Vibrational Raman optical activity of proteins, nucleic acids, and viruses

Methods

Volumn 29, Issue 2, 2003, Pages 196-209

  Blanch, Ewan W ^a   Hecht, Lutz ^a   Barron, Laurence D ^a  

^a UNIVERSITY OF GLASGOW   (United Kingdom)

Author keywords

Chirality; Conformational disease; Fold recognition; Nucleic acid structure; Protein conformation; Raman optical activity; Vibrational spectroscopy; Virus structure

Indexed keywords

NUCLEIC ACID; PROTEIN;

ARTICLE; CHEMICAL STRUCTURE; CHIRALITY; CONTROLLED STUDY; DENATURATION; MEASUREMENT; MEDICAL INFORMATION; MEDICAL RESEARCH; MOLECULAR BIOLOGY; NONHUMAN; POLARIZATION; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; SPECTROSCOPY; THEORETICAL STUDY; VIBRATIONAL RAMAN OPTICAL ACTIVITY; VIRUS;

NUCLEIC ACID CONFORMATION; NUCLEIC ACIDS; OPTICS; PROTEIN FOLDING; PROTEINS; SENSITIVITY AND SPECIFICITY; SPECTRUM ANALYSIS, RAMAN; VIBRATION; VIRUSES;

CHAETODON;

EID: 0037329058     PISSN: 10462023     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1046-2023(02)00310-9     Document Type: Article

References (69)

1. Carey P.R. Biochemical Applications of Raman and Resonance Raman Spectroscopies. 1982;Academic Press, New York.
2. Diem M. Modern Vibrational Spectroscopy. 1993;Wiley, New York.
3. Miura T., Thomas G.J. Jr. Biswas B.B., Roy S. Subcellular Biochemistry Proteins: Structure Function and Engineering. 24:1995;55-99 Plenum Press, New York.
4. Keiderling T.A. Fasman G.D. Circular Dichroism and the Conformational Analysis of Biomolecules. 1996;555-598 Plenum Press, New York.
5. Polavarapu P.L. Vibrational Spectra: Principles and Applications with Emphasis on Optical Activity. 1998;Elsevier, Amsterdam.
6. Thomas G.J. Jr. Annu. Rev. Biophys. Biomol. Struct. 28:1999;1-27.
7. Keiderling T.A. Berova N., Nakanishi K., Woody R.W. Circular Dichroism: Principles and Applications. second ed. 2000;621-666 Wiley, New York.
8. B.R. Singh (Ed.), Infrared Analysis of Peptides and Proteins: Principles and Applications, in: ACS Symposium Series, vol. 750, American Chemical Society, Washington DC, 2000.
9. Nafie L.A., Freedman T.B. Berova N., Nakanishi K., Woody R.W. Circular Dichroism Principles and Applications. second ed. 2000;97-131 Wiley, New York.
10. Barron L.D., Hecht L. Berova N., Nakanishi K., Woody R.W. Circular Dichroism. Principles and Applications. second ed. 2000;667-701 Wiley, New York.
11. Barron L.D., Bogaard M.P., Buckingham A.D. J. Am. Chem. Soc. 95:1973;603-605.
12. Barron L.D., Hecht L., Blanch E.W., Bell A.F. Prog. Biophys. Mol. Biol. 73:2000;1-49.
13. Atkins P.W., Barron L.D. Mol. Phys. 16:1969;453-466.
14. Barron L.D., Buckingham A.D. Mol. Phys. 20:1971;1111-1119.
15. Buckingham A.D. Adv. Chem. Phys. 12:1967;107-142.
16. Barron L.D. Molecular Light Scattering and Optical Activity. 1982;Cambridge University Press, Cambridge.
17. Barron L.D., Buckingham A.D. J. Am. Chem. Soc. 96:1974;4769-4773.
18. Hecht L., Barron L.D., Blanch E.W., Bell A.F., Day L.A. J. Raman Spectrosc. 30:1999;815-825.
19. Hug W., Hangartner G. J. Raman Spectrosc. 30:1999;841-852.
20. Tu A.T. Adv. Spectrosc. 13:1986;47-112.
21. Ford S.J., Wen Z.Q., Hecht L., Barron L.D. Biopolymers. 34:1994;303-313.
22. Blanch E.W., Morozova-Roche L.A., Hecht L., Noppe W., Barron L.D. Biopolymers. 57:2000;235-248.
23. L.D. Barron, E.W. Blanch, A.F. Bell, C.D. Syme, L. Hecht, L.A. Day, It is my book, in: Hicks, J.M. (Ed.), Chirality: Physical Chemistry. ACS Symposium Series, vol. 810, American Chemical Society, Washington DC, 2002, pp. 34-49.
24. Blanch E.W., Bell A.F., Hecht L., Day L.A., Barron L.D. J. Mol. Biol. 290:1999;1-7. doi:10.1006/jmbi.1999.2871.
25. Lee S.-H., Krimm S. J. Raman Spectrosc. 29:1998;73-80.
26. Tsuboi M., Suzuki M., Overman S.A., Thomas G.J. Jr. Biochemistry. 39:2000;2677-2684.
27. Hanson P., Anderson D.J., Martinez G., Millhauser G., Formaggio F., Crisma M., Toniolo C., Vita C. Mol. Phys. 95:1998;957-966.
28. Bolin K.A., Millhauser G.L. Accs. Chem. Res. 32:1999;1027-1033.
29. Wilson G., Hecht L., Barron L.D. J. Chem. Soc. Faraday Trans. 92:1996;1503-1510.
30. Adzhubei A.A., Sternberg M.J.E. J. Mol. Biol. 229:1993;472-493. doi:10.1006/jmbi.1993.1047.
31. Stapley B.T., Creamer T.P. Prot. Sci. 8:1999;587-595.
32. Miura T., Takeuchi H., Harada I. J. Raman Spectrosc. 20:1989;667-671.
33. Blanch E.W., Hecht L., Day L.A., Pederson D.M., Barron L.D. J. Am. Chem. Soc. 123:2001;4863-4864.
34. Blanch E.W., Robinson D.J., Hecht L., Syme C.D., Nielsen K., Barron L.D. J. Gen. Virol. 83:2002;241-246.
35. Barron L.D., Blanch E.W., Hecht L. Adv. Prot. Chem. 62:2002;51-90.
36. Ptitsyn O.B. Adv. Prot. Chem. 47:1995;83-229.
37. Arai M., Kuwajima K. Adv. Prot. Chem. 53:2000;209-282.
38. Haezebrouck P., Joniau M., vanDael H., Hooke S.D., Woodruff N.D., Dobson C.M. J. Mol. Biol. 246:1995;382-387. doi:10.1006/jmbi.1994.0093.
39. Morozova-Roche L.A., Zurdo J., Spencer A., Noppe W., Receveur V., Archer D.B., Joniau M., Dobson C.M. J. Struct. Biol. 130:2000;339-351. doi:10.1006/jsbi.2000.4264.
40. Blanch E.W., Morozova-Roche L.A., Cochran D.A.E., Doig A.J., Hecht L., Barron L.D. J. Mol. Biol. 301:2000;553-563. doi:10.1006/jmbi.2000.3981.
41. Krebs M.R.H., Wilkins D.K., Chung E.W., Pitkeathly M.C., Chamberlain A.K., Zurdo J., Robinson C.V., Dobson C.M. J. Mol. Biol. 300:2000;541-549. doi:10.1006/jmbi.2000.3862.
42. Syme C.D., Blanch E.W., Holt C., Jakes R., Goedert M., Hecht L., Barron L.D. Eur. J. Biochem. 269:2002;148-156.
43. Holt C., Sawyer L. J. Chem. Soc. Faraday Trans. 89:1993;2683-2692.
44. Carrell R.W., Lomas D.A. Lancet. 350:1997;134-138.
45. Dobson C.M., Ellis R.J., Fersht A.R. Philos. Trans. R. Soc. Lond. B. 356:2001;127-227.
46. Sekharudu Y.C., Sundaralingham M. Westhof E. Water and Biological Macromolecules. 1993;148-162 CRC Press, Boca Raton, FL.
47. Siligardi G., Drake A.F. Biopolymers. 37:1995;281-292.
48. Tiffany M.L., Krimm S. Biopolymers. 6:1968;1379-1382.
49. Woody R.W. Adv. Biophys. Chem. 2:1992;37-79.
50. Dukor R.K., Keiderling T.A. Biopolymers. 31:1991;1747-1761.
51. Keiderling T.A., Silva R.A.G.D., Yoder G., Dukor R.K. Bioorg. Med. Chem. 7:1999;133-141.
52. Sreerama N., Woody R.W. Biochemistry. 33:1994;10022-10025.
53. Bell A.F., Hecht L., Barron L.D. J. Chem. Soc. Faraday Trans. 93:1997;553-562.
54. Bell A.F., Hecht L., Barron L.D. J. Am. Chem. Soc. 119:1997;6006-6013.
55. Bell A.F., Hecht L., Barron L.D. Biospectroscopy. 4:1998;107-111.
56. Bell A.F., Hecht L., Barron L.D. J. Raman Spectrosc. 30:1999;651-656.
57. Bell A.F., Hecht L., Barron L.D. J. Am. Chem. Soc. 120:1998;5820-5821.
58. Saenger W. Principles of Nucleic Acid Structure. 1984;Springer, New York.
59. Chiu W., Burnett R.M., Garcia R.L., Eds Structural Virology of Viruses. 1997;Oxford University Press, New York.
60. Marvin D.A. Curr. Opin. Struct. Biol. 8:1998;150-158.
61. Pederson D.M., Welsh L.C., Marvin D.A., Sampson M., Perham R.N., Yu M., Slater M.R. J. Mol. Biol. 309:2001;401-421. doi:10.1006/jmbi.2001.4685.
62. Blanch E.W., Robinson D.J., Hecht L., Barron L.D. J. Gen. Virol. 82:2001;1499-1502.
63. Klug A. Philos. Trans. R. Soc. Lond. B. 354:1999;531-535.
64. Stubbs G. Philos. Trans. R. Soc. Lond. B. 354:1999;551-557.
65. Larson S.B., Day J., Greenwood A., McPherson A. J. Mol. Biol. 277:1998;37-59. doi:10.1006/jmbi.1997.1570.
66. Valegård K., Liljas L., Fridborg K., Unge T. Nature. 345:1990;36-41.
67. Blanch E.W., Hecht L., Syme C.D., Volpetti V., Lomonossoff G.P., Barron L.D. J. Gen. Virol. 83:2002;2593-2600.
68. Lomonossoff G.P., Johnson J.E. Prog. Biophys. Mol. Biol. 55:1991;107-137.
69. Lin T., Chen Z., Usha R., Stauffacher C.V., Dai J.-B., Schmidt T., Johnson J.E. Virology. 265:1999;20-34. doi:10.1006/viro.1999.0038.