Evolution of MHC class II Eβ diversity within the genus peromyscus

Genetics

Volumn 164, Issue 1, 2003, Pages 289-297

  Richman, Adam D ^a   Herrera, L Gerardo ^b   Nash, Deanna ^a  

^a MONTANA STATE UNIVERSITY   (United States)

^b UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO   (Mexico)

Author keywords

[No Author keywords available]

Indexed keywords

MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2E BETA; UNCLASSIFIED DRUG;

ALLELE; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; CRICETIDAE; GENE MUTATION; GENE SEQUENCE; GENETIC POLYMORPHISM; GENETIC RECOMBINATION; GENETIC VARIABILITY; MAJOR HISTOCOMPATIBILITY COMPLEX; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL;

AMINO ACID SEQUENCE; ANIMALS; EVOLUTION, MOLECULAR; HISTOCOMPATIBILITY ANTIGENS CLASS II; MOLECULAR SEQUENCE DATA; PEROMYSCUS; POLYMORPHISM, GENETIC; VARIATION (GENETICS);

ANIMALIA; CRICETINAE; PEROMYSCUS;

EID: 0037516816     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (39)

1. BERGSTROM, T. F., A. JOSEFSSON, H. A. ERLICH and U. GYLLENSTEN, 1998 Recent origin of HLA-DRB1 alleles and implications for human evolution. Nat. Genet. 18: 237-242.
2. BROWN, J. H., T. S. JARDETZKY, J. C. GORGA, L. J. STERN, R. G. URBAN et al., 1993 Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1. Nature 364: 33-39.
3. DOHERTY, P. C., and R. M. ZINKERNAGEL, 1975 Enhanced immunological surveillance in mice heterozygous at the H-2 gene complex. Nature 256: 50-52.
4. EDWARDS, S. V., K. CHESNUT, Y. SATTA and E. K. WAKELAND, 1997 Ancestral polymorphism of Mhc class II genes in mice: implications for balancing selection and the mammalian molecular clock. Genetics 146: 655-668.
5. ELLEGREN, H., G. HARTMAN, M. JOHANSSON and L. ANDERSSON, 1993 Major histocompatibility complex monomorphism and low levels of DNA fingerprinting variability in a reintroduced and rapidly expanding population of beavers. Proc. Natl. Acad. Sci. USA 90: 8150-8153.
6. ENGEL, S. R., K. M. HOGAN, J. F. TAYLOR and S. K. DAVIS, 1998 Molecular systematics and paleobiogeography of the South American sigmodontine rodents. Mol. Biol. Evol. 15: 35-49.
7. FEARNHEAD, P., and P. DONNELLY, 2001 Estimating recombination rates from population genetic data. Genetics 159: 1299-1318.
8. FELSENTEIN, J., 1996 PHYLIP (Phylogeny Inference Package). Department of Genetics, University of Washington, Seattle.
9. GO, Y., Y. SATTA, Y. KAWAMOTO, G. RAKOTOARISOA, A. RANDRIANJAFY et al., 2002 Mhc-DRB genes evolution in lemurs. Immunogenetics 54: 403-417.
10. GYLLENSTEN, U. B., M. SUNDVALL, and H. A. ERLICH, 1991 Allelic diversity is generated by intraexon sequence exchange at the DRB1 locus of primates. Proc. Natl. Acad. Sci. USA 88: 3686-3690.
11. HASEGAWA, M., H. KISHINO and T. YANO, 1987 Man's place in Hominoidea as inferred from molecular clocks of DNA. J. Mol. Evol. 26: 132-147.
12. HEDRICK, P. W., K. M. PARKER, G. A. GUTIERREZ-ESPELETA, A. RATTINK and K. LIEVERS, 2000 Major histocompatibility complex variation in the Arabian oryx. Evol. Int. J. Org. Evol. 54: 2145-2151.
13. HUDSON, R. R., 2002 Two-locus sampling distributions and their application. Genetics 160: 1231-1241.
14. HUGHES, A. L., and M. YEAGER, 1998 Natural selection at major histocompatibility complex loci of vertebrates. Annu. Rev. Genet. 32: 415-435.
15. KLEIN, J., Y. SATTA, N. TAKAHATA and C. O'HUIGIN, 1993 Trans-specific Mhc polymorphism and the origin of species in primates. J. Med. Primatol. 22: 57-64.
16. KUMAR, S., K. TAMURA, I. B. JAKOBSEN and M. NEI, 2001 MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17: 1244-1245.
17. MCVEAN, G. A. T., P. AWADALLA and P. FEARNHEAD, 2001 A coalescent-based method for detecting recombination from gene sequences. Genetics 160: 1231-1241.
18. MIKKO, S., and L. ANDERSSON, 1995 Low major histocompatibility complex class II diversity in European and North American moose. Proc. Natl. Acad. Sci. USA 92: 4259-4263.
19. MIKKO, S., K. ROED, S. SCHMUTZ and L. ANDERSSON, 1999 Monomorphism and polymorphism at Mhc DRB loci in domestic and wild ruminants. Immunol. Rev. 167: 169-178.
20. NEI, M., and T. GOJOBORI, 1986 Simple methods for estimating the numbers of synonymous and nonsynonymous substitutions. Mol. Biol. Evol. 3: 418-426.
21. O'BRIEN, S. J., and N. YUHKI, 1999 Comparative genome organization of the major histocompatibility complex: lessons from the Felidae. Immunol. Rev. 167: 133-144.
22. RICHMAN, A. D., G. HERRERA and D. NASH, 2001 MHC class II beta sequence diversity in the deermouse (Peromyscus maniculatus): implications for models of balancing selection. Mol. Ecol. 10: 2765-2773.
23. RICHMAN, A. D., G. HERRERA and D. NASH, 2002 Characterization of Peromyscus MHC Class II beta sequences by LA RT-PCR and DGGE. Eur. J. Immunogenet. 29: 213-217.
24. RICHMAN, A. D., L. G. HERRERA, D. NASH and M. SCHIERUP, 2003 Relative roles of mutation vs. recombination in generating allelic polymorphism at an MHC class II locus in Peromyscus maniculatus. Genet. Res. (in press).
25. RIDDLE, B. R., D. J. HAFNER and L. F. ALEXANDER, 2000 Phylogeography and systematics of the Peromyscus eremicus species group and the historical biogeography of North American warm regional deserts. Mol. Phylogenet. Evol. 17: 145-160.
26. SATTA, Y., 1997 Effects of intra-locus recombination of HLA polymorphism. Hereditas 127: 105-112.
27. SATTA, Y., C. O'HUIGIN, N. TAKAHATA and J. KLEIN, 1994 Intensity of natural selection at the major histocompatibility complex loci. Proc. Natl. Acad. Sci. USA 91: 7184-7188.
28. SATTA, Y., H. KUPFERMANN, Y. J. LI and N. TAKAHATA, 1999 Molecular clock and recombination in primate Mhc genes. Immunol. Rev. 167: 367-379.
29. SCHIERUP, M. H., A. M. MIKKELSEN and J. HEIN, 2001 Recombination, balancing selection and phylogenies in MHC and self-incompatibility genes. Genetics 159: 1833-1844.
30. SCHNEIDER, S., D. ROESSLI and L. EXCOFFIER, 2001 Arlequin: A Software for Population Genetics Analysis. Genetics and Biometry Laboratory, University of Geneva, Geneva.
31. SWOFFORD, D. L., 1998 Phylogenetic Analysis Using Parzimony (* and Other Methods). Sinauer Associates, Sunderland, MA.
32. TAKAHATA, N., 1995 MHC diversity and selection. Immunol. Rev. 143: 225-247.
33. TAKAHATA, N., and M. NEI, 1990 Allelic genealogy under overdominant and frequency-dependent selection and polymorphism of major histocompatibility complex loci. Genetics 124: 967-978.
34. TAKAHATA, N., and Y. SATTA, 1998a Improbable truth in human MHC diversity? Nat. Genet. 18: 204-206.
35. TAKAHATA, N., and Y. SATTA, 1998b Selection, convergence, and intragenic recombination in HLA diversity. Genetica 102/103: 157-169.
36. TAKAHATA, N., Y. SATTA and J. KLEIN, 1992 Polymorphism and balancing selection at major histocompatibility complex loci. Genetics 130: 925-938.
37. UYENOYAMA, M. K., 1997 Genealogical structure among alleles regulating self-incompatibilty in natural populations of flowering plants. Genetics 147: 1389-1400.
38. VAN DER WALT, J. M., L. H. NEL and A. R. HOELZEL, 2001 Characterization of major histocompatibility complex DRB diversity in the endemic South African antelope Damaliscus pygargus: a comparison in two subspecies with different demographic histories. Mol. Ecol. 10: 1679-1688.
39. VINCEK, V., C. O'HUIGIN, Y. SATTA, N. TAKAHATA, P. T. BOAG et al., 1997 How large was the founding population of Darwin's finches? Proc. R. Soc. Lond. Ser. B 264: 111-118.