The development of a highly informative mouse simple sequence length polymorphism (SSLP) marker set and construction of a mouse family tree using parsimony analysis

Genome Research

Volumn 13, Issue 3, 2003, Pages 485-491

  Witmer, Philip D ^a   Doheny, Kimberly F ^a   Adams, Marcia K ^a   Boehm, Corinne D ^a   Dizon, Jane S ^a   Goldstein, Janet L ^a   Templeton, Tira M ^a   Wheaton, Ariana M ^c   Dong, Penny N ^c   Pugh, Elizabeth W ^a   Nussbaum, Robert L ^b   Hunter, Kent ^e   Kelmenson, Jennifer A ^d   Rowe, Lucy B ^d   Brownstein, Michael J ^b  

^a JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b NATIONAL HUMAN GENOME RESEARCH INSTITUTE   (United States)

^c APPLIED BIOSYSTEMS   (United States)

^d JACKSON LABORATORY   (United States)

^e NATIONAL CANCER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FLUORESCENT DYE;

ARTICLE; CONTROLLED STUDY; GENE CONSTRUCT; GENE IDENTIFICATION; GENE MAPPING; GENE SEQUENCE; GENETIC POLYMORPHISM; MARKER GENE; MOUSE; MOUSE STRAIN; NONHUMAN; PARSIMONY ANALYSIS; PHYLOGENETIC TREE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

ALLELES; ANIMALS; CHROMOSOME MAPPING; GENETIC MARKERS; MICE; MICE, INBRED AKR; MICE, INBRED BALB C; MICE, INBRED C3H; MICE, INBRED C57BL; MICE, INBRED CBA; MICE, INBRED DBA; MICE, INBRED NOD; MICE, INBRED NZB; MICE, INBRED STRAINS; PHYLOGENY; POLYMORPHISM, GENETIC;

MURINAE; MUS MUSCULUS; MUS SPRETUS; MUSCULUS; RODENTIA;

EID: 0037348979     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.717903     Document Type: Article

References (18)

1. Atchley, W.R. and Fitch, W.M. 1993. Genetic affinities of inbred mouse strains of uncertain origin. Mol. Biol. Evol. 10: 1150-1169.
2. Beck, J.A., Lloyd, S., Hafezparast, M., Lennon-Pierce, M., Eppig, J.T., Festing, M.F., and Fisher, E.M. 2000. Genealogies of mouse inbred strains. Nature Genet. 24: 23-25.
3. Bonhomme, F. and Guenet, J.-L. 1996. The laboratory mouse and its wild relatives. In Genetic variants and strains of the laboratory mouse, 3rd ed. (eds. M.F. Lyon et al.), pp. 1577-1595. Oxford University Press, Oxford, UK.
4. Brownstein, M.J., Carpten, J.D., and Smith, J.R. 1996. Modulation of non-templated nucleotide addition by Taq DNA polymerase: Primer modifications that facilitate genotyping. Biotechniques 20: 1004-1006.
5. Dietrich, W.F., Miller, J., Steen, R., Merchant, M.A., Damron-Boles, D., Husain, Z., Dredge, R., Daly, M.J., Ingalls, K.A., O'Conner, T.J., et al. 1996. A comprehensive genetic map of the mouse genome. Nature 380: 149-152.
6. Felsenstein, J. 1989. PHYLIP-Phylogeny inference package (v. 3.2). Cladistics 5: 164-166.
7. Ferris, S.D., Sage, R.D., Prager, E.M., Ritte, U., and Wilson, A.C. 1983. Mitochondrial DNA evolution in mice. Genetics 105: 681-721.
8. Festing, M.F.W. 1996. Origins and characteristics of inbred strains of mice. In Genetic variants and strains of the laboratory mouse, 3rd ed. (eds. M.F. Lyon et al.), pp. 1537-1576. Oxford University Press, Oxford, UK.
9. Potter, M. 1978. Comments on the relationship of inbred strains to the genus Mus. In Origins of inbred mice. (ed. H.C. Morse III), pp. 497-509. Academic Press, New York, NY.
10. Rowe, L.B., Nadeau, J.H., Turner, R., Frankel, W.N., Letts, V., Eppig, J.T., Ko, M.S.H., Thurston, S.J., and Birkenmeier, E.H. 1994. Maps from two interspecific backcross DNA panels available as a community genetic mapping resource. Mamm. Genome 5: 253-274.
11. Schalkwyk, L.C., Jung, M., Daser, A., Weiher, M., Walter, J., Himmelbauer, H., and Lehrach, H. 1999. Panel of microsatellite markers for whole-genome scans and radiation hybrid mapping and a mouse family tree. Genome Res. 9: 878-887.
12. Silver, L.M. 1995. Mouse genetics: Concepts and applications, pp. 240-244. Oxford University Press, Oxford, UK.
13. Simpson, E.M., Linder, C.C., Sargent, E.E., Davisson, M.T., Mobraaten, L.E., and Sharp, J.J. 1997. Genetic variation among 129 substrains and its importance for targeted mutagenesis in mice. Nat. Genet. 16: 19-27.
14. Smith, J.R., Carpten, J.D., Brownstein, M.J., Ghosh, S., Magnuson, V.L., Gilbert, D.A., Trent, J.M., and Collins, F.S. 1995. Approach to genotyping errors caused by nontemplated nucleotide addition by Taq DNA polymerase. Genome Res. 5: 312-317.
15. Threadgill, D.W., Yee, D., Matin, A., Nadeau, J.H., and Magnuson, R. 1997. Genealogy of the 129 inbred strains: 129/SvJ is a contaminated inbred strain. Mamm. Genome 8: 390-393.
16. Tucker, P.K., Lee, B.K., Lundrigen, B.L., and Eicher, E.M. 1992. Geographic origin of the Y chromosome in "old" inbred strains of mice. Mamm. Genome 3: 254-261.
17. Wakeland, E., Morel, L., Achey, K., Yui, M., and Longmate, J. 1997. Speed congenics: A classic technique in the fast lane (relatively speaking). Immunol. Today 18: 472-477.
18. Weber, J. and Wong, C. 1993. Mutation of human short tandem repeats. Hum. Mol. Genet. 2: 1123-1128.