Use of a promoter trap to identify Bacillus cereus genes regulated by tomato seed exudate and a rhizosphere resident, Pseudomonas aureofaciens

Applied and Environmental Microbiology

Volumn 69, Issue 2, 2003, Pages 1197-1205

  Dunn, Anne K ^a   Klimowicz, Amy K ^a   Handelsman, Jo ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; CHROMOSOMES; DNA; FLUORESCENCE; GENETIC ENGINEERING;

SUPERNATANTS;

MICROBIOLOGY;

BACTERIAL DNA; GREEN FLUORESCENT PROTEIN; SIGNAL PEPTIDE;

BACTERIUM; GENE; IDENTIFICATION METHOD;

ARTICLE; BACILLUS CEREUS; BACTERIAL CHROMOSOME; BACTERIAL GENE; DNA LIBRARY; FLUORESCENCE ACTIVATED CELL SORTING; GENE CONTROL; GENE EXPRESSION; GENE IDENTIFICATION; GUSA GENE; LIPA GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLANT SEED; PLASMID; PROMOTER REGION; PSEUDOMONAS AERUGINOSA; RHIZOSPHERE; TOMATO; WILD TYPE;

BACILLUS CEREUS; BACTERIAL PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; LIPOPROTEINS; LYCOPERSICON ESCULENTUM; MEMBRANE PROTEINS; MOLECULAR SEQUENCE DATA; PLANT ROOTS; PROMOTER REGIONS (GENETICS); PSEUDOMONAS; SEEDS; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION, GENETIC;

BACILLUS CEREUS; BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS); LYCOPERSICON ESCULENTUM; NEGIBACTERIA; POSIBACTERIA; PSEUDOMONAS; PSEUDOMONAS AERUGINOSA; PSEUDOMONAS CHLORORAPHIS;

EID: 0037313747     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.69.2.1197-1205.2003     Document Type: Article

References (53)

1. Altschul, S. F., T. L. Madden, A. A. Schäffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
2. Anderson, D., and D. Mills. 1983:Tn5. transposon mutagenesis of 2 phytopathogenic pseudomonas-syringae pathovars. Phytopathology 73:824-826.
3. Beaulieu, C., and F. van Gijsegem. 1990. Identification of plant-inducible genes in Erwinia chrysanthemi 3979. J. Bacteriol. 172:1569-1575.
4. Boucher, C., P. Barberis, A. Trigalet, and D. Demery. 1985. Transposon mutagenesis of Pseudomonas solanacearum: isolation of Tn5 induced avirulent mutants. J. Gen. Microbiol. 131:2449-2457.
5. Chancey, S. T., D. W. Wood, and L. S. Pierson III. 1999. Two-component transcriptional regulation of N-acyl homoserine lactone production in Pseudomonas aureofaciens. Appl. Environ. Microbiol. 65:2294-2299.
6. Dunn, A. K., and J. Handelsman. 1999. A vector for promoter-trapping in Bacillus cereus. Gene 226:297-305.
7. Emmert, E. A. B., J. L. Milner, J. C. Lee, K. L. Pulvermacher, H. A. Olivares, J. Clardy, and J. Handelsman. 1998. Effect of canavanine from alfalfa seed on the population biology of Bacillus cereus. Appl. Environ. Microbiol. 64:4683-4688.
8. Felske, A., A. Wolterink, R. van Lis, and A. D. L. Akkermans. 1998. Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands). Appl. Environ. Microbiol. 64:871-879.
9. Garfinkel, D. J., R. B. Simpson, L. W. Ream, F. F. White, M. P. Gordon, and E. W. Nester. 1981. Genetic analysis of crown gall: fine structure map of the T-DNA by site-directed mutagenesis. Cell 27:143-153.
10. Gilbert, G. S., J. L. Parke, M. K. Clayton, and J. Handelsman. 1993. Effects of an introduced bacterium on bacterial communities on roots. Ecology 74:840-854.
11. Goldstein, A. H., K. Braverman, and N. Osorio. 1999. Evidence for mutualism between a plant growing in a phosphate-limited desert environment and a mineral phosphate solubilizing (MPS) rhizobacterium. FEMS Microbiol. Ecol. 30:295-300.
12. Guérout-Fleury, A., K. Shazand, N. Frandsen, and P. Stragier. 1995. Antibiotic-resistance cassettes for Bacillus subtilis. Gene 167:335-336.
13. Halverson, L. J., M. K. Clayton, and J. Handelsman. 1993. Population biology of Bacillus cereus UW85 in the rhizosphere of field-grown soybeans. Soil Biol. Biochem. 25:485-493.
14. Hanahan, D. 1983. Studies on transformation of Escherichia coli with plasmids. J. Mol. Biol. 165:557-580.
15. Handelsman, J., S. Raffel, E. H. Mester, L. Wunderlich, and C. R. Grau. 1990. Biological control of damping-off of alfalfa seedlings with Bacillus cereus UW85. Appl. Environ. Microbiol. 56:713-718.
16. Jacobs, M., J. B. Anderssen, V. Kotinen, and M. Sarvas. 1993. Bacillus subtilis PrsA is required in vivo as an extracytoplasmic chaperone for secretion of active enzymes synthesized either with or without pro-sequence. Mol. Microbiol. 8:957-966.
17. Jefferson, R. A., and K. J. Wilson. 1988. The GUS gene fusion system, p. B14/1-B14/33. In S. Gelvin, R. Schilperoort, and D. P. Verma (ed.), Plant molecular biology manual. Kluwer Academic Publishers, Dordrecht, The Netherlands.
18. Kelman, A. 1954. The relationship of pathogenicity of Pseudomonas solanacearum to colony appearance on a tetrazolium medium. Phytopathology 44:693-695.
19. Kim, U.-J., B. W. Birren, T. Slepak, V. Mancino, C. Boysen, H.-L. Kang, M. I. Simon, and H. Shizuya. 1996. Construction and characterization of a human bacterial artifical chromosome library. Genomics 34:213-218.
20. Kluyver, A. J. 1956. Pseudomonas aureofaciens nov. spec. and its pigments. J. Bacteriol. 72:406-411.
21. Koller, D., A. M. Mayer, A. Poljakoff-Mayber, and S. Klein. 1962. Seed germination. Annu. Rev. Plant Physiol. 13:437-464.
22. Kotinen, V. P., and M. Sarvas. 1993. The PrsA lipoprotein is essential for protein secretion in Bacillus subtilis and sets a limit for high-level secretion. Mol. Microbiol. 8:727-737.
23. Lindgren, P. B., R. C. Peet, and N. J. Panopoulos. 1986. A gene cluster of Pseudomonas syringae pv. Phaseolicola controls pathogenicity on bean plants and hypersensitivity on non-host plants. J. Bacteriol. 168:512-522.
24. - mutants. Nature 298:485-488.
25. Lugtenberg, B. J. J., L. V. Kravchenko, and M. Simons. 1999. Tomato seed and root exudate sugars: composition, utilization by Pseudomonas biocontrol strains and role in rhizosphere colonization. Environ. Microbiol. 1:439-446.
26. Mahan, M. J., D. M. Heitoff, R. I. Sinsheimer, and D. A. Low. 2000. Assessment of bacterial pathogenesis by analysis of gene expression in the host. Annu. Rev. Genet. 34:139-164.
27. Miller, J. H. 1992. A short course in bacterial genetics. Cold Spring Harbor Laboratory Press. Cold Spring Harbor, N.Y.
28. Milner, J. L., S. J. Raffel, B. J. Lethbridge, and J. Handelsman. 1995. Culture conditions that influence accumulation of zwittermicin A by Bacillus cereus UW85. Appl. Microbiol. Biotechnol. 43:685-691.
29. Osbourn, A. E., C. E. Barber, and M. J. Daniels. 1987. Identification of plant-induced genes of the bacterial pathogen Xanthomonas campestris pathovar campestris using a promoter-probe plasmid. EMBO J. 6:23-28.
30. Palva, A., G. Vigren, M. Simonen, H. Rintala, and P. Laamanen. 1990. Nucleotide sequence of the tetracycline resistance gene of pBC16 from Bacillus cereus. Nucleic Acids Res. 18:1635.
31. Paran, I., I. Goldman, S. D. Tanksley, and D. Zamir. 1995. Recombinant inbred lines for genetic mapping in tomato. Theor. Appl. Genet. 90:542-548.
32. Peters, N. K., J. W. Frost, and S. R. Long. 1986. A plant flavone, luteolin, induces expression of Rhizobium meliloti nodulation genes. Science 233:977-980.
33. Pierson, L. S., III, and E. A. Pierson. 1996. Phenazine antibiotic production in Pseudomonas aureofaciens: role in rhizosphere ecology and pathogen suppression. FEMS Microbiol. Lett. 136:101-108.
34. Raffel, S. J., E. V. Stabb, J. L. Milner, and J. Handelsman. 1996. Genotypic and phenotypic analysis of zwittermicin A-producing strains of Bacillus cereus. Microbiology 142:3425-3436.
35. Rainey, P. B. 1999. Adaptation of Pseudomonas fluorescens to the plant rhizosphere. Environ. Microbiol. 1:243-257.
36. Rainey, P. B., and G. M. Preston. 2000. In vivo expression technology strategies: valuable tools for biotechnology. Curr. Opin. Biotechnol. 11:440-444.
37. Rondon, M. R., S. J. Raffel, R. M. Goodman, and J. Handelsman. 1999. Toward functional genomics in bacteria: analysis of gene expression in Escherichia coli from a bacterial artificial chromosome library of Bacillus cereus. Proc. Natl. Acad. Sci. USA 96:6451-6455.
38. Rudd, K. E., H. J. Sofia, E. V. Koonin, G. Plunkett III, S. Lazar, and P. E. Rouviere. 1995. A new family of peptidyl-prolyl isomerases. Trends Biochem. Sci. 20:12-14.
39. Silo-Suh, L. A., B. J. Lethbridge, S. J. Raffel, H. He, J. Clardy, and J. Handelsman. 1994. Biological activities of two fungistatic antibiotics produced by Bacillus cereus UW85. Appl. Environ. Microbiol. 60:2023-2030.
40. Simon, H. M., K. P. Smith, J. A. Dodsworth, B. Guenthner, J. Handelsman, and R. M. Goodman. 2001. Influence of tomato genotype on growth of inoculated and indigenous bacteria in the spermosphere. Appl. Environ. Microbiol. 67:514-520.
41. Smith, K. P., J. Handelsman, and R. M. Goodman. 1997. Modeling doseresponse relationships in biological control: partitioning host responses to the pathogen and biocontrol agent. Phytopathology 87:720-729.
42. Smith, K. P., J. Handelsman, and R. M. Goodman. 1999. Genetic basis in plants for interactions with disease-suppressive bacteria. Proc. Natl. Acad. Sci. USA 96:4786-4790.
43. Stabb, E. V., L. M. Jacobson, and J. Handelsman. 1994. Zwittermicin A-producing strains of Bacillus cereus from diverse soils. Appl. Environ. Microbiol. 60:4404-4412.
44. Stacey, G., J. Sanjuan, S. Luka, T. Dockendorff, and R. W. Carlson. 1995. Signal exchange in the Bradyrhizobium-soybean symbiosis. Soil. Biol. Biochem. 27:473-483.
45. Stachel, S. E., E. Messens, M. van Montagu, and P. Zambryski. 1985. Identification of the signal molecules produced by wounded plant cells that activate T-DNA transfer in Agrobacterium tumefaciens. Nature 318:624-629.
46. Thomashow, L. S., and D. M. Weller. 1988. Role of a phenazine antibiotic from Pseudomonas fluorescens in biological control of Gaeumannomyces graminis var. tritici. J. Bacteriol. 170:3499-3508.
47. Tjalsma, H., V. P. Kotinen, S. Pragai, H. Wu, R. Meima, G. Benema, S. Bron, M. Sarvas, and J. M. van Dijl. 1999. The role of lipoprotein processing by signal peptidase II in the gram-positive eubacterium Bacillus subtilis. J. Biol. Chem. 274:1698-1707.
48. Valdivia, R. H., and S. Falkow. 1997. Fluorescence-based isolation of bacterial genes expressed within host cells. Science 277:2007-2011.
49. Vanèura, V., and G. Stotzky. 1975. Gaseous and volatile exudates from germinating seeds and seedlings. Can. J. Bot. 54:518-532.
50. van Overbeek, L. S., and J. D. van Elsas. 1995. Root exudate-induced promoter activity in Pseudomonas fluorescens mutants in the wheat rhizosphere. Appl. Environ. Microbiol. 61:890-898.
51. Wilson, K. J., S. Sessitch, J. C. Corbo, K. E. Giller, A. D. L. Akkermans, and R. A. Jefferson. 1995. β-Glucuronidase (GUS) transposons for ecological and genetic studies of rhizobia and other gram-negative bacteria. Microbiology 141:1691-1705.
52. Winans, S. C. 1992. Two-way chemical signaling in Agrobacterium-plant interactions. Microbiol. Rev. 56:12-31.
53. Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.