Modeling of biological processes using self-cycling fermentation and genetic algorithms

Biotechnology and Bioengineering

Volumn 67, Issue 1, 2000, Pages 19-24

  Pinchuk, R J ^a   Brown, W A ^a   Hughes, S M ^a   Cooper, D G ^a  

^a MCGILL UNIVERSITY   (Canada)

Author keywords

Genetic algorithm (GA); Kinetics; Parameter estimation; Self cycling fermentation (SCF)

Indexed keywords

FERMENTATION; GENETIC ALGORITHMS; REGRESSION ANALYSIS;

SELF-CYCLING FERMENTATION;

BIOTECHNOLOGY;

ALGORITHM; ANALYTIC METHOD; ARTICLE; FERMENTATION; KINETICS; MATHEMATICAL MODEL;

ALGORITHMS; FERMENTATION; KINETICS; MODELS, BIOLOGICAL; MODELS, GENETIC; PHENOL; REPRODUCIBILITY OF RESULTS;

EID: 0034606674     PISSN: 00063592     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0290(20000105)67:1<19::AID-BIT3>3.0.CO;2-C     Document Type: Article

References (21)

1. Almeida JS, Reis MAM, Carrondo MJT. 1995. Competition between nitrate and nitrite reduction in denitrification by Pseudomonas fluorescens. Biotechnol Bioeng 46:476-484.
2. Bailey JE, Ollis DF. 1986. Biochemical engineering fundamentals, 2nd edition. New York: McGraw-Hill.
3. Brown WA, Cooper DG. 1991. Self-cycling fermentation applied to Adnetobacter calcoaceticus RAG-1. Appl Environ Microbiol 57: 2901-2906.
4. Chatterjee S, Laudatto M, Lynch LA. 1996. Genetic algorithms and their statistical applications: an introduction. Comp Stat Data Anal 22: 633-651.
5. D'Adamo PD, Rozich AF, Gaudy AF Jr. 1984. Analysis of growth data with inhibitory carbon sources. Biotechnol Bioeng 26:397-402.
6. Edwards VH. 1970. The influence of high substrate concentrations on microbial kinetics. Biotechnol Bioeng 12:679-412.
7. Hibbert BD. 1993. Genetic algorithms in chemistry. Chemometr Intell Lab Syst 19:277-293.
8. Hughes SM, Cooper DG. 1996. Biodegradation of phenol using the self-cycling fermentation (SCF). Proc Biotechnol Bioeng 51:112-119.
9. Kornaros M, Zafiri C, Lyberatos G. 1996. Kinetics of denitrification by Pseudomonas denitrificans under growth conditions limited by carbon and/or nitrate of nitrite. Water Environ Res 68:934-945.
10. Lewandowski GA, Baltzis BC. 1992. Analysis of sequencing batch reactors in large-scale denitrifying applications. Chem Eng Sci 47: 2389-2394.
11. Lobry JR, Flandrois JP. 1991. Comparison of estimates of Monod's growth model parameters from the same data set. Binary 3:20-23.
12. Mehra RK. 1974. Optimal input signals for parameter estimation in dynamic systems-survey and new results. IEEE Trans Autom Control 19:753-768.
13. Moriyama H, Shimizu K. 1996. On-line optimisation of culture temperature for ethanol fermentation using a genetic algorithm. J Chem Tech Biotechnol 96:217-222.
14. Park LJ, Park CH, Park C, Lee T. 1997. Application of genetic algorithms to parameter estimation of bioprocesses. Med Biol Eng Comp 35: 47-49.
15. Sheppard JD, Cooper DG. 1990. Development of computerized feedback control for the continuous phasing of Bacillus subtilis. Biotechnol Bioeng 36:539-545.
16. Takors R, Wiechert W, Weuster-Botz D. 1997. Experimental design for the identification of macrokinetic models and model discrimination. Biotechnol Bioeng 56:564-576.
17. van Walsum GP, Cooper DG. 1993. Self-cycling fermentation in a stirred tank reactor. Biotechnol Bioeng 42:1175-1180.
18. Versyck KJ, Claes JE, Van Impe JF. 1997. Practical identification of unstructured growth kinetics by application of optimal experimental design. Biotechnol Prog 13:524-531.
19. Wang J-H, Baltzis B-C, Lewandowski GA. 1994. Reduction of nitrate and nitrite in a cyclically operated continuous biological reactor. Biotechnol Bioeng 46:159-171.
20. Weuster-Botz D, Pramatarova G, Spassov G, Wandrey C. 1995. Use of a genetic algorithm in the development of a synthetic growth medium for Arthrobacter simplex with high hydrocortisone Δ1-dehydrogenase activity. J Chem Technol Biotechnol 64:386-392.
21. Yang RD, Humphrey AE. 1975. Dynamic and steady state studies of phenol biodegradation in pure and mixed cultures. Biotechnol Bioeng 17:1211-1235.