-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
12644303230
-
The enolase superfamily: A general strategy for enzyme-catalyzed abstraction of the alpha-protons of carboxylic acids
-
Babbitt, P. C., M. S. Hasson, J. E. Wedekind, D. R. Palmer, W. C. Barrett, G. H. Reed, I. Rayment, D. Ringe, G. L. Kenyon, and J. A. Gerlt. 1996. The enolase superfamily: a general strategy for enzyme-catalyzed abstraction of the alpha-protons of carboxylic acids. Biochemistry 35:16489-16501.
-
(1996)
Biochemistry
, vol.35
, pp. 16489-16501
-
-
Babbitt, P.C.1
Hasson, M.S.2
Wedekind, J.E.3
Palmer, D.R.4
Barrett, W.C.5
Reed, G.H.6
Rayment, I.7
Ringe, D.8
Kenyon, G.L.9
Gerlt, J.A.10
-
3
-
-
0029651191
-
A functionally diverse enzyme superfamily that abstracts the alpha protons of carboxylic acids
-
Babbitt, P. C., G. T. Mrachko, M. S. Hasson, G. W. Huisman, R. Kolter, D. Ringe, G. A. Petsko, G. L. Kenyon, and J. A. Gerlt. 1995. A functionally diverse enzyme superfamily that abstracts the alpha protons of carboxylic acids. Science 267:1159-1161.
-
(1995)
Science
, vol.267
, pp. 1159-1161
-
-
Babbitt, P.C.1
Mrachko, G.T.2
Hasson, M.S.3
Huisman, G.W.4
Kolter, R.5
Ringe, D.6
Petsko, G.A.7
Kenyon, G.L.8
Gerlt, J.A.9
-
4
-
-
0000527093
-
Induction and repression of Pseudomonas aeruginosa amidase
-
Brammar, W. J., and P. H. Clarke. 1964. Induction and repression of Pseudomonas aeruginosa amidase. J. Gen. Microbiol. 37:307-319.
-
(1964)
J. Gen. Microbiol.
, vol.37
, pp. 307-319
-
-
Brammar, W.J.1
Clarke, P.H.2
-
5
-
-
0023767035
-
The molecular evolution of genes and proteins: A tale of two serines
-
Brenner, S. 1988. The molecular evolution of genes and proteins: a tale of two serines. Nature 334:528-530.
-
(1988)
Nature
, vol.334
, pp. 528-530
-
-
Brenner, S.1
-
6
-
-
0030571562
-
Study of the amidase signature group
-
Chebrou, H., F. Bigey, A. Arnaud, and P. Galzy. 1996. Study of the amidase signature group. Biochim. Biophys. Acta 1298:285-293.
-
(1996)
Biochim. Biophys. Acta
, vol.1298
, pp. 285-293
-
-
Chebrou, H.1
Bigey, F.2
Arnaud, A.3
Galzy, P.4
-
7
-
-
0023890672
-
Microbial metabolism of mandelate: A microcosm of diversity
-
Fewson, C. A. 1988. Microbial metabolism of mandelate: a microcosm of diversity. FEMS Microbiol. Rev. 4:85-110.
-
(1988)
FEMS Microbiol. Rev.
, vol.4
, pp. 85-110
-
-
Fewson, C.A.1
-
8
-
-
0001667709
-
The enzymatic conversion of mandelic acid to benzoic acid. III. Fractionation and properties of the soluble enzymes
-
Gunsalus, C. F., R. Y. Stanier, and I. C. Gunsalus. 1953. The enzymatic conversion of mandelic acid to benzoic acid. III. Fractionation and properties of the soluble enzymes. J. Bacteriol. 66:548-553.
-
(1953)
J. Bacteriol.
, vol.66
, pp. 548-553
-
-
Gunsalus, C.F.1
Stanier, R.Y.2
Gunsalus, I.C.3
-
9
-
-
0032516465
-
The crystal structure of benzoylformate decarboxylase at 1.6 Å resolution: Diversity of catalytic residues in thiamin diphosphate-dependent enzymes
-
Hasson, M. S., A. Muscate, M. J. McLeish, L. S. Polovnikova, J. A. Gerlt, G. L. Kenyon, G. A. Petsko, and D. Ringe. 1998. The crystal structure of benzoylformate decarboxylase at 1.6 Å resolution: diversity of catalytic residues in thiamin diphosphate-dependent enzymes. Biochemistry 37:9918-9930.
-
(1998)
Biochemistry
, vol.37
, pp. 9918-9930
-
-
Hasson, M.S.1
Muscate, A.2
McLeish, M.J.3
Polovnikova, L.S.4
Gerlt, J.A.5
Kenyon, G.L.6
Petsko, G.A.7
Ringe, D.8
-
10
-
-
0013892853
-
Synthesis of the enzymes of the mandelate pathway by Pseudomonas putida. I. Synthesis of enzymes by the wild type
-
Hegeman, G. D. 1966. Synthesis of the enzymes of the mandelate pathway by Pseudomonas putida. I. Synthesis of enzymes by the wild type. J. Bacteriol. 91:1140-1154.
-
(1966)
J. Bacteriol.
, vol.91
, pp. 1140-1154
-
-
Hegeman, G.D.1
-
11
-
-
0034817730
-
Aldehyde dehydrogenase. Maintaining critical active site geometry at motif 8 in the class 3 enzyme
-
Hempel, J., I. Kuo, J. Perozich, B. C. Wang, R. Lindahl, and H. Nicholas. 2001. Aldehyde dehydrogenase. Maintaining critical active site geometry at motif 8 in the class 3 enzyme. Eur. J. Biochem. 268:722-726.
-
(2001)
Eur. J. Biochem.
, vol.268
, pp. 722-726
-
-
Hempel, J.1
Kuo, I.2
Perozich, J.3
Wang, B.C.4
Lindahl, R.5
Nicholas, H.6
-
12
-
-
0029996889
-
Purification and properties of an amidase from Rhodococcus erythropolis MP50 which enantio-selectively hydrolyzes 2-arylpropionamides
-
Hirrlinger, B., A. Stolz, and H.-J. Knackmuss. 1996. Purification and properties of an amidase from Rhodococcus erythropolis MP50 which enantio-selectively hydrolyzes 2-arylpropionamides. J. Bacteriol. 178:3501-3507.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 3501-3507
-
-
Hirrlinger, B.1
Stolz, A.2
Knackmuss, H.-J.3
-
13
-
-
0014454706
-
The determination of urea, ammonia, and urease
-
Kaplan, A. 1969. The determination of urea, ammonia, and urease. Methods Biochem. Anal. 17:311-324.
-
(1969)
Methods Biochem. Anal.
, vol.17
, pp. 311-324
-
-
Kaplan, A.1
-
14
-
-
0024556880
-
The Pseudomonas oleovorans alkBAC operon encodes two structurally related rubredoxins and an aldehyde dehydrogenase
-
Kok, M., R. Oldenhuis, M. P. van der Linden, C. H. Meulenberg, J. Kingma, and B. Witholt. 1989. The Pseudomonas oleovorans alkBAC operon encodes two structurally related rubredoxins and an aldehyde dehydrogenase. J. Biol. Chem. 264:5442-5451.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 5442-5451
-
-
Kok, M.1
Oldenhuis, R.2
Van der Linden, M.P.3
Meulenberg, C.H.4
Kingma, J.5
Witholt, B.6
-
16
-
-
0034661490
-
Identification of active-site residues in Bradyrhizobium japonicum malonamidase E2
-
Koo, H. M., S. O. Choi, H. M. Kim, and Y. S. Kim. 2000. Identification of active-site residues in Bradyrhizobium japonicum malonamidase E2. Biochem. J. 349:501-507.
-
(2000)
Biochem. J.
, vol.349
, pp. 501-507
-
-
Koo, H.M.1
Choi, S.O.2
Kim, H.M.3
Kim, Y.S.4
-
17
-
-
0021918804
-
An improved method of ammonia determination, applicable to amidases and other ammonia-producing enzyme systems of mycobacteria
-
Krallmann-Wenzel, U. 1985. An improved method of ammonia determination, applicable to amidases and other ammonia-producing enzyme systems of mycobacteria. Am. Rev. Respir. Dis. 131:432-434.
-
(1985)
Am. Rev. Respir. Dis.
, vol.131
, pp. 432-434
-
-
Krallmann-Wenzel, U.1
-
18
-
-
0344806548
-
Selection of mandelamidase constitutive mutants in continuous culture of Pseudomonas putida
-
Laverack P. D., and P. H. Clarke. 1979. Selection of mandelamidase constitutive mutants in continuous culture of Pseudomonas putida. Biotechnol. Lett. 1:353-358.
-
(1979)
Biotechnol. Lett.
, vol.1
, pp. 353-358
-
-
Laverack, P.D.1
Clarke, P.H.2
-
19
-
-
0031005062
-
The first structure of an aldehyde dehydrogenase reveals novel interactions between NAD and the Rossmann fold
-
Liu, Z. J., Y. J. Sun, J. Rose, Y. J. Chung, C. D. Hsiao, W. R. Chang, I. Kuo, J. Perozich, R. Lindahl, J. Hempel, and B. C. Wang. 1997. The first structure of an aldehyde dehydrogenase reveals novel interactions between NAD and the Rossmann fold. Nat. Struct. Biol. 4:317-326.
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 317-326
-
-
Liu, Z.J.1
Sun, Y.J.2
Rose, J.3
Chung, Y.J.4
Hsiao, C.D.5
Chang, W.R.6
Kuo, I.7
Perozich, J.8
Lindahl, R.9
Hempel, J.10
Wang, B.C.11
-
20
-
-
0031921608
-
Cloning and characterization of the Pseudomonas aeruginosa zwf gene encoding glucose-6-phosphate dehydrogenase, an enzyme important in resistance to methyl viologen (paraquat)
-
Ma, J.-F., P. W. Hager, M. L. Howell, P. V. Phibbs, and D. J. Hassett. 1998. Cloning and characterization of the Pseudomonas aeruginosa zwf gene encoding glucose-6-phosphate dehydrogenase, an enzyme important in resistance to methyl viologen (paraquat). J. Bacteriol. 180:1741-1749.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 1741-1749
-
-
Ma, J.-F.1
Hager, P.W.2
Howell, M.L.3
Phibbs, P.V.4
Hassett, D.J.5
-
21
-
-
0025604503
-
Purification, cloning, and primary structure of an enantiomer-selective amidase from Brevibacterium sp. strain R312: Structural evidence for genetic coupling with nitrile hydratase
-
Mayaux, J. F., E. Cerebelaud, F. Soubrier, D. Faucher, and D. Pétré. 1990. Purification, cloning, and primary structure of an enantiomer-selective amidase from Brevibacterium sp. strain R312: structural evidence for genetic coupling with nitrile hydratase. J. Bacteriol. 172:6764-6773.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 6764-6773
-
-
Mayaux, J.F.1
Cerebelaud, E.2
Soubrier, F.3
Faucher, D.4
Pétré, D.5
-
22
-
-
0027751820
-
A novel structural basis for membrane association of a protein: Construction of a chimeric soluble mutant of (S)-mandelate dehydrogenase from Pseudomonas putida
-
Mitra, B., J. A. Gerlt, P. C. Babbitt, C. W. Koo, G. L. Kenyon, D. Joseph, and G. A. Petsko. 1993. A novel structural basis for membrane association of a protein: construction of a chimeric soluble mutant of (S)-mandelate dehydrogenase from Pseudomonas putida. Biochemistry 32:12959-12967.
-
(1993)
Biochemistry
, vol.32
, pp. 12959-12967
-
-
Mitra, B.1
Gerlt, J.A.2
Babbitt, P.C.3
Koo, C.W.4
Kenyon, G.L.5
Joseph, D.6
Petsko, G.A.7
-
23
-
-
0025109929
-
Mandelate racemase and muconate lactonizing enzyme are mechanistically distinct and structurally homologous
-
Neidhart, D. J., G. L. Kenyon, J. A. Gerlt, and G. A. Petsko. 1990. Mandelate racemase and muconate lactonizing enzyme are mechanistically distinct and structurally homologous. Nature 347:692-694.
-
(1990)
Nature
, vol.347
, pp. 692-694
-
-
Neidhart, D.J.1
Kenyon, G.L.2
Gerlt, J.A.3
Petsko, G.A.4
-
24
-
-
0033595722
-
Identification of two serine residues involved in catalysis by fatty acid amide hydrolase
-
Omeir, R. L., G. Arreaza, and D. G. Deutsch. 1999. Identification of two serine residues involved in catalysis by fatty acid amide hydrolase. Biochem. Biophys. Res. Commun. 264:316-320.
-
(1999)
Biochem. Biophys. Res. Commun.
, vol.264
, pp. 316-320
-
-
Omeir, R.L.1
Arreaza, G.2
Deutsch, D.G.3
-
25
-
-
0034705440
-
Clarifying the catalytic roles of conserved residues in the amidase signature family
-
Patricelli, M. P., and B. F. Cravatt. 2000. Clarifying the catalytic roles of conserved residues in the amidase signature family. J. Biol. Chem. 275:19177-19184.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 19177-19184
-
-
Patricelli, M.P.1
Cravatt, B.F.2
-
26
-
-
0033607236
-
Fatty acid amide hydrolase competitively degrades bioactive amides and esters through a nonconventional catalytic mechanism
-
Patricelli, M. P., and B. F. Cravatt. 1999. Fatty acid amide hydrolase competitively degrades bioactive amides and esters through a nonconventional catalytic mechanism. Biochemistry 38:14125-14130.
-
(1999)
Biochemistry
, vol.38
, pp. 14125-14130
-
-
Patricelli, M.P.1
Cravatt, B.F.2
-
27
-
-
0033520099
-
Chemical and mutagenic investigations of fatty acid amide hydrolase: Evidence for a family of serine hydrolases with distinct catalytic properties
-
Patricelli, M. P., M. A. Lovato, and B. F. Cravatt. 1999. Chemical and mutagenic investigations of fatty acid amide hydrolase: evidence for a family of serine hydrolases with distinct catalytic properties. Biochemistry 38:9804-9812.
-
(1999)
Biochemistry
, vol.38
, pp. 9804-9812
-
-
Patricelli, M.P.1
Lovato, M.A.2
Cravatt, B.F.3
-
28
-
-
0033771452
-
Shifting the NAD/NADP preference in class 3 aldehyde dehydrogenase
-
Perozich, J., I. Kuo, B. C. Wang, J. S. Boesch, R. Lindahl, and J. Hempel. 2000. Shifting the NAD/NADP preference in class 3 aldehyde dehydrogenase. Eur. J. Biochem. 267:6197-6203.
-
(2000)
Eur. J. Biochem.
, vol.267
, pp. 6197-6203
-
-
Perozich, J.1
Kuo, I.2
Wang, B.C.3
Boesch, J.S.4
Lindahl, R.5
Hempel, J.6
-
29
-
-
0032923555
-
Relationships within the aldehyde dehydrogenase extended family
-
Perozich, J., H. Nicholas, B. C. Wang, R. Lindahl, and J. Hempel. 1999. Relationships within the aldehyde dehydrogenase extended family. Protein Sci. 8:137-146.
-
(1999)
Protein Sci.
, vol.8
, pp. 137-146
-
-
Perozich, J.1
Nicholas, H.2
Wang, B.C.3
Lindahl, R.4
Hempel, J.5
-
30
-
-
0027487948
-
On the origin of enzymatic species
-
Petsko, G. A., G. L. Kenyon, J. A. Gerlt, D. Ringe, and J. W. Kozarich. 1993. On the origin of enzymatic species. Trends Biochem. Sci. 18:372-376.
-
(1993)
Trends Biochem. Sci.
, vol.18
, pp. 372-376
-
-
Petsko, G.A.1
Kenyon, G.L.2
Gerlt, J.A.3
Ringe, D.4
Kozarich, J.W.5
-
31
-
-
0024297512
-
Cloning, DNA sequence analysis, and expression in Escherichia coli of the gene for mandelate racemase from Pseudomonas putida
-
Ransom, S. C., J. A. Gerlt, V. M. Powers, and G. L. Kenyon. 1988. Cloning, DNA sequence analysis, and expression in Escherichia coli of the gene for mandelate racemase from Pseudomonas putida. Biochemistry 27:540-545.
-
(1988)
Biochemistry
, vol.27
, pp. 540-545
-
-
Ransom, S.C.1
Gerlt, J.A.2
Powers, V.M.3
Kenyon, G.L.4
-
32
-
-
0037013923
-
Structure of malonamidase E2 reveals a novel Ser-cisSer-Lys catalytic triad in a new serine hydrolase fold that is prevalent in nature
-
Shin, S., T. H. Lee, N. C. Ha, H. M. Koo, S. Y. Kim, H. S. Lee, Y. S. Kim, and B. H. Oh. 2002. Structure of malonamidase E2 reveals a novel Ser-cisSer-Lys catalytic triad in a new serine hydrolase fold that is prevalent in nature. EMBO J. 21:2509-2516.
-
(2002)
EMBO J.
, vol.21
, pp. 2509-2516
-
-
Shin, S.1
Lee, T.H.2
Ha, N.C.3
Koo, H.M.4
Kim, S.Y.5
Lee, H.S.6
Kim, Y.S.7
Oh, B.H.8
-
33
-
-
0013792750
-
Induction and multi-sensitive end-product repression in two converging pathways degrading aromatic substances in Pseudomonas fluorescens
-
Stevenson, I. L., and J. Mandelstam. 1965. Induction and multi-sensitive end-product repression in two converging pathways degrading aromatic substances in Pseudomonas fluorescens. Biochem. J. 96:354-362.
-
(1965)
Biochem. J.
, vol.96
, pp. 354-362
-
-
Stevenson, I.L.1
Mandelstam, J.2
-
35
-
-
0025013451
-
Mandelate pathway of Pseudomonas putida: Sequence relationship involving mandelate racemase, (S)-mandelate dehydrogenase, and benzoylformate decarboxylase and expression of benzoylformate decarboxylase in Escherichia coli
-
Tsou, A. Y., S. C. Ransom, J. A. Gerlt, D. D. Buechter, P. C. Babbitt, and G. L. Kenyon. 1990. Mandelate pathway of Pseudomonas putida: sequence relationship involving mandelate racemase, (S)-mandelate dehydrogenase, and benzoylformate decarboxylase and expression of benzoylformate decarboxylase in Escherichia coli. Biochemistry 29:9856-9862.
-
(1990)
Biochemistry
, vol.29
, pp. 9856-9862
-
-
Tsou, A.Y.1
Ransom, S.C.2
Gerlt, J.A.3
Buechter, D.D.4
Babbitt, P.C.5
Kenyon, G.L.6
-
36
-
-
0024963552
-
Selection and characterization of a mutant of the cloned gene for mandelate racemase that confers resistance to an affinity label by greatly enhanced production of enzyme
-
Tsou, A. Y., S. C. Ransom, J. A. Gerlt, V. M. Powers, and G. L. Kenyon. 1989. Selection and characterization of a mutant of the cloned gene for mandelate racemase that confers resistance to an affinity label by greatly enhanced production of enzyme. Biochemistry 28:969-975.
-
(1989)
Biochemistry
, vol.28
, pp. 969-975
-
-
Tsou, A.Y.1
Ransom, S.C.2
Gerlt, J.A.3
Powers, V.M.4
Kenyon, G.L.5
-
38
-
-
0014857719
-
The genetic control of dissimilatory pathways in Pseudomonas putida
-
Wheelis, M. L., and R. Y. Stanier. 1970. The genetic control of dissimilatory pathways in Pseudomonas putida. Genetics 66:245-266.
-
(1970)
Genetics
, vol.66
, pp. 245-266
-
-
Wheelis, M.L.1
Stanier, R.Y.2
|