Grouping and comparison of Indian citrus tristeza virus isolates based on coat protein gene sequences and restriction analysis patterns

Archives of Virology

Volumn 148, Issue 4, 2003, Pages 707-722

  Roy, A ^a,b   Ramachandran, P ^a   Brlansky, R H ^b  

^a INDIAN AGRICULTURAL RESEARCH INSTITUTE   (India)

^b UNIVERSITY OF FLORIDA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; BASE SEQUENCE; CAPSID PROTEINS; CITRUS AURANTIIFOLIA; CLOSTEROVIRUS; DNA PRIMERS; GENES, VIRAL; INDIA; MOLECULAR SEQUENCE DATA; PLANT DISEASES; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RESTRICTION MAPPING; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; VIRULENCE;

APHIDIDAE; CITRUS; CITRUS AURANTIIFOLIA; CITRUS TRISTEZA; CITRUS TRISTEZA VIRUS; CLOSTEROVIRUS;

EID: 0037390197     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-002-0947-7     Document Type: Article

References (17)

1. Ahlawat YS (1997) Viruses, greening bacterium and viroids associated with citrus (Citrus species) decline in India. Ind J Agric Sci 67(2): 51-57
2. Bar-Joseph M, Garnsey SM, Gonsalves D (1979) The closterovirus: a distinct group of elongated plant viruses. Adv Virus Res 25: 93-168
3. Cevik B, Pappu HR, Pappu SS, Tight D, Benscher D, Futch SH, Rucks P, Lee RF, Niblett CL (1996) Molecular cloning and sequencing of coat protein genes of citrus tristeza virus isolated from Meyer Lemon and Homely Tangor Trees in Florida. In: Proc 13th Conf Intern Organ Citrus Virol China 1995, IOCV, Riverside, California, pp 47-53
4. Clark MF, Adams AM (1977) Characteristics of the microplate method of enzyme-linked immunosorbent assay for the detection of plant viruses. J Gen Virol 34: 475-483
5. Gillings M, Broadbent P, Indsto J (1996) Restriction analysis of amplified CTV coat protein cDNA is a sensitive and rapid method for monitoring and controlling CTV infections. In: Proc 13th Conf Intern Organ Citrus Virol China 1995, IOCV, Riverside, California, pp 25-37
6. Gillings M, Civerolo EL, Gumpf DJ, Yokomi RK, Lee RF (1993) Characterization of isolates and strains of citrus tristeza closterovirus using restriction analysis of the coat protein gene amplified by polymerase chain reaction. J Virol Methods 44: 305-317
7. Hilf ME, Garnsey SM (2000) Characterization and classification of citrus tristeza virus isolates by amplification of multiple molecular markers. In: Proc 14th Conf Intern Organ Citrus Virol Brazil 1998, IOCV, Riverside, California, pp 18-27
8. Hilf ME, Karasev AN, Albiach-Marti RM, Dawson WO, Garnsey SM (1999) Two paths of sequence divergence in the citrus tristeza virus complex. Phytopathology 88: 685-691
9. Igloi GL (1983) A silver stain for the detection of nanogram amounts of tRNA following two dimensional electrophoresis. Anal Biochem 134: 184-188
10. Manjunath KL, Pappu HR, Lee RF, Niblett CL, Civerolo EL (1993) Studies on the coat protein genes of four isolates of citrus tristeza closterovirus from India: cloning, sequencing and expression. In: Proc 12th Conf Intern Organ Citrus Virol India 1992, IOCV, Riverside, California, pp 20-27
11. Nikolaeva OV, Karasev AV, Powell CA, Gumpf DJ, Garnsey SM, Lee RF (1996) Mapping of epitopes for citrus tristeza virus specific monoclonal antibodies using bacterially expressed coat protein fragments. Phytopathology 86: 974-979
12. Pappu HR, Pappu SS, Manjunath KL, Lee RF, Niblett CL (1993) Molecular characterization of a structural epitope that is largely conserved among severe isolates of a plant virus. Proc Natl Acad Sci 90: 3641-3644
13. Pappu HR, Pappu SS, Niblett CL, Lee RF, Civerolo E (1993) Comparative sequence analysis of the coat protein of biologically distinct citrus tristeza closterovirus isolates. Virus Genes 7: 255-264
14. Permar TA, Garnsey SM, Gumpf DJ, Lee RF (1990) A monoclonal antibody that discriminates strains of citrus tristeza virus. Phytopathology 80: 224-228
15. Sambrook J, Fritsh EF, Maniatis T (1989) Molecular cloning. A laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
16. Targon MLPN, Machado MA, Muller GW, Coletta Filho HD, Manjunath KL, Lee RF (2000) Sequence of coat protein gene of the severe citrus tristeza virus complex Capao Bonito. In: Proc 14th Conf Intern Organ Citrus Virol Brazil 1998, IOCV, Riverside, California, pp 121-126
17. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24: 4876-4882