Characterization of the Streptomyces sp. strain C5 snp locus and development of snp-derived expression vectors

Applied and Environmental Microbiology

Volumn 69, Issue 3, 2003, Pages 1647-1654

  DeSanti, Charles L ^a,c   Strohl, William R ^b  

^a OHIO STATE UNIVERSITY   (United States)

^b MERCK RESEARCH LABORATORIES   (United States)

^c BATTELLE MEMORIAL INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOSYNTHESIS; CELLS; MICROBIOLOGY;

ENDOSTATIN;

GENES;

BACTERIAL PROTEIN; DAUNORUBICIN; ENDOSTATIN; PROTEIN SNPA; PROTEIN SNPR; UNCLASSIFIED DRUG;

FUNGUS;

ARTICLE; BACTERIAL STRAIN; BIOSYNTHESIS; CODON; CONTROLLED STUDY; EXPRESSION VECTOR; GENE EXPRESSION; GENE LOCUS; GENETIC TRANSCRIPTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PROMOTER REGION; REPORTER GENE; SEQUENCE ANALYSIS; STREPTOMYCES; TRANSCRIPTION INITIATION SITE;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; BASE SEQUENCE; COLLAGEN; ENDOSTATINS; GENETIC VECTORS; HUMANS; METALLOENDOPEPTIDASES; MOLECULAR SEQUENCE DATA; PEPTIDE FRAGMENTS; PLASMIDS; RECOMBINANT PROTEINS; SEQUENCE ANALYSIS, DNA; STREPTOMYCES; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

ACTINOBACTERIA (CLASS); ANIMALIA; BACTERIA (MICROORGANISMS); FUNGI; STREPTOMYCES; STREPTOMYCES SP.; UNCULTURED ACTINOMYCETE; VECTORS;

EID: 0037337424     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.69.3.1647-1654.2003     Document Type: Article

References (31)

1. Ausubel, F. M., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl. 2000. Current protocols in molecular biology. J. Wiley & Sons, New York, N.Y.
2. Balbas, P., X. Soberon, E. Merino, M. Zurita, H. Lomeli, F. Valle, N. Flores, and F. Bolivar. 1986. Plasmid vector pBR322 and its special-purpose derivatives-a review. Gene 50:3-40.
3. Binnie, C., J. D. Cossar, and D. I. Stewart. 1997. Heterologous biopharmaceutical protein expression in Streptomyces. Trends Biotechnol. 15:315-320.
4. Bourn, W. R., and B. Babb. 1995. Computer assisted identification and classification of streptomycete promoters. Nucleic Acids Res. 23:3696-3703.
5. Butler, M. J., C. C. Davey, P. Krygsman, E. Walczyk, and L. T. Malek. 1992. Cloning of genetic loci involved in endoprotease activity in Streptomyces lividans 66: a novel neutral protease gene with an adjacent divergent putative regulatory gene. Can. J. Microbiol. 38:912-920.
6. Carter, M. J., and I. D. Milton. 1993. An inexpensive and simple method for DNA purifications on silica particles. Nucleic Acids Res. 23:1044.
7. Dammann, T., and W. Wohlleben. 1992. A metalloprotease gene from Streptomyces coelicolor 'Muller' and its transcriptional activator, a member of the LysR family. Mol. Microbiol. 6:2267-2278.
8. a. DeSanti, C. L. 2000. Ph.D. thesis. The Ohio State University, Columbus.
9. Devereux, J., P. Haeberli, and O. Smithies. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:387-395.
10. Dickens, M. L., and W. R. Strohl. 1996. Isolation and characterization of a gene from Streptomyces sp. strain C5 that confers the ability to convert daunomycin to doxorubicin on Streptomyces lividans TK24. J. Bacteriol. 178: 3389-3395.
11. Dodd, I. B., and J. B. Egan. 1990. Improved detection of helix-turn-helix DNA-binding motifs in protein sequences. Nucleic Acids Res. 18:5019-5026.
12. Fornwald, J. A., M. J. Donovan, R. Gerber, J. Keller, D. P. Taylor, E. J. Arcuri, and M. E. Brawner. 1993. Soluble forms of the human T cell receptor CD4 are efficiently expressed by Streptomyces lividans. Bio/Technology 11:1031-1036.
13. Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95-98.
14. Henikoff, S., G. W. Haughn, J. M. Calvo, and J. C. Wallace. 1988. A large family of bacterial activator proteins. Proc. Natl. Acad. Sci. USA 85:6602-6606.
15. Hopwood, D. A. 1985. Genetic manipulation of Streptomyces: a laboratory manual. The John Innes Foundation, Norwich, England.
16. Janssen, G. R. 1993. Eubacterial, archaebacterial, and eukaryotic genes that encode leaderless mRNA, p.59-67. In R. H. Baltz, G. D. Hegeman, and P. L. Skatrud (ed.), Industrial microorganisms: basic and applied molecular genetics. American Society for Microbiology, Washington, D.C.
17. Lampel, J. S., J. S. Aphale, K. A. Lampel, and W. R. Strohl. 1992. Cloning and sequencing of a gene encoding a novel extracellular neutral proteinase from Streptomyces sp. strain C5 and expression of the gene in Streptomyces lividans 1326. J. Bacteriol. 174:2797-2808.
18. Lichenstein, H. S., L. A. Busse, G. A. Smith, L. O. Narhi, M. O. McGinley, M. F. Rohde, J. L. Katzowitz, and M. M. Zukowski. 1992. Cloning and characterization of a gene encoding extracellular metalloprotease from Streptomyces lividans. Gene 111:125-130.
19. Neal, R. J., and K. F. Chater. 1991. Bidirectional promoter and terminator regions bracket mmr, a resistance gene embedded in the Streptomyces coelicolor A3(2) gene cluster encoding methylenomycin production. Gene 100:75-83.
20. O'Reilly, M. S., T. Boehm, Y. Shing, N. Fukai, G. Vasios, W. S. Lane, E. Flynn, J. R. Birkhead, B. R. Olsen, and J. Folkman. 1997. Endostatin: an endogenous inhibitor of angiogenesis and tumor growth. Cell 88:277-285.
21. Rajgarhia, V. B., and W. R. Strohl. 1997. Minimal Streptomyces sp. strain C5 daunorubicin polyketide biosynthesis genes required for aklanonic acid biosynthesis. J. Bacteriol. 179:2690-2696.
22. Reese, M. G., N. L. Harris, and F. H. Eeckman. 1996. Large scale sequencing specific neural networks for promoter and splice site recognition. In L. H. a. T. E. Klein (ed.), Biocomputing: proceedings of the 1996 pacific symposium. World Scientific Publishing Company, Singapore, Republic of Singapore.
23. a. Richardson, M. A., S. Kuhstoss, P. Solenberg, N. A. Schaus, and R. N. Rao. 1987. A new shuttle cosmid vector, pKC5050, for streptomycetes: its use in the cloning of three different spiramycin-resistance genes from a Streptomyces ambofaciens library. Gene 61:231-241
24. Saarela, J., R. Ylikarppa, M. Rehn, S. Purmonen, and T. Pihlajaniemi. 1998. Complete primary structure of two variant forms of human type XVIII collagen and tissue-specific differences in the expression of the corresponding transcripts. Matrix Biol. 16:319-328.
25. Sambrook, J., T. Maniatis, and E. F. Fritsch. 1982. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
26. Sanger, F., S. Nicklen, and A. R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74:5463-5467.
27. Schell, M. A. 1993. Molecular biology of the LysR family of transcriptional regulators. Annu. Rev. Microbiol. 47:597-626.
28. Strohl, W. R. 1992. Compilation and analysis of DNA sequences associated with apparent streptomycete promoters. Nucleic Acids Res. 20:961-974.
29. Strohl, W. R., M. L. Dickens, and C. L. DeSanti. October 1999. U.S. patent no. 5,962,293.
30. Tedin, K., I. Moll, S. Grill, A. Resch, A. Graschopf, C. O. Gualerzi, and U. Blasi. 1999. Translation initiation factor 3 antagonizes authentic start codon selection on leaderless mRNAs. Mol. Microbiol. 31:67-77.
31. Warnes, A., and J. R. Stephenson. 1986. The insertion of large pieces of foreign genetic material reduces the stability of bacterial plasmids. Plasmid 16:116-123.