메뉴 건너뛰기




Volumn 31, Issue 3, 2003, Pages 1038-1044

Synapsis and strand exchange in the resolution and DNA inversion reactions catalysed by the β recombinase

Author keywords

[No Author keywords available]

Indexed keywords

BETA RECOMBINASE; DNA; NUCLEOTIDYLTRANSFERASE; PROTEIN HBSU; RECOMBINASE; RESOLVASE; UNCLASSIFIED DRUG;

EID: 0037324355     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg166     Document Type: Review
Times cited : (19)

References (36)
  • 1
    • 0030628279 scopus 로고    scopus 로고
    • Polynucleotidyl transfer reactions in site-specific DNA recombination
    • Mizuuchi,K. (1997) Polynucleotidyl transfer reactions in site-specific DNA recombination. Genes Cells, 2, 1-12.
    • (1997) Genes Cells , vol.2 , pp. 1-12
    • Mizuuchi, K.1
  • 2
    • 0000078911 scopus 로고    scopus 로고
    • The HU and IHF proteins: Accessory factors for complex protein-DNA assemblies
    • Neidhardt,F.D. (ed.), 2nd Edn. American Society for Microbiology, Washington, DC
    • Nash,H.A. (1996) The HU and IHF proteins: accessory factors for complex protein-DNA assemblies. In Neidhardt,F.D. (ed.), Escherichia coli and Salmolella. Cellular and Molecular Biology, 2nd Edn. American Society for Microbiology, Washington, DC, pp. 2363-2376.
    • (1996) Escherichia Coli and Salmolella. Cellular and Molecular Biology , pp. 2363-2376
    • Nash, H.A.1
  • 3
    • 0030721538 scopus 로고    scopus 로고
    • Transposition and site-specific recombination: Adapting DNA cut-and-paste mechanism to a variety of genetic rearrangements
    • Hallet,B. and Sherratt,D.J. (1997) Transposition and site-specific recombination: adapting DNA cut-and-paste mechanism to a variety of genetic rearrangements. FEMS Microbiol. Rev., 21, 157-178.
    • (1997) FEMS Microbiol. Rev. , vol.21 , pp. 157-178
    • Hallet, B.1    Sherratt, D.J.2
  • 4
    • 85158006363 scopus 로고    scopus 로고
    • The movement of Tn3-like elements: Transposition and resolution
    • Craig,N., Craigie,R., Gellert,M. and Lambowitz,A. (eds), ASM Press, Washington, DC
    • Grindley,N.D.F. (2002) The movement of Tn3-like elements: transposition and resolution. In Craig,N., Craigie,R., Gellert,M. and Lambowitz,A. (eds), Mobile DNA II. ASM Press, Washington, DC, pp. 272-302.
    • (2002) Mobile DNA II , pp. 272-302
    • Grindley, N.D.F.1
  • 5
    • 0036229438 scopus 로고    scopus 로고
    • Diversity in the serine recombinases
    • Smith,M.C.M. and Thorpe,H. (2002) Diversity in the serine recombinases. Mol. Microbiol., 44, 299-307.
    • (2002) Mol. Microbiol. , vol.44 , pp. 299-307
    • Smith, M.C.M.1    Thorpe, H.2
  • 6
    • 0029664417 scopus 로고    scopus 로고
    • Rate and selectively of synapsis of res recombination sites by Tn3 resolvase
    • Watson,M.A., Boocock,M.R. and Stark,W.M. (1996) Rate and selectively of synapsis of res recombination sites by Tn3 resolvase. J. Mol. Biol., 257, 317-329.
    • (1996) J. Mol. Biol. , vol.257 , pp. 317-329
    • Watson, M.A.1    Boocock, M.R.2    Stark, W.M.3
  • 7
    • 0001037223 scopus 로고
    • Topological selectivity in site-specific recombination
    • Sherratt,D.J. (ed.), Oxford University Press, Oxford, UK
    • Stark,W.M. and Boocock,M.R. (1995) Topological selectivity in site-specific recombination. In Sherratt,D.J. (ed.), Mobile Genetic Elements. Oxford University Press, Oxford, UK, pp. 101-129.
    • (1995) Mobile Genetic Elements , pp. 101-129
    • Stark, W.M.1    Boocock, M.R.2
  • 8
    • 0001731921 scopus 로고
    • Roles of supercoiling DNA structures in DNA transaction
    • Kanaar,R. and Cozzarelli,N.R. (1992) Roles of supercoiling DNA structures in DNA transaction. Curr. Opin. Struct. Biol., 2, 369-379.
    • (1992) Curr. Opin. Struct. Biol. , vol.2 , pp. 369-379
    • Kanaar, R.1    Cozzarelli, N.R.2
  • 9
    • 0030886718 scopus 로고    scopus 로고
    • Stimulation of DNA inversion by FIS: Evidence for enhancer-independent contact with the Gin-gix complex
    • Deufel,A., Hermann,T., Kahmann,R. and Muskhelishvili,G. (1997) Stimulation of DNA inversion by FIS: evidence for enhancer-independent contact with the Gin-gix complex. Nucleic Acids Res., 25, 3832-3839.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3832-3839
    • Deufel, A.1    Hermann, T.2    Kahmann, R.3    Muskhelishvili, G.4
  • 10
    • 0032167803 scopus 로고    scopus 로고
    • Communication between Hin recombinase and Fis regulatory subunits during coordinate activation of Hin-catalyzed site-specific DNA inversion
    • Merickel,S.K., Haykinson,M.J. and Johnson,R.C. (1998) Communication between Hin recombinase and Fis regulatory subunits during coordinate activation of Hin-catalyzed site-specific DNA inversion. Genes Dev., 12, 2803-2816.
    • (1998) Genes Dev. , vol.12 , pp. 2803-2816
    • Merickel, S.K.1    Haykinson, M.J.2    Johnson, R.C.3
  • 11
    • 0024195388 scopus 로고
    • Isolation and characterization of unusual Gin mutants
    • Klippel,A., Cloppenborg,K. and Kahmann,R. (1988) Isolation and characterization of unusual Gin mutants. EMBO J., 7, 3983-3989.
    • (1988) EMBO J. , vol.7 , pp. 3983-3989
    • Klippel, A.1    Cloppenborg, K.2    Kahmann, R.3
  • 12
    • 0033105367 scopus 로고    scopus 로고
    • Mutants of Tn3 resolvase which do not require accessory binding sites for recombination activity
    • Arnold,P.H., Blake,D.G., Grindley,N.D., Boocock,M.R. and Stark,W.M. (1999) Mutants of Tn3 resolvase which do not require accessory binding sites for recombination activity. EMBO J., 18, 1407-1414.
    • (1999) EMBO J. , vol.18 , pp. 1407-1414
    • Arnold, P.H.1    Blake, D.G.2    Grindley, N.D.3    Boocock, M.R.4    Stark, W.M.5
  • 14
    • 0028341724 scopus 로고
    • A novel site-specific recombinase encoded by the Streptococcus pyogenes plasmid pSM19035
    • Rojo,F. and Alonso,J.C. (1994) A novel site-specific recombinase encoded by the Streptococcus pyogenes plasmid pSM19035. J. Mol. Biol., 238, 159-172
    • (1994) J. Mol. Biol. , vol.238 , pp. 159-172
    • Rojo, F.1    Alonso, J.C.2
  • 15
    • 0036096589 scopus 로고    scopus 로고
    • Sin recombinase from Staphylococcus aureus: Synaptic complex architecture and transposon targeting
    • Rowland,S., Stark,W.M. and Boocock,M.R. (2002) Sin recombinase from Staphylococcus aureus: synaptic complex architecture and transposon targeting. Mol. Microbiol., 44, 607-619.
    • (2002) Mol. Microbiol. , vol.44 , pp. 607-619
    • Rowland, S.1    Stark, W.M.2    Boocock, M.R.3
  • 16
    • 0032577459 scopus 로고    scopus 로고
    • β recombinase catalyzes inversion and resolution between two inversely oriented target sites on a supercoiled DNA substrate and only inversion on relaxed or linear substrates
    • Canosa,I., Lurz,R., Rojo,F. and Alonso,J.C. (1998) β recombinase catalyzes inversion and resolution between two inversely oriented target sites on a supercoiled DNA substrate and only inversion on relaxed or linear substrates. J. Biol. Chem., 273, 13886-13891.
    • (1998) J. Biol. Chem. , vol.273 , pp. 13886-13891
    • Canosa, I.1    Lurz, R.2    Rojo, F.3    Alonso, J.C.4
  • 17
    • 0027137890 scopus 로고
    • Characterization of the effectors required for stable inheritance of Streptococcus pyogenes pSM19035-derived plasmids in Bacillus subtilis
    • Ceglowski,P., Boitsov,A., Karamyan,N., Chai,S. and Alonso,J.C. (1993) Characterization of the effectors required for stable inheritance of Streptococcus pyogenes pSM19035-derived plasmids in Bacillus subtilis. Mol. Gen. Genet., 241, 579-585.
    • (1993) Mol. Gen. Genet. , vol.241 , pp. 579-585
    • Ceglowski, P.1    Boitsov, A.2    Karamyan, N.3    Chai, S.4    Alonso, J.C.5
  • 18
    • 0030586719 scopus 로고    scopus 로고
    • Site-specific recombination in Gram-positive broad-host-range theta replicating plasmids
    • Alonso,J.C., Ayora,S., Canosa,I., Weise,F. and Rojo,F. (1996) Site-specific recombination in Gram-positive broad-host-range theta replicating plasmids. FEMS Microbiol. Lett., 142, 1-10.
    • (1996) FEMS Microbiol. Lett. , vol.142 , pp. 1-10
    • Alonso, J.C.1    Ayora, S.2    Canosa, I.3    Weise, F.4    Rojo, F.5
  • 19
    • 0028834152 scopus 로고
    • The Bacillus subtilis histone-like protein Hbsu is required for DNA resolution and DNA inversion mediated by the β recombinase of plasmid pSM19035
    • Alonso,J.C., Weise,F. and Rojo,F. (1995) The Bacillus subtilis histone-like protein Hbsu is required for DNA resolution and DNA inversion mediated by the β recombinase of plasmid pSM19035. J. Biol. Chem., 270, 2938-2945.
    • (1995) J. Biol. Chem. , vol.270 , pp. 2938-2945
    • Alonso, J.C.1    Weise, F.2    Rojo, F.3
  • 20
    • 0029597815 scopus 로고
    • The role of the chromatin-associated protein in β-mediated DNA recombination is to facilitate the joining of distant recombination sites
    • Alonso,J.C., Gutiérrez,C. and Rojo,F. (1995) The role of the chromatin-associated protein in β-mediated DNA recombination is to facilitate the joining of distant recombination sites. Mol. Microbiol., 18, 471-478.
    • (1995) Mol. Microbiol. , vol.18 , pp. 471-478
    • Alonso, J.C.1    Gutiérrez, C.2    Rojo, F.3
  • 21
    • 0037129932 scopus 로고    scopus 로고
    • Plant chromosomal HMGB proteins efficiently promote the bacterial site-specific β-mediated recombination in vitro and in vivo
    • Stemmer,C., Fernández,S., López,G., Alonso,J.C. and Grasser,K.D. (2002) Plant chromosomal HMGB proteins efficiently promote the bacterial site-specific β-mediated recombination in vitro and in vivo. Biochemistry, 41, 7763-7770.
    • (2002) Biochemistry , vol.41 , pp. 7763-7770
    • Stemmer, C.1    Fernández, S.2    López, G.3    Alonso, J.C.4    Grasser, K.D.5
  • 22
    • 0029123809 scopus 로고
    • The β recombinase of plasmid pSM19035 binds to two adjacent sites making different contacts at each of them
    • Rojo,F. and Alonso,J.C. (1995) The β recombinase of plasmid pSM19035 binds to two adjacent sites making different contacts at each of them. Nucleic Acids Res., 23, 3181-3188.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 3181-3188
    • Rojo, F.1    Alonso, J.C.2
  • 23
    • 0029905345 scopus 로고    scopus 로고
    • Site-specific recombination by the β protein from the streptococcal plasmid pSM19035: Minimal recombination sequences and crossing over site
    • Canosa,I., Rojo,F. and Alonso,J.C. (1996) Site-specific recombination by the β protein from the streptococcal plasmid pSM19035: minimal recombination sequences and crossing over site. Nucleic Acids Res., 24, 2712-2717.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 2712-2717
    • Canosa, I.1    Rojo, F.2    Alonso, J.C.3
  • 24
    • 0030764847 scopus 로고    scopus 로고
    • Mutational analysis of a site-specific recombinase: Characterization of the catalytic and dimerization domains of the β recombinase of pSM19035
    • Canosa,I., Ayora,S., Rojo,F. and Alonso,J.C. (1997) Mutational analysis of a site-specific recombinase: characterization of the catalytic and dimerization domains of the β recombinase of pSM19035. Mol. Gen. Genet., 255, 467-476.
    • (1997) Mol. Gen. Genet. , vol.255 , pp. 467-476
    • Canosa, I.1    Ayora, S.2    Rojo, F.3    Alonso, J.C.4
  • 25
    • 0013433570 scopus 로고    scopus 로고
    • Caracterización del proceso de recombinación específica de sitio catalizado por la recombinasa β del plásmido pSM19035
    • PhD thesis, Universidad Autónoma de Madrid, Madrid, Spain
    • Canosa,I. (1998) Caracterización del proceso de recombinación específica de sitio catalizado por la recombinasa β del plásmido pSM19035, PhD thesis, Universidad Autónoma de Madrid, Madrid, Spain.
    • (1998)
    • Canosa, I.1
  • 26
    • 0027178850 scopus 로고
    • Purification of the β product encoded by the Streptococcus pyogenes plasmid pSM19035. A putative DNA recombinase required to resolve plasmid oligomers
    • Rojo,F., Weise,F. and Alonso,J.C. (1993) Purification of the β product encoded by the Streptococcus pyogenes plasmid pSM19035. A putative DNA recombinase required to resolve plasmid oligomers. FEBS Lett., 328, 169-173
    • (1993) FEBS Lett. , vol.328 , pp. 169-173
    • Rojo, F.1    Weise, F.2    Alonso, J.C.3
  • 27
    • 0024364817 scopus 로고
    • Site-specific recombination by Tn3 resolvase: Topological changes in the forward and reverse reactions
    • Stark,W.M., Sherratt,D.J. and Boocock,M.R. (1989) Site-specific recombination by Tn3 resolvase: topological changes in the forward and reverse reactions. Cell, 58, 779-790.
    • (1989) Cell , vol.58 , pp. 779-790
    • Stark, W.M.1    Sherratt, D.J.2    Boocock, M.R.3
  • 28
    • 0025946533 scopus 로고
    • Resolvase-catalysed reactions between res sites differing in the central dinucleotide of subsite I
    • Stark,W.M., Gindley,N.D.F., Hatfull,G.F. and Boocock,M.R. (1991) Resolvase-catalysed reactions between res sites differing in the central dinucleotide of subsite I. EMBO J., 10, 3541-3548.
    • (1991) EMBO J. , vol.10 , pp. 3541-3548
    • Stark, W.M.1    Gindley, N.D.F.2    Hatfull, G.F.3    Boocock, M.R.4
  • 29
    • 0021972652 scopus 로고
    • Discovery of a predicted DNA knot substantiates a model for site-specific recombination
    • Wasserman,S.A., Dungan,J.M. and Cozzarelli,N.R. (1985) Discovery of a predicted DNA knot substantiates a model for site-specific recombination. Science, 229, 171-174.
    • (1985) Science , vol.229 , pp. 171-174
    • Wasserman, S.A.1    Dungan, J.M.2    Cozzarelli, N.R.3
  • 30
    • 0024024317 scopus 로고
    • Isolation and characterization of the Tn3 resolvase synaptic intermediate
    • Benjamin,H.W. and Cozzarelli,N.R. (1988). Isolation and characterization of the Tn3 resolvase synaptic intermediate. EMBO J., 7, 1897-1905.
    • (1988) EMBO J. , vol.7 , pp. 1897-1905
    • Benjamin, H.W.1    Cozzarelli, N.R.2
  • 31
    • 0025376429 scopus 로고
    • Processive recombination by the phage Mu Gin system: Implications for the mechanisms of DNA strand exchange, DNA site alignment and enhancer action
    • Kanaar,R., Klippel,A., Shekhtman,E., Dungan,J.M., Kahmann,R. and Cozzarelli,N.R. (1990) Processive recombination by the phage Mu Gin system: implications for the mechanisms of DNA strand exchange, DNA site alignment and enhancer action. Cell, 62, 353-366.
    • (1990) Cell , vol.62 , pp. 353-366
    • Kanaar, R.1    Klippel, A.2    Shekhtman, E.3    Dungan, J.M.4    Kahmann, R.5    Cozzarelli, N.R.6
  • 33
    • 0028209323 scopus 로고
    • Model for a DNA-mediated synaptic complex suggested by crystal packing of the γδ resolvase subunits
    • Rice,P.A. and Steitz,T.A. (1994) Model for a DNA-mediated synaptic complex suggested by crystal packing of the γδ resolvase subunits. EMBO J., 13, 1514-1524.
    • (1994) EMBO J. , vol.13 , pp. 1514-1524
    • Rice, P.A.1    Steitz, T.A.2
  • 34
    • 0034723141 scopus 로고    scopus 로고
    • A DNA-binding domain swap converts the invertase Gin into a resolvase
    • Schneider,F., Schwikardi,M., Muskhelishvili,G. and Dröge,P. (2000) A DNA-binding domain swap converts the invertase Gin into a resolvase. J. Mol. Biol., 295, 767-775.
    • (2000) J. Mol. Biol. , vol.295 , pp. 767-775
    • Schneider, F.1    Schwikardi, M.2    Muskhelishvili, G.3    Dröge, P.4
  • 35
    • 0028151069 scopus 로고
    • Processive recombination by wt Gin and an enhancer-independent mutant. Insight into the mechanisms of recombination selectivity and strand exchange
    • Crisona,N.J., Kanaar,R., Gonzalez,T.N., Zechiedrich,E.L., Klippel,A. and Cozzarelli,N.R. (1994) Processive recombination by wt Gin and an enhancer-independent mutant. Insight into the mechanisms of recombination selectivity and strand exchange. J. Mol. Biol., 243, 437-457.
    • (1994) J. Mol. Biol. , vol.243 , pp. 437-457
    • Crisona, N.J.1    Kanaar, R.2    Gonzalez, T.N.3    Zechiedrich, E.L.4    Klippel, A.5    Cozzarelli, N.R.6
  • 36
    • 0032103269 scopus 로고    scopus 로고
    • Four differently chromatin-associated maize HMG domain proteins modulate DNA structure and act as architectural elements in nucleoprotein complexes
    • Ritt,C., Grimm,R., Fernández,S., Alonso,J.C. and Grasser,K.D. (1998) Four differently chromatin-associated maize HMG domain proteins modulate DNA structure and act as architectural elements in nucleoprotein complexes. Plant J., 14, 623-631.
    • (1998) Plant J. , vol.14 , pp. 623-631
    • Ritt, C.1    Grimm, R.2    Fernández, S.3    Alonso, J.C.4    Grasser, K.D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.