MELINA: Motif extraction from promoter regions of potentially co-regulated genes

Bioinformatics

Volumn 19, Issue 3, 2003, Pages 423-424

  Poluliakh, Natalia ^a,b   Takagi, Toshihisa ^a   Nakai, Kenta ^a  

^a THE UNIVERSITY OF TOKYO   (Japan)

^b OCHANOMIZU UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; TRANSCRIPTION FACTOR;

ARTICLE; COMPUTER PROGRAM; DNA SEQUENCE; GENE CONTROL; GENETIC ALGORITHM; GENETIC PARAMETERS; GENETIC TRANSCRIPTION; INTERMETHOD COMPARISON; NUCLEOTIDE SEQUENCE; ONLINE SYSTEM; PRIORITY JOURNAL; PROMOTER REGION; RELIABILITY; SENSITIVITY ANALYSIS; SEQUENCE ANALYSIS;

EID: 0037433051     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btf872     Document Type: Article

References (6)

1. Bailey,T.L. and Elkan,C. (1994) Fitting a mixture model by expection maximization to discover motifs in biopolymers. In Proceedings of 2nd International Conference on Intelligent Systems Molecular Biology. pp. 28-36.
2. Lawrence,C.E., Altschul,S.F., Boguski,M.S., Neuwald,A.F., Liu,J.S. and Wootton,J.C. (1993) Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. Science, 262, 208-214.
3. Stormo,G.D. (2000) DNA binding sites: representation and discovery. Bioinformatics, 16, 16-23.
4. Stormo,G.D. and Hartzell,G.W. (1989) Identifying protein-binding sites from unaligned DNA fragments. Proc. Natl Acad. Sci. USA, 86, 1183-1187.
5. Sze,S.-H., Gelfand,M.S. and Pevzner,P.A. (2002) Finding weak motifs in DNA sequences. In Proceedings of Pacific Symposium on Biocomputing. pp. 235-246.
6. Wolfertstetter,R, Frech,K., Herrmann,G. and Werner,T. (1996) Identification of functional elements in unaligned nucleic acid sequences by novel tuple search algorithm. CABIOS, 12, 71-80.