Inhibitory specificity change of the ovomucoid third domain of the silver pheasant upon introduction of an engineered Cys14-Cys39 bond

Biochemistry

Volumn 42, Issue 9, 2003, Pages 2524-2534

  Hemmi, Hikaru ^a   Kumazaki, Takashi ^b,f   Yamazaki, Toshimasa ^c   Kojima, Shuichi ^d   Yoshida, Takuya ^e   Kyogoku, Yoshimasa ^e   Katsu, Masataka ^b   Shinohara, Fumikazu ^b   Yokosawa, Hideyoshi ^b   Miura, Kin ichiro ^d   Kobayashi, Yuji ^e  

^a NATIONAL FOOD RESEARCH INSTITUTE   (Japan)

^b HOKKAIDO UNIVERSITY   (Japan)

^c NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^d GAKUSHUIN UNIVERSITY   (Japan)

^e OSAKA UNIVERSITY   (Japan)

^f AOMORI UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL BONDS; ENZYMES; NUCLEAR MAGNETIC RESONANCE; SILVER;

KAZAL-TYPE INHIBITOR;

BIOCHEMISTRY;

CYSTEINE DERIVATIVE; OVOMUCOID; TRYPSIN INHIBITOR;

ALPHA HELIX; AMINO ACID SEQUENCE; ARTICLE; BETA SHEET; BIRD; DISULFIDE BOND; ENZYME INHIBITION; ENZYME SPECIFICITY; NONHUMAN; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN ENGINEERING; PROTEIN FUNCTION; PROTON NUCLEAR MAGNETIC RESONANCE; SEQUENCE ANALYSIS; SITE DIRECTED MUTAGENESIS; STRUCTURE ANALYSIS;

AMINO ACID SUBSTITUTION; ANIMALS; ASPARAGINE; BIRDS; CATTLE; CHYMOTRYPSIN; CRYSTALLOGRAPHY, X-RAY; CYSTEINE; DISULFIDES; HUMANS; LEUKOCYTE ELASTASE; MODELS, MOLECULAR; MUTAGENESIS, SITE-DIRECTED; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; OVOMUCIN; PANCREATIC ELASTASE; PROLINE; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT PROTEINS; SERINE PROTEINASE INHIBITORS; STRUCTURE-ACTIVITY RELATIONSHIP; SWINE;

ASCIDIA; AVES; LOPHURA NYCTHEMERA; STREPTOMYCES GRISEUS; SUIDAE;

EID: 0037432322     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi026727c     Document Type: Article

References (61)

1. Laskowski, M., Jr., and Kato, I. (1980) Annu. Rev. Biochem. 49, 593-626.
2. Laskowski, M., Jr., Kato, I., Ardelt, W., Cook, J., Denton, A., Empie, M. W., Kohr, W. J., Park, S. J., Parks, K., Schatzley, B. L., Schoenberger, O. L., Tashiro, M., Vichot, G., Whatkey, H. F., Wieczorek, A., and Wieczorek, M. (1987) Biochemistry 26, 202-221.
3. Bode, W., and Huber, R. (1992) Eur. J. Biochem. 204, 433-451.
4. Read, R. J., Fujinaga, M., Sielecki, A. R., and James, M. N. G. (1983) Biochemistry 22, 4420-4433.
5. Fujinaga, M., Sielecki, A. R., Read, R. J., Ardelt, W., Laskowski, M., Jr., and James, M. N. G. (1987) J. Mol. Biol. 195, 397-418.
6. Papamokos, E., Weber, E., Bode, W., Huber, R., Empie, M. W., Kato, I., and Laskowski, M., Jr. (1982) J. Mol. Biol. 158, 515-537.
7. Bode, W., Epp, O., Huber, R., and Laskowski, M., Jr. (1985) Eur. J. Biochem. 147, 387-395.
8. Krezel, A. M., Darba, P., Robertson, A. D., Fejzo, J., Macura, S., and Markley, J. L. (1994) J. Mol. Biol. 242, 203-214.
9. Schechter, I., and Berger, A. (1967) Biochem. Biophys. Res. Commun. 27, 157-162.
10. Empie, M. W., and Laskowski, M., Jr. (1982) Biochemistry 21, 2274.
11. Ardelt, W., and Laskowski, M., Jr. (1985) Biochemistry 24, 5313-5320.
12. Read, R. J., and James, M. N. G. (1986) in Protease inhibitors (Barrett, A. J., and Salvesen, G., Eds.) pp 301-336, Elsevier, Amsterdam.
13. Hopkins, P. C. R., Chang, W.-S. W., Wardell, M. R., and Stone, S. R. (1997) J. Biol. Chem. 272, 3905-3909.
14. Kojima, S., Kumagai, I., and Miura, K. (1993) J. Mol. Biol. 230, 395-399.
15. Hemmi, H., Yoshida, T., Kumazaki, T., Nemoto, N., Hasegawa, J., Nishioka, F., Kyogoku, Y., Yokosawa, H., and Kobayashi, Y. (2002) Biochemistry 41, 10657-10664.
16. Yokosawa, H., Odajima, R., and Ishii, S. (1985) J. Biochem. 97, 1621-1630.
17. Tamaoki, H., Miura, R., Kusunoki, M., Kyogoku, Y., Kobayashi, Y., and Moroder, L. (1998) Protein Eng. 8, 649-659.
18. Kojima, S., Fushimi, N., Ikeda, A., Kumagai, I., and Miura, K. (1994) Gene 143, 239-243.
19. Kunkel, T. A. (1985) Proc. Natl. Acad. Sci. U.S.A. 82, 488-492.
20. Kumazaki, T., Fujitani, A., Terasaka, K., Shimura, K., Kasai, K., and Ishii, S. (1988) J. Biochem (Tokyo) 103, 297-301.
21. Hirs, C. H. W. (1967) Methods Enzymol. 11, 197-199.
22. Hermodson, M. A., Ericsson, L. H., Neurath, H., and Walsh, K. A. (1973) Biochemistry 12, 3146-3153.
23. Bidlingmeyer, B. A., Cohen, S. A., and Travis, T. L. (1984) J. Chromatogr. 336, 93-104.
24. Laemmli, U. K. (1970) Nature 227, 680-685.
25. Narahashi, Y. (1970) Methods Enzymol. 19, 3-20.
26. Kezdt, F. J., and Kaiser, E. T. (1970) Methods Enzymol. 19, 3-20.
27. Kumazaki, T., Ishii, S., and Yokosawa, H. (1994) J. Biochem. (Tokyo) 116, 787-793.
28. Bieth, J. G. (1995) Methods Enzymol. 248, 59-84.
29. Marion, D., and Wüthrich, K. (1983) Biochem. Biophys. Res. Commun. 113, 967-974.
30. Marion, D., Ikura, M., Tschundin, R., and Bax, A. (1989) J. Magn. Reson. 85, 393-399.
31. Rance, M., Sorensen, O. W., Bodenhausen, G., Wagner, G., Ernst, R. R., and Wüthrich, K. (1983) Biochim. Biophys. Acta 117, 479-485.
32. Davis, D. G., and Bax, A. (1985) J. Am. Chem. Soc. 107, 2820-2821.
33. Kumar, A., Ernst, R. R., and Wüthrich, K. (1980) Biochem. Biophys. Res. Commun. 95, 1-6.
34. Piotto, M., Saudek, V., and Sklenar, V. (1992) J. Biomol. NMR 2, 661-665.
35. Sklenar, V., Piotto, M., Leppik, R., and Saudek, V. (1993) J. Magn. Reson. 102, 241-245.
36. Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) J. Biomol. NMR 6, 277-293.
37. Wüthrich, K., Billetter, M., and Braun, W. (1983) J. Mol. Biol. 169, 949-961.
38. Clore, G. M., Gronenborn, A. M., Nilges, M., and Ryan, C. A. (1987) Biochemistry 26, 8012-8013.
39. Wagner, G., Braun, W., Havel, T. F., Schaumman, T., Go, N., and Wüthrich, K. (1987) J. Mol. Biol. 196, 611-639.
40. Nilges, M., Clore, G. M., and Gronenborn, A. M. (1988) FEBS Lett. 229, 317-324.
41. Brünger, A. T. (1992) X-PLOR. A system for X-ray crystallography and NMR, Yale University Press, New Haven, CT.
42. Laskowski, R. A., Rullmann, J. A. C., MacArthur, M. W., Kaptein, R., and Thornton, J. M. (1990) J. Biomol. NMR 8, 477-486.
43. Koradi, R., Billeter, M., and Wüthrich, K. (1996) J. Mol. Graphics 14, 51-55.
44. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950.
45. Kojima, S., Obata, S., Kumagai, I., and Miura, K. (1990) Biotechnology 8, 449-452.
46. Kowalski, D., Leary, T. R., McKee, R. E., Sealock, R. W., Wang, D., and Laskowski, M., Jr. (1974) in Proceeding of Bayer Symposium, V. Protease Inhibitors (Fritz, H., Tschesche, H., Greene, L. J., and Truscheit, E., Eds.) pp 311-324, Springer, Berlin.
47. Jallat, S., Carvallo, D., Tessier, L. H., Roecklin, D., Roitsch, C., Ogushi, F., Crystal, R. G., and Courtney, M. (1986) Protein Eng. 1, 29-35.
48. von Wilcken-Bergmann, B., Tilis, D., Sartorius, J., Auerwald, E. A., Schroder, W., and Müller-Hill, B. (1986) EMBO J. 5, 3219-3225.
49. Longstaff, C., Campbell, A. F., and Fersht, A. R. (1990) Biochemistry 29, 7339-7347.
50. Heinz, D. W., Hyberts, S. G., Peng, J. W., Priestle, J. P., Wagner, G., and Grutter, M. G. (1992) Biochemistry 31, 8755-8766.
51. Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids, John Wiley & Sons, New York.
52. Thornton, J. M. (1981) J. Mol. Biol. 151, 261-287.
53. Bode, W., Wei, A.-Z., Huber, R., Meyer, E., Travis, J., and Neumann, S. (1986) EMBO J. 5, 2453-2458.
54. James, M. N. G., Sielecki, A. R., Brayer, G. D., and Delbaere, L. T. J. (1980) J. Mol. Biol. 144, 43-88.
55. Perona, J. J., and Craik, C. S. (1997) J. Biol. Chem. 272, 29987-29990.
56. Bode, W., Meyer, E., Jr., and Powers, J. C. (1989) Biochemistry 28, 1951-1963.
57. Sommerhoff, C. P., Sollner, C., Mentele, R., Piechottka, G. P., Auerswald, E. A., and Fritz, H. (1994) Biol. Chem. Hoppe-Seyler 375, 685-694.
58. Friedrich, T., Kroger, B., Bialojan, S., Lemaire H. G., Hoffken, H. W., Reuscenbach, P., Otte, M., and Dodt, J. (1993) J. Biol. Chem. 268, 16216-16222.
59. Fink, E., Rehm, H., Gippner, C., Bode, W., Eulitz, M., Machleidt, W., and Fritz, H. (1986) Biol. Chem. Hoppe-Seyler 367, 1235-1242.
60. Kumazaki, T., Hoshiba, N., Yokosawa, H., and Ishii, S. (1990) J. Biochem. 107, 409-413.
61. Kumazaki, T., and Ishii, S. (1990) J. Biochem. 107, 414-419.