-
1
-
-
0019876473
-
Optimal computer folding of larger RNA sequences using thermodynamics and auxiliary information
-
Zuker,M. and Stiegler,P. (1981) Optimal computer folding of larger RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res., 9, 133-148.
-
(1981)
Nucleic Acids Res.
, vol.9
, pp. 133-148
-
-
Zuker, M.1
Stiegler, P.2
-
2
-
-
0000616205
-
RNA secondary structures and their prediction
-
Zuker,M. and Sankoff,D. (1984) RNA secondary structures and their prediction. Bull. Math. Biol., 46, 591-621.
-
(1984)
Bull. Math. Biol.
, vol.46
, pp. 591-621
-
-
Zuker, M.1
Sankoff, D.2
-
3
-
-
34249772381
-
Fast folding and comparison of RNA secondary structures
-
Hofacker,I.L., Fontana,W., Stadler,P.F., Bonhoeffer,S., Tacker,M. and Schuster,P. (1994) Fast folding and comparison of RNA secondary structures. Monatsh. Chem., 125, 167-188.
-
(1994)
Monatsh. Chem.
, vol.125
, pp. 167-188
-
-
Hofacker, I.L.1
Fontana, W.2
Stadler, P.F.3
Bonhoeffer, S.4
Tacker, M.5
Schuster, P.6
-
4
-
-
0034070995
-
Calculating nucleic acid secondary structure
-
Zuker,M. (2000) Calculating nucleic acid secondary structure. Curr. Opin. Struct. Biol., 10, 303-310.
-
(2000)
Curr. Opin. Struct. Biol.
, vol.10
, pp. 303-310
-
-
Zuker, M.1
-
5
-
-
0034021259
-
RNA folding at elementary step resolution
-
Flamm,C., Fontana,W., Hofacker,J. and Schuster,P. (2000) RNA folding at elementary step resolution. RNA, 6, 325-338.
-
(2000)
RNA
, vol.6
, pp. 325-338
-
-
Flamm, C.1
Fontana, W.2
Hofacker, J.3
Schuster, P.4
-
6
-
-
0034612331
-
Modeling RNA folding paths with pseudoknots: Application to hepatitis delta virus ribozyme
-
Isambert,H. and Siggia,E. (2000) Modeling RNA folding paths with pseudoknots: application to hepatitis delta virus ribozyme. Proc. Natl Acad. Sci. USA, 97, 6515-6520.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 6515-6520
-
-
Isambert, H.1
Siggia, E.2
-
7
-
-
0002538639
-
RNA in silico: The computational biology of RNA secondary structures
-
Flamm,C., Hofacker,J. and Stadler,P. (1999) RNA in silico: the computational biology of RNA secondary structures. Adv. Complex Syst., 2, 65-90.
-
(1999)
Adv. Complex Syst.
, vol.2
, pp. 65-90
-
-
Flamm, C.1
Hofacker, J.2
Stadler, P.3
-
8
-
-
0036340121
-
Barrier trees of degenerate landscape
-
Flamm,C., Hofacker,J., Stadler,P. and Wolfinger,M. (2002) Barrier trees of degenerate landscape. Z. Phys. Chem., 216, 155-173.
-
(2002)
Z. Phys. Chem.
, vol.216
, pp. 155-173
-
-
Flamm, C.1
Hofacker, J.2
Stadler, P.3
Wolfinger, M.4
-
9
-
-
0024477261
-
On finding all suboptimal foldings of an RNA molecule
-
Zuker,M. (1989) On finding all suboptimal foldings of an RNA molecule. Science, 244, 48-52.
-
(1989)
Science
, vol.244
, pp. 48-52
-
-
Zuker, M.1
-
10
-
-
0033080745
-
Complete suboptimal folding of RNA and the stability of secondary structures
-
Wuchty,S., Fontana,W., Hofacker,J. and Schuster,P. (1999) Complete suboptimal folding of RNA and the stability of secondary structures. Biopolymers, 49, 145-165.
-
(1999)
Biopolymers
, vol.49
, pp. 145-165
-
-
Wuchty, S.1
Fontana, W.2
Hofacker, J.3
Schuster, P.4
-
11
-
-
0035797353
-
Small-world networks and the conformation space of a short lattice polymer chain
-
Scala,A., Amaral,L. and Barthélémy,M. (2001) Small-world networks and the conformation space of a short lattice polymer chain. Europhys. Lett., 55, 594-599.
-
(2001)
Europhys. Lett.
, vol.55
, pp. 594-599
-
-
Scala, A.1
Amaral, L.2
Barthélémy, M.3
-
12
-
-
0032482432
-
Collective dynamics of 'small-world' networks
-
Watts,D. and Strogatz,S. (1998) Collective dynamics of 'small-world' networks. Nature, 393, 440-442.
-
(1998)
Nature
, vol.393
, pp. 440-442
-
-
Watts, D.1
Strogatz, S.2
-
13
-
-
0035823264
-
The small world inside large metabolic networks
-
Wagner,A. and Fell,D. (2001) The small world inside large metabolic networks. Proc. R. Soc. Lond. B Biol. Sci., 268, 1803-1810.
-
(2001)
Proc. R. Soc. Lond. B Biol. Sci.
, vol.268
, pp. 1803-1810
-
-
Wagner, A.1
Fell, D.2
-
14
-
-
0033764169
-
The small world of metabolism
-
Fell,D. and Wagner,A. (2000) The small world of metabolism. Nat. Biotechnol., 189, 1121-1122.
-
(2000)
Nat. Biotechnol.
, vol.189
, pp. 1121-1122
-
-
Fell, D.1
Wagner, A.2
-
15
-
-
0035895239
-
The structure of scientific collaboration networks
-
Newman,M. (2001) The structure of scientific collaboration networks. Proc. Natl Acad. Sci. USA, 98, 404-409.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 404-409
-
-
Newman, M.1
-
16
-
-
0034887573
-
Scale-free behavior in protein domain networks
-
Wuchty,S. (2001) Scale-free behavior in protein domain networks. Mol. Biol. Evol., 18, 1694-1702.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1694-1702
-
-
Wuchty, S.1
-
17
-
-
0002687371
-
The small-world problem
-
Milgram,S. (1967) The small-world problem. Psychol. Today, 2, 60-67.
-
(1967)
Psychol. Today
, vol.2
, pp. 60-67
-
-
Milgram, S.1
-
18
-
-
0004219960
-
-
Academic Press Inc., London-New York
-
Bollobás,B. (1985) Random Graphs. Academic Press Inc., London-New York.
-
(1985)
Random Graphs
-
-
Bollobás, B.1
-
19
-
-
0038740915
-
Small-world networks: Evidence for a crossover picture
-
Barthélémy,M. and Amaral,L. (1999) Small-world networks: evidence for a crossover picture. Phys. Rev. Lett., 82, 3180-3183.
-
(1999)
Phys. Rev. Lett.
, vol.82
, pp. 3180-3183
-
-
Barthélémy, M.1
Amaral, L.2
-
21
-
-
0028196714
-
From sequences to shapes and back: A case study in RNA secondary structures
-
Schuster,P., Fontana,W., Stadler,P. and Hofacker,I. (1994) From sequences to shapes and back: a case study in RNA secondary structures. Proc. R. Soc. Lond. B Biol. Sci., 255, 279-284.
-
(1994)
Proc. R. Soc. Lond. B Biol. Sci.
, vol.255
, pp. 279-284
-
-
Schuster, P.1
Fontana, W.2
Stadler, P.3
Hofacker, I.4
-
23
-
-
18744421488
-
Mean-field theory for scale-free random networks
-
Barabási,A., Albert,R. and Jeong,H. (1999) Mean-field theory for scale-free random networks. Physica A, 272, 173-187.
-
(1999)
Physica A
, vol.272
, pp. 173-187
-
-
Barabási, A.1
Albert, R.2
Jeong, H.3
-
24
-
-
0038483826
-
Emergence of scaling in random networks
-
Barabási,A. and Albert,R. (1999) Emergence of scaling in random networks. Science, 286, 509-512.
-
(1999)
Science
, vol.286
, pp. 509-512
-
-
Barabási, A.1
Albert, R.2
-
25
-
-
0037199968
-
Hierarchical organization of modularity in metabolic networks
-
Ravasz,E., Somera,A., Mongru,D., Oltvai,Z. and Barabai,A. (2002) Hierarchical organization of modularity in metabolic networks. Science, 297, 1551-1555.
-
(2002)
Science
, vol.297
, pp. 1551-1555
-
-
Ravasz, E.1
Somera, A.2
Mongru, D.3
Oltvai, Z.4
Barabai, A.5
-
28
-
-
0002226683
-
PAJEK - Program for large network analysis
-
Batagelj,V. and Mrvar,A. (1998) PAJEK - Program for large network analysis. Connections, 21, 47-57.
-
(1998)
Connections
, vol.21
, pp. 47-57
-
-
Batagelj, V.1
Mrvar, A.2
-
29
-
-
0031804156
-
Compilation of tRNA sequences and sequences of tRNA genes
-
Sprinzl,M., Horn,C., Brown,M., Ioudovitch,A. and Steinberg,S. (1998) Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res., 26, 148-153.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 148-153
-
-
Sprinzl, M.1
Horn, C.2
Brown, M.3
Ioudovitch, A.4
Steinberg, S.5
-
30
-
-
37049089723
-
Thermodynamic properties of transfer RNA: A computational study
-
Higgs,P.G. (1995) Thermodynamic properties of transfer RNA: a computational study. J. Chem. Soc. Faraday Transactions, 91, 2531-2540.
-
(1995)
J. Chem. Soc. Faraday Transactions
, vol.91
, pp. 2531-2540
-
-
Higgs, P.G.1
|