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Volumn 43, Issue 3, 2003, Pages 861-869

Model carbyne knots vs ideal knots

Author keywords

[No Author keywords available]

Indexed keywords

ATOMS; CARBON; COMPUTATIONAL METHODS; CORRELATION METHODS; DNA; ELECTROPHORESIS; MATHEMATICAL MODELS; MOLECULAR STRUCTURE; STRAIN;

EID: 0037498083     PISSN: 00952338     EISSN: None     Source Type: Journal    
DOI: 10.1021/ci020063w     Document Type: Article
Times cited : (6)

References (56)
  • 1
    • 0032360392 scopus 로고    scopus 로고
    • Carbyne trefoil knots - Are they stable enough to exist
    • Dobrowolski, J. Cz.; Mazurek, A. P. Carbyne Trefoil Knots - Are They Stable Enough to Exist. Pol. J. Chem. 1998, 72, N.7S, 1593-1603.
    • (1998) Pol. J. Chem. , vol.72 , Issue.7 S , pp. 1593-1603
    • Dobrowolski, J.Cz.1    Mazurek, A.P.2
  • 3
  • 4
    • 0033602896 scopus 로고    scopus 로고
    • The Granny and square carbyne knots: Theoretical NMR spectra
    • Dobrowolski, J. Cz.; Mazurek, A. P. The Granny and Square Carbyne Knots: Theoretical NMR Spectra. J. Mol. Struct. 1999, 482-483, 339-342.
    • (1999) J. Mol. Struct. , vol.482-483 , pp. 339-342
    • Dobrowolski, J.Cz.1    Mazurek, A.P.2
  • 6
  • 7
    • 0035962527 scopus 로고    scopus 로고
    • On theoretical VCD, IR and Raman spectra of model chiral trefoil knots
    • Dobrowolski, J. Cz.; Mazurek, A. P. On Theoretical VCD, IR and Raman Spectra of Model Chiral Trefoil Knots. J. Mol. Struct. 2001, 563-564, 309-313.
    • (2001) J. Mol. Struct. , vol.563-564 , pp. 309-313
    • Dobrowolski, J.Cz.1    Mazurek, A.P.2
  • 8
    • 0012195832 scopus 로고    scopus 로고
    • On the qualitative theoretical NMR chemical shifts of model carbyne catenanes and knots
    • Dobrowolski, J. Cz.; Mazurek, A. P. On the qualitative theoretical NMR chemical shifts of model carbyne catenanes and knots. Chem. Phys. Lett. 2001, 348, 60-66.
    • (2001) Chem. Phys. Lett. , vol.348 , pp. 60-66
    • Dobrowolski, J.Cz.1    Mazurek, A.P.2
  • 9
    • 0036589067 scopus 로고    scopus 로고
    • On the belt and moebius isomers of the coronene molecule
    • Dobrowolski, J. Cz. On the Belt and Moebius Isomers of the Coronene Molecule. J. Chem. Inf. Comput. Sci. 2002, 42, 490-499.
    • (2002) J. Chem. Inf. Comput. Sci. , vol.42 , pp. 490-499
    • Dobrowolski, J.Cz.1
  • 14
    • 0032380023 scopus 로고    scopus 로고
    • Some aspects of the symmetry and topology of possible carbon allotrope structures
    • King, R. B. Some aspects of the symmetry and topology of possible carbon allotrope structures. J. Math. Chem. 1998, 23, 197-227.
    • (1998) J. Math. Chem. , vol.23 , pp. 197-227
    • King, R.B.1
  • 15
    • 0032148913 scopus 로고    scopus 로고
    • Small carbon clusters: Spectroscopy, structure, and energetics
    • Van Orden, A.; Saykally, R. J. Small Carbon Clusters: Spectroscopy, Structure, and Energetics. Chem. Rev. 1998, 98, 2313-2357.
    • (1998) Chem. Rev. , vol.98 , pp. 2313-2357
    • Van Orden, A.1    Saykally, R.J.2
  • 16
    • 0038596851 scopus 로고    scopus 로고
    • Does carbyne really exist? Carbynes in expanded graphite
    • Li, S.-Y.; Zhou, H.-H.; Gu, J.-L.; Zhu, J. Does carbyne really exist?carbynes in expanded graphite. Carbon 2000, 38, 929-941.
    • (2000) Carbon , vol.38 , pp. 929-941
    • Li, S.-Y.1    Zhou, H.-H.2    Gu, J.-L.3    Zhu, J.4
  • 17
    • 0000209964 scopus 로고    scopus 로고
    • A theoretical study on the molecular and electronic structure of heteroaromatic bowlshaped molecules
    • Delaere, D.; Nguyen, M. T.; Vanquickenborne, L. G. A theoretical study on the molecular and electronic structure of heteroaromatic bowlshaped molecules. Chem. Phys. Lett. 2001, 333, 103-112.
    • (2001) Chem. Phys. Lett. , vol.333 , pp. 103-112
    • Delaere, D.1    Nguyen, M.T.2    Vanquickenborne, L.G.3
  • 18
    • 1942508525 scopus 로고    scopus 로고
    • AM1 treatment of Hückel type cyclacenes
    • Türker, L. AM1 treatment of Hückel type cyclacenes. J. Mol. Struct. 1997, 407, 217-220.
    • (1997) J. Mol. Struct. , vol.407 , pp. 217-220
    • Türker, L.1
  • 19
    • 0346423024 scopus 로고    scopus 로고
    • MNDO treatment of the Hückel and Möbius types of cyclacenes
    • Türker, L. MNDO treatment of the Hückel and Möbius types of cyclacenes. J. Mol. Struct. (THEOCHEM) 1998, 454, 83-86.
    • (1998) J. Mol. Struct. (THEOCHEM) , vol.454 , pp. 83-86
    • Türker, L.1
  • 20
    • 17744419928 scopus 로고    scopus 로고
    • Zigzag cyclopolyacenes: A theoretical study
    • Türker, L. Zigzag cyclopolyacenes: a theoretical study. J. Mol. Struct. (THEOCHEM) 1999, 491, 275-280.
    • (1999) J. Mol. Struct. (THEOCHEM) , vol.491 , pp. 275-280
    • Türker, L.1
  • 21
    • 0035900228 scopus 로고    scopus 로고
    • PM3 treatment of certain catenanes having cyclacenes and cyclotriacontene units
    • Türker, L. PM3 treatment of certain catenanes having cyclacenes and cyclotriacontene units. J. Mol. Struct. (THEOCHEM) 2001, 574, 177-183.
    • (2001) J. Mol. Struct. (THEOCHEM) , vol.574 , pp. 177-183
    • Türker, L.1
  • 22
    • 0035936983 scopus 로고    scopus 로고
    • Cyclacenes having dislocated rings
    • Türker, L. Cyclacenes having dislocated rings. J. Mol Struct. (THEOCHEM) 2001, 556, 235-241.
    • (2001) J. Mol Struct. (THEOCHEM) , vol.556 , pp. 235-241
    • Türker, L.1
  • 23
    • 0034587284 scopus 로고    scopus 로고
    • Twist localisation in single, double and triple twisted möbius cyclacenes
    • Martin-Santamaria, S.; Rzepa, H. Twist localisation in Single, Double and Triple Twisted Möbius cyclacenes. J. Chem. Soc., Perkin Trans. 2 2000, 2378-2381.
    • (2000) J. Chem. Soc., Perkin Trans. 2 , pp. 2378-2381
    • Martin-Santamaria, S.1    Rzepa, H.2
  • 24
    • 0035587434 scopus 로고    scopus 로고
    • Möbius strip linear and cyclic polyacenes: A Hückel and semiempirical investigation
    • Guillaume, M.; Champagne, B.; Perpète, E. A.; André, J. M. Möbius strip linear and cyclic polyacenes: a Hückel and semiempirical investigation. Theor. Chem. Acc. 2001, 105, 431-436.
    • (2001) Theor. Chem. Acc. , vol.105 , pp. 431-436
    • Guillaume, M.1    Champagne, B.2    Perpète, E.A.3    André, J.M.4
  • 26
    • 0014187110 scopus 로고
    • Noncomplementarity in base sequences between the cohesive ends in coliphages 186 and λ and the formation of interlocked rings between the two DNA's
    • Wang, J. C.; Schwartz, H. Noncomplementarity in Base Sequences Between the Cohesive Ends in Coliphages 186 and λ and the Formation of Interlocked Rings between the Two DNA's. Biopolymers 1967, 5, 953-966.
    • (1967) Biopolymers , vol.5 , pp. 953-966
    • Wang, J.C.1    Schwartz, H.2
  • 27
    • 0014210552 scopus 로고
    • Catenated circular DNA molecules in HeLa cell mitochondria
    • Hudson, B.; Vinogrd, J. Catenated Circular DNA Molecules in HeLa Cell Mitochondria. Nature 1967, 216, 647-652.
    • (1967) Nature , vol.216 , pp. 647-652
    • Hudson, B.1    Vinogrd, J.2
  • 28
    • 0014170028 scopus 로고
    • Circular dimer and catenate forms of mitochondrial DNA in human leukaemic leucocytes
    • Clayton, D. A.; Vinogrd, J. Circular Dimer and Catenate Forms of Mitochondrial DNA in Human Leukaemic Leucocytes. Nature 1967, 216, 652-657.
    • (1967) Nature , vol.216 , pp. 652-657
    • Clayton, D.A.1    Vinogrd, J.2
  • 29
    • 0022518195 scopus 로고
    • Biochemical topology: Applications to DNA recombination and replication
    • Wasserman, S. A.; Cozzarelli, N. R. Biochemical Topology: Applications to DNA Recombination and Replication. Science 1986, 232, 951-960.
    • (1986) Science , vol.232 , pp. 951-960
    • Wasserman, S.A.1    Cozzarelli, N.R.2
  • 30
    • 0012127194 scopus 로고
    • DNA gyrase action involves the introduction of transitiont double-strand breaks into DNA
    • Mizuuchi, K.; Fisher, L. M.; O'Dea, M. H.; Gellert, M. DNA gyrase action involves the introduction of transitiont double-strand breaks into DNA. Proc. Natl. Acad. Sci. U.S.A. 1980, 77, 1847-1851.
    • (1980) Proc. Natl. Acad. Sci. U.S.A. , vol.77 , pp. 1847-1851
    • Mizuuchi, K.1    Fisher, L.M.2    O'Dea, M.H.3    Gellert, M.4
  • 31
    • 0021972652 scopus 로고
    • Discovery of a predicted DNA knot substances a model for site-specific recombination
    • Wasserman, S. A.; Dungan, J. M.; Cozzarelli, N. R. Discovery of a Predicted DNA Knot Substances a Model for Site-Specific Recombination. Science 1985, 229, 171-174.
    • (1985) Science , vol.229 , pp. 171-174
    • Wasserman, S.A.1    Dungan, J.M.2    Cozzarelli, N.R.3
  • 32
    • 0021846984 scopus 로고
    • Duplex DNA knots produced by Escherichia coli topoisomerase I
    • Dean, F. B.; Stasiak, A.; Koller, T.; Cozzarelli, N. R. Duplex DNA Knots Produced by Escherichia coli Topoisomerase I. J. Biol. Chem. 1985, 260, 4975-4983.
    • (1985) J. Biol. Chem. , vol.260 , pp. 4975-4983
    • Dean, F.B.1    Stasiak, A.2    Koller, T.3    Cozzarelli, N.R.4
  • 33
    • 0028151069 scopus 로고
    • Processive recombination by wild-type gin and an enhancer-independent mutant. Insight into the mechanisms of recombination selectivity and strand exchange
    • Crisona, N. J.; Kanaar, R.; Gonzalez, T. N.; Zechiedrich, E. L.; Klippel, A.; Cozzarelli, N. Processive Recombination by Wild-type Gin and an Enhancer-independent Mutant. Insight into the Mechanisms of Recombination Selectivity and Strand Exchange. J. Mol. Biol. 1994, 243, 437-457.
    • (1994) J. Mol. Biol. , vol.243 , pp. 437-457
    • Crisona, N.J.1    Kanaar, R.2    Gonzalez, T.N.3    Zechiedrich, E.L.4    Klippel, A.5    Cozzarelli, N.6
  • 34
    • 0022111794 scopus 로고
    • The stereostructure of knots and catenanes produced by phage λ integrative recombination: Implications for mechanism and DNA structure
    • Spengler, S. J.; Stasiak, A.; Cozzarelli, N. R. The Stereostructure of Knots and Catenanes Produced by Phage λ Integrative Recombination: Implications for Mechanism and DNA Structure. Cell 1985, 42, 325-334.
    • (1985) Cell , vol.42 , pp. 325-334
    • Spengler, S.J.1    Stasiak, A.2    Cozzarelli, N.R.3
  • 38
    • 0034636020 scopus 로고    scopus 로고
    • A topological invariant to predict the three-dimensional writhe of ideal configurations of knots and links
    • Cerf, C.; Stasiak, A. A topological invariant to predict the three-dimensional writhe of ideal configurations of knots and links. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 3795-3798.
    • (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 3795-3798
    • Cerf, C.1    Stasiak, A.2
  • 40
    • 0000941036 scopus 로고    scopus 로고
    • Ideal knots and their relation to the physics of real knots
    • Ideal Knots; Stasiak, A., Katritch, V., Kauffman, L. H., Eds.; World Scientific: Singapore, New Jersey, London, Hong Kong
    • Stasiak, A.; Dubochet, J.; Katritch, V.; Pieranski, P. Ideal knots and their relation to the physics of real knots. In Ideal Knots; Stasiak, A., Katritch, V., Kauffman, L. H., Eds.; Series on Knots and Everything Vol. 19, World Scientific: Singapore, New Jersey, London, Hong Kong, 1998.
    • (1998) Series on Knots and Everything , vol.19
    • Stasiak, A.1    Dubochet, J.2    Katritch, V.3    Pieranski, P.4
  • 41
    • 0033608997 scopus 로고    scopus 로고
    • Global curvature, thickness, and ideal shapes of knots
    • Gonzalez, O.; Maddocks, J. H. Global curvature, thickness, and ideal shapes of knots. Proc. Natl. Acad. U.S.A. 1999, 96, 4769-4773.
    • (1999) Proc. Natl. Acad. U.S.A. , vol.96 , pp. 4769-4773
    • Gonzalez, O.1    Maddocks, J.H.2
  • 42
    • 0038621106 scopus 로고    scopus 로고
    • Search of Ideal Knots; Stasiak, A., Katritch, V., Kauffman, L. H., Eds.; World Scientific: Singapore, New Jersey, London, Hong Kong
    • Pieranski, P. In Search of Ideal Knots; Stasiak, A., Katritch, V., Kauffman, L. H., Eds.; Series on Knots and Everything Vol. 19, World Scientific: Singapore, New Jersey, London, Hong Kong, 1998.
    • (1998) Series on Knots and Everything , vol.19
    • Pieranski, P.1
  • 43
    • 0035443951 scopus 로고    scopus 로고
    • Ideal trefoil knot
    • Pieranski, P.; Przybyl, S. Ideal trefoil knot. Phys. Rev. E 2000, 64, 031801-1-031801-5.
    • (2000) Phys. Rev. E , vol.64 , pp. 0318011-0318015
    • Pieranski, P.1    Przybyl, S.2
  • 45
    • 0031835961 scopus 로고    scopus 로고
    • Geometry and physics of catenanes applied to the study of DNA replication
    • Laune, B.; Katritch, V.; Sogo, J.; Koller, T.; Dubochet, J.; Stasiak, A. Geometry and Physics of Catenanes Applied to the Study of DNA Replication. Biophys. J. 1998, 74, 2815-2822.
    • (1998) Biophys. J. , vol.74 , pp. 2815-2822
    • Laune, B.1    Katritch, V.2    Sogo, J.3    Koller, T.4    Dubochet, J.5    Stasiak, A.6
  • 46
    • 0032546385 scopus 로고    scopus 로고
    • Tight knot values deviate from linear relations
    • Cantarella, J.; Kusner, R. B.; Sullivan, J. M. Tight knot values deviate from linear relations. Nature 1998, 392, 237-238.
    • (1998) Nature , vol.392 , pp. 237-238
    • Cantarella, J.1    Kusner, R.B.2    Sullivan, J.M.3
  • 47
    • 0032546348 scopus 로고    scopus 로고
    • Four-thirds power law for knots and links
    • Buck, G. Four-thirds power law for knots and links. Nature 1998, 392, 239-239.
    • (1998) Nature , vol.392 , pp. 239-239
    • Buck, G.1
  • 48
    • 4243653687 scopus 로고    scopus 로고
    • Crossings and write of flexible and ideal knots
    • Huang, J.-Y.; Lai, P.-Y. Crossings and write of flexible and ideal knots. Phys. Rev. E 2001, 63, 021506-1-021506-6.
    • (2001) Phys. Rev. E , vol.63 , pp. 0215061-0215066
    • Huang, J.-Y.1    Lai, P.-Y.2
  • 49
    • 84988115618 scopus 로고
    • Validation of the general purpose tripos 5.2 force field
    • Clark, M.; Cramer, R. D., III; van Opdenbosch, N. Validation of the General Purpose Tripos 5.2 Force Field. J. Comput. Chem. 1989, 10, 982-1012.
    • (1989) J. Comput. Chem. , vol.10 , pp. 982-1012
    • Clark, M.1    Cramer R.D. III2    Van Opdenbosch, N.3
  • 50
    • 0037571112 scopus 로고    scopus 로고
    • Merck molecular force field I. Basis, form, scope, parametrization, and performance of MMFF94
    • Halgren, T. A. Merck molecular force field I. Basis, form, scope, parametrization, and performance of MMFF94. J. Comput. Chem. 1996, 17, 490-519.
    • (1996) J. Comput. Chem. , vol.17 , pp. 490-519
    • Halgren, T.A.1
  • 51
    • 0011134241 scopus 로고    scopus 로고
    • Merck molecular force field II. MMFF94 van der Waals and electrostatic parameters for intermolecular interactions
    • Halgren, T. A. Merck molecular force field II. MMFF94 van der Waals and electrostatic parameters for intermolecular interactions. J. Comput. Chem. 1996, 17, 520-552.
    • (1996) J. Comput. Chem. , vol.17 , pp. 520-552
    • Halgren, T.A.1
  • 52
    • 0011143599 scopus 로고    scopus 로고
    • Merck molecular force field III. Molecular geometries and vibrational frequencies for MMFF94
    • Halgren, T. A. Merck molecular force field III. Molecular geometries and vibrational frequencies for MMFF94. J. Comput. Chem. 1996, 17, 553-586.
    • (1996) J. Comput. Chem. , vol.17 , pp. 553-586
    • Halgren, T.A.1
  • 53
    • 0001061464 scopus 로고    scopus 로고
    • Merck molecular force field IV. Conformational energies and geometries for MMFF94
    • Halgren, T. A.; Nachbar, R. B. Merck molecular force field IV. conformational energies and geometries for MMFF94. J. Comput. Chem. 1996, 17, 587-615.
    • (1996) J. Comput. Chem. , vol.17 , pp. 587-615
    • Halgren, T.A.1    Nachbar, R.B.2
  • 54
    • 5244268272 scopus 로고    scopus 로고
    • Merck molecular force field V. Extension of MMFF94 using experimental data, additional computational data, and empirical rules
    • Halgren, T. A. Merck molecular force field V. Extension of MMFF94 using experimental data, additional computational data, and empirical rules. J. Comput. Chem. 1996, 17, 616-641.
    • (1996) J. Comput. Chem. , vol.17 , pp. 616-641
    • Halgren, T.A.1
  • 55
    • 0842341771 scopus 로고
    • AM!: A new general purpose quantum mechanical molecular model
    • Dewar, M. J. S.; Zoebisch, E. G.; Healy, E. F. AM!: A New General Purpose Quantum Mechanical Molecular Model. J. Am. Chem. Soc. 1985, 107, 3902.
    • (1985) J. Am. Chem. Soc. , vol.107 , pp. 3902
    • Dewar, M.J.S.1    Zoebisch, E.G.2    Healy, E.F.3
  • 56
    • 0037920665 scopus 로고    scopus 로고
    • Wavefunction, Inc., 18401 Von Karman Ave., #370, Irvine, CA 92715 U.S.A.
    • Spartan version 4.0.3, Wavefunction, Inc., 18401 Von Karman Ave., #370, Irvine, CA 92715 U.S.A.
    • Spartan Version 4.0.3


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