Comparative studies between hydrated hydrogen bonded and stacked DNA base pair

Chemical Physics Letters

Volumn 367, Issue 3-4, 2003, Pages 351-360

  Sivanesan, D ^a   Sumathi, I ^b   Welsh, William J ^a  

^a UNIVERSITY OF MISSOURI ST LOUIS   (United States)

^b TAMIL NADU AGRICULTURAL UNIVERSITY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0037421060     PISSN: 00092614     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0009-2614(02)01704-9     Document Type: Article

References (35)

1. W. Saenger, Principles of Nucleic Acid Structure, Springer, New York, 1988.
2. F. Moroni, A. Famulari, M. Raimondi, J. Phys. Chem. A 105 (2001) 1169.
3. D. Sivanesan, K. Babu, S.R. Gadre, V. Subramanian, T. Ramasami, J. Phys. Chem. A 104 (2000) 10887.
4. D. Sivanesan, V. Subramanian, B.U. Nair, T. Ramasami, Indian J. Chem. A 39 (2000) 132.
5. V. Subramanian, D. Sivanesan, T. Ramasami, Chem. Phys. Lett. 290 (1998) 189.
6. M. Orozco, C. Colominas, F.J. Luque, Chem. Phys. 209 (1996) 19.
7. C. Alemán, Chem. Phys. 253 (2000) 13.
8. M. Orozco, E. Cubero, X. Barril, C. Colominas, F.J. Luque, in: J. Leszczynski (Ed.), Computational Molecular Biology, Elsevier, Amsterdam, 1999.
9. C. Colominas, F.J. Luque, M.J. Orozc, Am. Chem. Soc. 118 (1996) 6811.
10. J. Sponer, P. Hobza, X. Leszcz, in: J. Leszcz (Ed.), Computational Chemistry: Reviews of Current Trends, World Scientific Publisher, Singapore, 1996.
11. T. van Mourik, S.L. Price, D.C. Clary, J. Phys. Chem. A 103 (1999) 1611.
12. L. Gorb, J. Leszczynski, Int. J. Quantum Chem. 65 (1997) 759.
13. N.U. Zhanpeisov, J. Sponer, J. Leszczynski, J. Phys. Chem. A 102 (1998) 10374.
14. L. Gorb, J. Leszczynski, Int. J. Quantum Chem. 70 (1998) 855.
15. L. Gorb, J. Leszczynski, J. Am. Chem. Soc. 112 (1990) 5024.
16. C.F. Guerra, F.M. Bickelhaupt, J.G. Snijders, E.J. Baerends, J. Am. Chem. Soc. 122 (2000) 4117.
17. J. Sponer, J. Leszczynski, P. Hobza, J. Comput. Chem. 17 (1996) 841.
18. P. Hobza, J. Spôner, Chem. Phys. Lett. 288 (1998) 7.
19. C.J. Cramer, D.G. Truhlar, Science 256 (1992) 213.
20. J. Tomasi, M. Persico, Chem. Rev. 94 (1994) 2027.
21. F.J. Luque, J. Zhang, C. Alemán, J. Gao, M. Orozco, J. Phys. Chem. 100 (1996) 4269.
22. A. Warshel, S.T. Russell, Quart. Rev. Biophys. 17 (1984) 283.
23. F.H.C. Crick, J.D. Watson, Proc. R. Soc. Lond. Ser. A 223 (1954) 80.
24. E. Giudice, P. Várnai, R. Lavery, Chem. Phys. Chem. 2 (2001) 673.
25. C.F. Guerra, M. Bickelhaupt, J.G. Snijders, E.J. Baerends, J. Am. Chem. Soc. 122 (2000) 4117.
26. SPARTAN 5.1, Wavefunction Inc., 2000.
27. M.J. Frisch et al., Gaussian Inc., Pittsburgh, PA, 1998.
28. The package GAMESS, M.W. Schmidt, K.K. Baldridge, J.A. Boatz, S.T. Elbert, M.S. Gordon, J.H. Jensen, S. Koseki, N. Matsunaga, K.A. Nguyen, S.J. Su, T.L. Windus, together with M. Dupuis, J.A. Montgomery, J. Comput. Chem. 14 (1993) 1347.
29. B. Luisi, M. Orozco, J. Sponer, F.J. Luque, Z. Shakkaed, J. Mol. Biol. 279 (1998) 1123.
30. M.G. Kubinec, D.E. Wemmer, J. Am. Chem. Soc. 114 (1992) 8739.
31. G.A. Jeffrey, W. Saenger, Hydrogen Bonding in Biological Structures, Springer, Berlin, 1991.
32. J.M. Rosenberg, N.C. Seeman, R.O. Day, A. Rich, J. Mol. Biol. 104 (1976) 145.
33. B. Schneider, H.M. Berman, Biophys. J. 69 (1995) 2661.
34. M. Federico, A. Famulari, M. Raimondi, J. Phys. Chem. A 105 (2001) 1169.
35. S.F. Boys, F. Bernardi, Mol. Phys. 19 (1970) 553.