메뉴 건너뛰기




Volumn 21, Issue 5, 2003, Pages 421-433

Comparison of chemical clustering methods using graph- and fingerprint-based similarity measures

Author keywords

Bit string; Chemical graph; Chemical series; Clustering method; Fingerprint; Maximum common subgraph; Molecular similarity; Similarity

Indexed keywords

GENES; STRUCTURE (COMPOSITION);

EID: 0037348826     PISSN: 10933263     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1093-3263(02)00188-2     Document Type: Article
Times cited : (57)

References (31)
  • 2
    • 0346494490 scopus 로고
    • Single-link clustering algorithms
    • F.J. Rohlf, Single-link clustering algorithms, in: Handbook of Stat, 1982, pp. 267-284.
    • (1982) Handbook of Stat , pp. 267-284
    • Rohlf, F.J.1
  • 3
    • 0015680655 scopus 로고
    • Clustering using a similarity measure based on shared near neighbors
    • Jarvis R.A., Patrick E.A. Clustering using a similarity measure based on shared near neighbors. IEEE Transac. Comput. 22:1973;1025-1034.
    • (1973) IEEE Transac. Comput. , vol.22 , pp. 1025-1034
    • Jarvis, R.A.1    Patrick, E.A.2
  • 5
    • 0013965569 scopus 로고
    • Relations between chemical structure and biological activity in peptides
    • Sneath P.H.A. Relations between chemical structure and biological activity in peptides. J. Theor. Biol. 12:1966;157-195.
    • (1966) J. Theor. Biol. , vol.12 , pp. 157-195
    • Sneath, P.H.A.1
  • 6
    • 0346494488 scopus 로고
    • A method of cluster analysis and some applications
    • Harrison P.J. A method of cluster analysis and some applications. Appl. Stat. 17:1968;226-236.
    • (1968) Appl. Stat. , vol.17 , pp. 226-236
    • Harrison, P.J.1
  • 7
    • 0012703034 scopus 로고
    • A method for the automatic classification of chemical structures
    • Adamson G.W., Bush J.A. A method for the automatic classification of chemical structures. Inf. Storage Ret. 9:1973;561-568.
    • (1973) Inf. Storage Ret. , vol.9 , pp. 561-568
    • Adamson, G.W.1    Bush, J.A.2
  • 8
    • 0019633125 scopus 로고
    • Comparison of hierarchical cluster analysis techniques for the automatic classification of chemical structures
    • Adamson G.W., Bawden D. Comparison of hierarchical cluster analysis techniques for the automatic classification of chemical structures. J. Chem. Inf. Comput. Sci. 21:1981;204-209.
    • (1981) J. Chem. Inf. Comput. Sci. , vol.21 , pp. 204-209
    • Adamson, G.W.1    Bawden, D.2
  • 10
    • 0028496956 scopus 로고
    • Similarity searching and clustering of chemical-structure databases using molecular property data
    • Downs G.M., Willett P., Fisanick W. Similarity searching and clustering of chemical-structure databases using molecular property data. J. Chem. Inf. Comput. Sci. 34:1994;1094-1102.
    • (1994) J. Chem. Inf. Comput. Sci. , vol.34 , pp. 1094-1102
    • Downs, G.M.1    Willett, P.2    Fisanick, W.3
  • 11
    • 0342645323 scopus 로고    scopus 로고
    • Use of structure-activity data to compare structure-based clustering methods and descriptors for use in compound selection
    • Brown R.D., Martin Y.C. Use of structure-activity data to compare structure-based clustering methods and descriptors for use in compound selection. J. Chem. Inf. Comput. Sci. 36:1996;572-584.
    • (1996) J. Chem. Inf. Comput. Sci. , vol.36 , pp. 572-584
    • Brown, R.D.1    Martin, Y.C.2
  • 12
    • 5244364312 scopus 로고    scopus 로고
    • The information content of 2D and 3D structural descriptors relevant to ligand-receptor binding
    • Brown R.D., Martin Y.C. The information content of 2D and 3D structural descriptors relevant to ligand-receptor binding. J. Chem. Inf. Comput. Sci. 37:1997;1-9.
    • (1997) J. Chem. Inf. Comput. Sci. , vol.37 , pp. 1-9
    • Brown, R.D.1    Martin, Y.C.2
  • 13
    • 84944178665 scopus 로고
    • Hierarchical grouping to optimize an objective function
    • Ward J.H. Hierarchical grouping to optimize an objective function. J. Am. Statist. Ass. 58:1963;236-244.
    • (1963) J. Am. Statist. Ass. , vol.58 , pp. 236-244
    • Ward, J.H.1
  • 14
    • 0020848951 scopus 로고
    • A survey of recent advances in hierarchical clustering algorithms
    • Murtagh F. A survey of recent advances in hierarchical clustering algorithms. Comput. J. 26:1983;354-359.
    • (1983) Comput. J. , vol.26 , pp. 354-359
    • Murtagh, F.1
  • 16
    • 0036522746 scopus 로고    scopus 로고
    • Heuristics for rapid similarity searching of chemical graphs using a maximum common edge subgraph algorithm
    • Raymond J., Gardiner E., Willett P. Heuristics for rapid similarity searching of chemical graphs using a maximum common edge subgraph algorithm. J. Chem. Inf. Comput. Sci. 42:2002;305-316.
    • (2002) J. Chem. Inf. Comput. Sci. , vol.42 , pp. 305-316
    • Raymond, J.1    Gardiner, E.2    Willett, P.3
  • 17
    • 0036448558 scopus 로고    scopus 로고
    • RASCAL: Calculation of graph similarity using maximum common edge subgraphs
    • Raymond J., Gardiner E., Willett P. RASCAL: calculation of graph similarity using maximum common edge subgraphs. Comput. J. 45:2002;631-644.
    • (2002) Comput. J. , vol.45 , pp. 631-644
    • Raymond, J.1    Gardiner, E.2    Willett, P.3
  • 18
    • 0036022963 scopus 로고    scopus 로고
    • Effectiveness of graph-based and fingerprint-based similarity measures for virtual screening of 2D chemical structure databases
    • Raymond J., Willett P. Effectiveness of graph-based and fingerprint-based similarity measures for virtual screening of 2D chemical structure databases. J. Comput.-Aided Mol. Des. 16:2002;59-71.
    • (2002) J. Comput.-Aided Mol. Des. , vol.16 , pp. 59-71
    • Raymond, J.1    Willett, P.2
  • 20
    • 0000462999 scopus 로고    scopus 로고
    • Comparison of 2D fingerprint types and hierarchy level selection methods for structural grouping using Ward's clustering
    • Wild D.J., Blankley C.J. Comparison of 2D fingerprint types and hierarchy level selection methods for structural grouping using Ward's clustering. J. Chem. Inf. Comput. Sci. 40:2000;155-162.
    • (2000) J. Chem. Inf. Comput. Sci. , vol.40 , pp. 155-162
    • Wild, D.J.1    Blankley, C.J.2
  • 21
    • 0024165230 scopus 로고
    • A technique for cluster formation
    • Umesh R.M. A technique for cluster formation. Patt. Recog. 21:1988;393-400.
    • (1988) Patt. Recog. , vol.21 , pp. 393-400
    • Umesh, R.M.1
  • 23
    • 0142169800 scopus 로고    scopus 로고
    • A line graph algorithm for clustering chemical structures based on common substructural cores
    • in press
    • J. Raymond, P. Willett, A line graph algorithm for clustering chemical structures based on common substructural cores. MATCH, in press.
    • MATCH
    • Raymond, J.1    Willett, P.2
  • 24
    • 0029831680 scopus 로고    scopus 로고
    • An automated approach for clustering an ensemble of NMR-derived protein structures into conformationally-related subfamilies
    • Kelley L.A., Gardner S.P., Sutcliffe M.J. An automated approach for clustering an ensemble of NMR-derived protein structures into conformationally-related subfamilies. Protein Eng. 9:1996;1063-1065.
    • (1996) Protein Eng. , vol.9 , pp. 1063-1065
    • Kelley, L.A.1    Gardner, S.P.2    Sutcliffe, M.J.3
  • 25
    • 0001020756 scopus 로고
    • A new non-iterative approach for clustering
    • Yin P.Y., Chen L.H. A new non-iterative approach for clustering. Patt. Recog. Lett. 15:1994;125-133.
    • (1994) Patt. Recog. Lett. , vol.15 , pp. 125-133
    • Yin, P.Y.1    Chen, L.H.2
  • 26
    • 0000228352 scopus 로고
    • A Monte Carlo study of 30 internal criterion measures for cluster analysis
    • Milligan G.W. A Monte Carlo study of 30 internal criterion measures for cluster analysis. Psychometrika. 46:1980;187-199.
    • (1980) Psychometrika , vol.46 , pp. 187-199
    • Milligan, G.W.1
  • 27
    • 0037118191 scopus 로고    scopus 로고
    • Partition-distance: A problem and class of perfect graphs arising in clustering
    • Gusfield D. Partition-distance: a problem and class of perfect graphs arising in clustering. Inf. Proc. Lett. 82:2002;159-164.
    • (2002) Inf. Proc. Lett. , vol.82 , pp. 159-164
    • Gusfield, D.1
  • 28
    • 34250097087 scopus 로고
    • Algorithms and codes for the assignment problem
    • Carpaneto G., Martello S., Toth P. Algorithms and codes for the assignment problem. Ann. Oper. Res. 13:1988;193-223.
    • (1988) Ann. Oper. Res. , vol.13 , pp. 193-223
    • Carpaneto, G.1    Martello, S.2    Toth, P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.