystallography and NMR spectroscopy
-
Brown, T. (1995) Oligonucleotide structure by X-ray crystallography and NMR spectroscopy. Aldrichimica Acta 28, 15-20
-
(1995)
Aldrichimica Acta
, vol.28
, pp. 15-20
-
-
Brown, T.1
-
8
-
-
0032212134
-
NMR solution structure of a DNA dodecamer containing single G.T mismatches
-
Allawi, H. T. and SantaLucia, Jr, J. (1998) NMR solution structure of a DNA dodecamer containing single G.T mismatches. Nucleic Acids Res. 26, 4925-4934
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 4925-4934
-
-
Allawi, H.T.1
SantaLucia J., Jr.2
-
9
-
-
0030875847
-
Thermodynamics and NMR of internal GT mismatches in DNA
-
Allawi, H. T. and SantaLucia, Jr, J. (1997) Thermodynamics and NMR of internal GT mismatches in DNA. Biochemistry 36, 10581-10594
-
(1997)
Biochemistry
, vol.36
, pp. 10581-10594
-
-
Allawi, H.T.1
SantaLucia J., Jr.2
-
10
-
-
0022429756
-
G.T base-pairs in a DNA helix - The crystal-structure of d(G-G-G-G-T-C-C-C)
-
Kneale, G., Brown, T., Kennard, O. and Rabinovich, D. (1985) G.T base-pairs in a DNA helix - the crystal-structure of d(G-G-G-G-T-C-C-C). J. Mol. Biol. 186, 805-814
-
(1985)
J. Mol. Biol.
, vol.186
, pp. 805-814
-
-
Kneale, G.1
Brown, T.2
Kennard, O.3
Rabinovich, D.4
-
11
-
-
0023664744
-
The structure of guanosine-thymidine mismatches in B-DNA at 2.5 Å resolution
-
Hunter, W. N., Brown, T., Kneale, G., Anand, N. N., Rabinovich, D. and Kennard, O. (1987) The structure of guanosine-thymidine mismatches in B-DNA at 2.5 Å resolution. J. Biol. Chem. 262, 9962-9970
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 9962-9970
-
-
Hunter, W.N.1
Brown, T.2
Kneale, G.3
Anand, N.N.4
Rabinovich, D.5
Kennard, O.6
-
12
-
-
0024477489
-
Raman spectral studies of nucleic-acids. 34. Effect of the G.T mismatch on backbone and sugar conformations of Z-DNA and B-DNA - Analysis by Raman-spectroscopy of crystal and solution structures of d(CGCGTG) and d(CGCGCG)
-
Benevides, J. M., Wang, A. H.-J., Van der Marel, G. A., Van Boom, J. H. and Thomas, G. J. J. (1989) Raman spectral studies of nucleic-acids. 34. Effect of the G.T mismatch on backbone and sugar conformations of Z-DNA and B-DNA - analysis by Raman-spectroscopy of crystal and solution structures of d(CGCGTG) and d(CGCGCG). Biochemistry 28, 304-310
-
(1989)
Biochemistry
, vol.28
, pp. 304-310
-
-
Benevides, J.M.1
Wang, A.H.-J.2
Van Der Marel, G.A.3
Van Boom, J.H.4
Thomas, G.J.J.5
-
13
-
-
0025193776
-
O-6-methylguanine and A.C and G.T mismatches cause asymmetric structural defects in DNA that are affected by DNA sequence
-
Voigt, J. M. and Topal, M. D. (1990) O-6-methylguanine and A.C and G.T mismatches cause asymmetric structural defects in DNA that are affected by DNA sequence. Biochemistry 29, 5012-5018
-
(1990)
Biochemistry
, vol.29
, pp. 5012-5018
-
-
Voigt, J.M.1
Topal, M.D.2
-
14
-
-
0032581024
-
Nearest-neighbor thermodynamics of internal A.C mismatches in DNA: Sequence dependence and pH effects
-
Allawi, H. T. and SantaLucia, Jr, J. (1998) Nearest-neighbor thermodynamics of internal A.C mismatches in DNA: sequence dependence and pH effects. Biochemistry 37, 9435-9444
-
(1998)
Biochemistry
, vol.37
, pp. 9435-9444
-
-
Allawi, H.T.1
SantaLucia J., Jr.2
-
16
-
-
0020524098
-
Detection of a guanine.adenine base-pair in a decadeoxyribonucleotide by proton magnetic-resonancespectroscopy
-
Kan, L. S., Chandrasegaran, S., Pulford, S. M. and Miller, P. S. (1983) Detection of a guanine.adenine base-pair in a decadeoxyribonucleotide by proton magnetic-resonancespectroscopy. Proc. Natl. Acad. Sci. U.S.A. 80, 4263-4265
-
(1983)
Proc. Natl. Acad. Sci. U.S.A.
, vol.80
, pp. 4263-4265
-
-
Kan, L.S.1
Chandrasegaran, S.2
Pulford, S.M.3
Miller, P.S.4
-
17
-
-
0011178497
-
Molecular-structure of the G-A base-pair in DNA and its implications for the mechanism of transversion mutations
-
Brown, T., Hunter, W. N., Kneale, G. and Kennard, O. (1986) Molecular-structure of the G-A base-pair in DNA and its implications for the mechanism of transversion mutations. Proc. Natl. Acad. Sci. U.S.A. 83, 2402-2406
-
(1986)
Proc. Natl. Acad. Sci. U.S.A.
, vol.83
, pp. 2402-2406
-
-
Brown, T.1
Hunter, W.N.2
Kneale, G.3
Kennard, O.4
-
18
-
-
0023628497
-
Helix geometry, hydration, and G.A mismatch in a B-DNA decamer
-
Prive, G. G., Heinemann, U., Chandrasegaran, S., Kan, L. S., Kopka, M. L. and Dickerson, R. E. (1987) Helix geometry, hydration, and G.A mismatch in a B-DNA decamer. Science 238, 498-504
-
(1987)
Science
, vol.238
, pp. 498-504
-
-
Prive, G.G.1
Heinemann, U.2
Chandrasegaran, S.3
Kan, L.S.4
Kopka, M.L.5
Dickerson, R.E.6
-
20
-
-
0025114437
-
Crystal-structure and sequence-dependent conformation of the A.G mispaired oligonucleotide d(CGCAAGCTGGCG)
-
Webster, G. D., Sanderson, M. R., Skelly, J. V., Neidle, S., Swann, P. F., Li, B. F. and Tickle, I. J. (1990) Crystal-structure and sequence-dependent conformation of the A.G mispaired oligonucleotide d(CGCAAGCTGGCG). Proc. Natl. Acad. Sci. U.S.A. 87, 6693-6697
-
(1990)
Proc. Natl. Acad. Sci. U.S.A.
, vol.87
, pp. 6693-6697
-
-
Webster, G.D.1
Sanderson, M.R.2
Skelly, J.V.3
Neidle, S.4
Swann, P.F.5
Li, B.F.6
Tickle, I.J.7
-
21
-
-
0025767192
-
Solution structure of an oncogenic DNA duplex containing a G.A mismatch
-
Carbonnaux, C., Van der Marel, G. A., Van Boom, J. H., Guschlbauer, W. and Fazakerley, G. V. (1991) Solution structure of an oncogenic DNA duplex containing a G.A mismatch. Biochemistry 30, 5449-5458
-
(1991)
Biochemistry
, vol.30
, pp. 5449-5458
-
-
Carbonnaux, C.1
Van Der Marel, G.A.2
Van Boom, J.H.3
Guschlbauer, W.4
Fazakerley, G.V.5
-
22
-
-
0025018374
-
Structural and thermodynamic studies on the adenine guanine mismatch in B-DNA
-
Leonard, G. A., Booth, E. D. and Brown, T. (1990) Structural and thermodynamic studies on the adenine guanine mismatch in B-DNA. Nucleic Acids Res. 18, 5617-5623
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 5617-5623
-
-
Leonard, G.A.1
Booth, E.D.2
Brown, T.3
-
23
-
-
0029071401
-
Conformational flexibility in DNA duplexes containing single G.G mismatches
-
Lane, A. and Peck, B. (1995) Conformational flexibility in DNA duplexes containing single G.G mismatches. Eur. J. Biochem. 230, 1073-1087
-
(1995)
Eur. J. Biochem.
, vol.230
, pp. 1073-1087
-
-
Lane, A.1
Peck, B.2
-
24
-
-
0027442905
-
Influence of nearest-neighbor sequence on the stability of base-pair mismatches in long DNA - Determination by temperature-gradient gel-electrophoresis
-
Ke, S. H. and Wartell, R. M. (1993) Influence of nearest-neighbor sequence on the stability of base-pair mismatches in long DNA - determination by temperature-gradient gel-electrophoresis. Nucleic Acids Res. 21, 5137-5143
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 5137-5143
-
-
Ke, S.H.1
Wartell, R.M.2
-
25
-
-
0031423669
-
Non-Watson-Crick base associations in DNA and RNA revealed by single crystal X-ray diffraction methods: Mismatches, modified bases, and nonduplex DNA
-
Brown, T. and Hunter, W. N. (1997) Non-Watson-Crick base associations in DNA and RNA revealed by single crystal X-ray diffraction methods: mismatches, modified bases, and nonduplex DNA. Biopolymers 44, 91-103
-
(1997)
Biopolymers
, vol.44
, pp. 91-103
-
-
Brown, T.1
Hunter, W.N.2
-
27
-
-
0033596964
-
Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches
-
Peyret, N., Seneviratne, P. A., Allawi, H. T. and SantaLucia, Jr, J. (1999) Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches. Biochemistry 38, 3468-3477
-
(1999)
Biochemistry
, vol.38
, pp. 3468-3477
-
-
Peyret, N.1
Seneviratne, P.A.2
Allawi, H.T.3
SantaLucia J., Jr.4
-
28
-
-
0032102940
-
Thermodynamics of internal C.T mismatches in DNA
-
Allawi, H. T. and SantaLucia, Jr, J. (1998) Thermodynamics of internal C.T mismatches in DNA. Nucleic Acids Res. 26, 2694-2701
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 2694-2701
-
-
Allawi, H.T.1
SantaLucia J., Jr.2
-
29
-
-
0026053768
-
NMR and molecular modeling evidence for a G.A mismatch base-pair in a purine-rich DNA duplex
-
Li, Y., Zon, G. and Wilson, W. D. (1991) NMR and molecular modeling evidence for a G.A mismatch base-pair in a purine-rich DNA duplex. Proc. Natl. Acad. Sci. U.S.A. 88, 26-30
-
(1991)
Proc. Natl. Acad. Sci. U.S.A.
, vol.88
, pp. 26-30
-
-
Li, Y.1
Zon, G.2
Wilson, W.D.3
-
30
-
-
0025786033
-
Thermodynamics of DNA duplexes with adjacent G.A mismatches
-
Li, Y., Zon, G. and Wilson, W. D. (1991) Thermodynamics of DNA duplexes with adjacent G.A mismatches. Biochemistry 30, 7566-7572
-
(1991)
Biochemistry
, vol.30
, pp. 7566-7572
-
-
Li, Y.1
Zon, G.2
Wilson, W.D.3
-
32
-
-
0027053974
-
Base-pairing geometry in GA mismatches depends entirely on the neighboring sequence
-
Cheng, J.-W., Chou, S.-H. and Reid, B. R. (1992) Base-pairing geometry in GA mismatches depends entirely on the neighboring sequence. J. Mol. Biol. 228, 1037-1041
-
(1992)
J. Mol. Biol.
, vol.228
, pp. 1037-1041
-
-
Cheng, J.-W.1
Chou, S.-H.2
Reid, B.R.3
-
33
-
-
0026498013
-
2 - Adjacent G-A mismatches stabilized by cross-strand base-stacking and B(II) phosphate groups
-
2 - adjacent G-A mismatches stabilized by cross-strand base-stacking and B(II) phosphate groups. J. Mol. Biol. 228, 138-155
-
(1992)
J. Mol. Biol.
, vol.228
, pp. 138-155
-
-
Chou, S.-H.1
Cheng, J.-W.2
Reid, B.R.3
-
34
-
-
0026621730
-
Very stable mismatch duplexes - Structural and thermodynamic studies on tandem G.A mismatches in DNA
-
Ebel, S., Lane, A. and Brown, T. (1992) Very stable mismatch duplexes - structural and thermodynamic studies on tandem G.A mismatches in DNA. Biochemistry 31, 12083-12086
-
(1992)
Biochemistry
, vol.31
, pp. 12083-12086
-
-
Ebel, S.1
Lane, A.2
Brown, T.3
-
35
-
-
0029116756
-
Oligonucleotides containing G.A pairs - Effect of flanking sequences on structure and stability
-
Li, Y. and Agrawal, S. (1995) Oligonucleotides containing G.A pairs - effect of flanking sequences on structure and stability. Biochemistry 34, 10056-10062
-
(1995)
Biochemistry
, vol.34
, pp. 10056-10062
-
-
Li, Y.1
Agrawal, S.2
-
36
-
-
0029912389
-
The thermal stability of DNA fragments with tandem mismatches at a d(CXYG).d(CY′X′G) site
-
Ke, S.-H. and Wartell, R. M. (1996) The thermal stability of DNA fragments with tandem mismatches at a d(CXYG).d(CY′X′G) site. Nucleic Acids Res. 24, 707-712
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 707-712
-
-
Ke, S.-H.1
Wartell, R.M.2
-
38
-
-
0033030742
-
Structural studies of symmetric DNA undecamers containing non-symmetrical sheared (PuGAPu):(PyGAPy) motifs
-
Chou, S. H., Tseng, Y. Y., Chen, Y. R. and Cheng, J. W. (1999) Structural studies of symmetric DNA undecamers containing non-symmetrical sheared (PuGAPu):(PyGAPy) motifs. J. Biomol. NMR 14, 157-167
-
(1999)
J. Biomol. NMR
, vol.14
, pp. 157-167
-
-
Chou, S.H.1
Tseng, Y.Y.2
Chen, Y.R.3
Cheng, J.W.4
-
39
-
-
0028354874
-
Properties of multiple G.A mismatches in stable oligonucleotide duplexes
-
Lane, A., Ebel, S. and Brown, T. (1994) Properties of multiple G.A mismatches in stable oligonucleotide duplexes. Eur. J. Biochem. 220, 717-727
-
(1994)
Eur. J. Biochem.
, vol.220
, pp. 717-727
-
-
Lane, A.1
Ebel, S.2
Brown, T.3
-
40
-
-
0021724702
-
Structural specificities of five commonly used DNA nucleases
-
Drew, H. R. (1984) Structural specificities of five commonly used DNA nucleases. J. Mol. Biol. 178, 535-557
-
(1984)
J. Mol. Biol.
, vol.178
, pp. 535-557
-
-
Drew, H.R.1
-
41
-
-
0021140818
-
DNA structural variations in the Escherichia coli TyrT-promoter
-
Drew, H. R. and Travers, A. A. (1984) DNA structural variations in the Escherichia coli TyrT-promoter. Cell (Cambridge, Mass.) 37, 491-502
-
(1984)
Cell (Cambridge, Mass.)
, vol.37
, pp. 491-502
-
-
Drew, H.R.1
Travers, A.A.2
-
42
-
-
0028220190
-
Characterization of preferred deoxyribonuclease-I cleavage sites
-
Herrera, J. E. and Chaires, J. B. (1994) Characterization of preferred deoxyribonuclease-I cleavage sites. J. Mol. Biol. 236, 405-411
-
(1994)
J. Mol. Biol.
, vol.236
, pp. 405-411
-
-
Herrera, J.E.1
Chaires, J.B.2
-
43
-
-
0023818825
-
Structure refined to 2 Å of a nicked DNA octanucleotide complex with DNase I
-
Suck, D., Lahm, A. and Oefner, C. (1988) Structure refined to 2 Å of a nicked DNA octanucleotide complex with DNase I. Nature (London) 332, 464-468
-
(1988)
Nature (London)
, vol.332
, pp. 464-468
-
-
Suck, D.1
Lahm, A.2
Oefner, C.3
-
44
-
-
0022476864
-
Structure of DNase-I at 2.0 Å resolution suggests a mechanism for binding to and cutting DNA
-
Suck, D. and Oefner, C. (1986) Structure of DNase-I at 2.0 Å resolution suggests a mechanism for binding to and cutting DNA. Nature (London) 321, 620-625
-
(1986)
Nature (London)
, vol.321
, pp. 620-625
-
-
Suck, D.1
Oefner, C.2
-
45
-
-
0022449085
-
Micrococcal nuclease as a DNA structural probe - Its recognition sequences, their genomic distribution and correlation with DNA structure determinants
-
Flick, J. T., Eissenberg, J. C. and Elgin, S. C. R. (1986) Micrococcal nuclease as a DNA structural probe - its recognition sequences, their genomic distribution and correlation with DNA structure determinants. J. Mol. Biol. 190, 619-633
-
(1986)
J. Mol. Biol.
, vol.190
, pp. 619-633
-
-
Flick, J.T.1
Eissenberg, J.C.2
Elgin, S.C.R.3
-
46
-
-
0023189809
-
The use of micrococcal nuclease as a probe for drug-binding sites on DNA
-
Fox, K. R. and Waring, M. J. (1987) The use of micrococcal nuclease as a probe for drug-binding sites on DNA. Biochim. Biophys. Acta 909, 145-155
-
(1987)
Biochim. Biophys. Acta
, vol.909
, pp. 145-155
-
-
Fox, K.R.1
Waring, M.J.2
-
47
-
-
0000261801
-
Staphylococcal nuclease: Proposed mechanism of action based on structure of enzyme-thymidine 3′,5′-bisphosphate-calcium ion complex at 1.5 Å
-
Cotton, F. A., Hazen, E. E. and Legg, M. J. (1979) Staphylococcal nuclease: proposed mechanism of action based on structure of enzyme-thymidine 3′,5′-bisphosphate-calcium ion complex at 1.5 Å. Proc. Natl. Acad. Sci. U.S.A. 76, 2551-2555
-
(1979)
Proc. Natl. Acad. Sci. U.S.A.
, vol.76
, pp. 2551-2555
-
-
Cotton, F.A.1
Hazen, E.E.2
Legg, M.J.3
-
49
-
-
0028936782
-
X-ray crystal-structures of staphylococcal nuclease complexed with the competitive inhibitor cobalt(II) and nucleotide
-
Loll, P. J., Quirk, S., Lattman, E. E. and Garavito, R. M. (1995) X-ray crystal-structures of staphylococcal nuclease complexed with the competitive inhibitor cobalt(II) and nucleotide. Biochemistry 34, 4316-4324
-
(1995)
Biochemistry
, vol.34
, pp. 4316-4324
-
-
Loll, P.J.1
Quirk, S.2
Lattman, E.E.3
Garavito, R.M.4
-
50
-
-
0031216589
-
2+ and thymidine-3′,5′-bisphosphate
-
2+ and thymidine-3′,5′-bisphosphate. J. Biomol. NMR 10, 143-164
-
(1997)
J. Biomol. NMR
, vol.10
, pp. 143-164
-
-
Wang, J.1
Truckses, D.M.2
Abildgaard, F.3
Dzakula, Z.4
Zolnai, Z.5
Markley, J.L.6
-
51
-
-
0001904087
-
Chemical snapshots of DNA - Using the hydroxyl radical to study the structure of DNA and DNA-protein complexes
-
Tullius, T. D. (1987) Chemical snapshots of DNA - using the hydroxyl radical to study the structure of DNA and DNA-protein complexes. Trends Biochem. Sci. 12, 297-300
-
(1987)
Trends Biochem. Sci.
, vol.12
, pp. 297-300
-
-
Tullius, T.D.1
-
52
-
-
0024411573
-
Use of the hydroxyl radical and gel-electrophoresis to study DNA structure
-
Shafer, G. E., Price, M. A. and Tullius, T. D. (1989) Use of the hydroxyl radical and gel-electrophoresis to study DNA structure. Electrophoresis 10, 397-404
-
(1989)
Electrophoresis
, vol.10
, pp. 397-404
-
-
Shafer, G.E.1
Price, M.A.2
Tullius, T.D.3
-
53
-
-
0026807036
-
Using hydroxyl radical to probe DNA-structure
-
Price, M. A. and Tullius, T. D. (1992) Using hydroxyl radical to probe DNA-structure. Methods Enzymol. 212, 194-219
-
(1992)
Methods Enzymol.
, vol.212
, pp. 194-219
-
-
Price, M.A.1
Tullius, T.D.2
-
55
-
-
33845553874
-
Cleavage of DNA with methidiumpropyl-EDTA-iron(II): Reaction conditions and product analyses
-
Hertzberg, R. P. and Dervan, P. B. (1982) Cleavage of DNA with methidiumpropyl-EDTA-iron(II): reaction conditions and product analyses. J. Am. Chem. Soc. 104, 313-315
-
(1982)
J. Am. Chem. Soc.
, vol.104
, pp. 313-315
-
-
Hertzberg, R.P.1
Dervan, P.B.2
-
56
-
-
0021762388
-
Cleavage of DNA with methidiumpropyl EDTA-iron(II) - Reaction conditions and product analyses
-
Hertzberg, R. P. and Dervan, P. B. (1984) Cleavage of DNA with methidiumpropyl EDTA-iron(II) - reaction conditions and product analyses. Biochemistry 23, 3934-3945
-
(1984)
Biochemistry
, vol.23
, pp. 3934-3945
-
-
Hertzberg, R.P.1
Dervan, P.B.2
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