Chromosomal arm replacement in Streptomyces griseus

Journal of Bacteriology

Volumn 185, Issue 3, 2003, Pages 1120-1124

  Uchida, Tetsuya ^a   Miyawaki, Mariko ^a   Kinashi, Haruyasu ^a  

^a HIROSHIMA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

LIPOPROTEIN; RECOMBINANT DNA;

ARTICLE; CHROMOSOME ABERRATION; CHROMOSOME ARM; CHROMOSOME TRANSLOCATION; DELETION MUTANT; DNA RECOMBINATION; DNA REPAIR; GENE LOCATION; GENETIC RECOMBINATION; HOMOLOGOUS RECOMBINATION; LONG TERMINAL REPEAT; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; RESTRICTION MAPPING; SEQUENCE ANALYSIS; STRAIN DIFFERENCE; STREPTOMYCES GRISEUS; TELOMERE; ULTRAVIOLET RADIATION;

BASE SEQUENCE; CHROMOSOME DELETION; CHROMOSOMES, BACTERIAL; DNA REPAIR; INVERSION, CHROMOSOME; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; STREPTOMYCES GRISEUS; TERMINAL REPEAT SEQUENCES;

ACTINOBACTERIA (CLASS); PROKARYOTA; STREPTOMYCES; STREPTOMYCES GRISEUS; UNCULTURED ACTINOMYCETE;

EID: 0037309131     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.185.3.1120-1124.2003     Document Type: Article

References (22)

1. Bentley, S. D., K. F. Chater, A. M. Cerdeno-Tarraga, G. L. Challis, N. R. Thomson, K. D. James, D. E. Harris, M. A. Quail, H. Kieser, D. Harper, A. Bateman, S. Brown, G. Chandra, C. W. Chen, M. Collins, A. Cronin, A. Fraser, A. Goble, J. Hidalgo, T. Hornsby, S. Howarth, C. H. Huang, T. Kieser, L. Larke, L. Murphy, K. Oliver, S. O'Neil, E. Rabbinowitsch, M. A. Ralandream, K. Rutherford, S. Rutter, K. Seeger, D. Saunders, S. Sharp, R. Squares, S. Squares, K. Taylor, T. Warren, A. Wietzorrek, J. Woodward, B. G. Barrell, J. Parkhill, and D. A. Hopwood. 2002. Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Nature 417:141-147.
2. Chu, G., D. Vollrath, and R. W. Davis. 1986. Separation of large DNA molecules by contour-clamped homogeneous electric fields. Science 234:1582-1585.
3. Fischer, G., T. Wenner, B. Decaris, and P. Leblond. 1998. Chromosomal arm replacement generates a high level of intraspecific polymorphism in the terminal inverted repeats of the linear chromosomal DNA of Streptomyces ambofaciens. Proc. Natl. Acad. Sci. USA 95:14296-14301.
4. Goshi, K., T. Uchida, A. Lezhava, M. Yamasaki, K. Hiratsu, H. Shinkawa, and H. Kinashi. 2002. Cloning and analysis of the telomere and terminal inverted repeat of the linear chromosome of Streptomyces griseus. J. Bacteriol. 184:3411-3415.
5. Kameoka, D., A. Lezhava, H. Zenitani, K. Hiratsu, M. Kawamoto, K. Goshi, K. Inada, H. Shinkawa, and H. Kinashi. 1999. Analysis of fusion junctions of circularized chromosomes in Streptomyces griseus. J. Bacteriol. 181:5711-5717.
6. Kinashi, H. 1994. Linear plasmids from actinomycetes. Actinomycetologica 8:87-96.
7. Leblond, P., and B. Decaris. 1994. New insights into the genetic instability of Streptomyces. FEMS Microbiol. Lett. 123:225-232.
8. Leblond, P., G. Fischer, F.-X. Francou, F. Berger, M. Guerineau, and B. Decaris. 1996. The unstable region of Streptomyces ambofaciens includes 210-kb terminal inverted repeats flanking the extremities of the linear chromosomal DNA. Mol. Microbiol. 19:261-271.
9. Lezhava, A., T. Mizukami, T. Kajitani, D. Kameoka, M. Redenbach, H. Shinkawa, O. Nimi, and H. Kinashi. 1995. Physical map of the linear chromosome of Streptomyces griseus. J. Bacteriol. 177:6492-6498.
10. Lezhava, A., D. Kameoka, H. Sugino, K. Goshi, H. Shinkawa, O. Nimi, S. Horinouchi, T. Beppu, and H. Kinashi. 1997. Chromosomal deletions in Streptomyces griseus that remove the afsA locus. Mol. Gen. Genet. 253:478-483.
11. Lin, Y.-S., H. M. Kieser, D. A. Hopwood, and C. W. Chen. 1993. The chromosomal DNA of Streptomyces lividans 66 is linear. Mol. Microbiol. 10:923-933.
12. Omura, S., H. Ikeda, J. Ishikawa, A. Hanamoto, C. Takahashi, M. Shinose, Y. Takahashi, H. Horikawa, H. Nakazawa, T. Osonoe, H. Kikuchi, T. Shiba, Y. Sakaki, and M. Hattori. 2001. Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites. Proc. Natl. Acad. Sci. USA 98:12215-12220.
13. Pandza, S., G. Pfalzer, J. Cullum, and D. Hranueli. 1997. Physical mapping shows that the unstable oxytetracycline gene cluster of Streptomyces rimosus lies close to one end of the linear chromosome. Microbiology 143:1493-1501.
14. Pang, X., X. Zhou, Y. Sun, and Z. Deng. 2002. Physical map of the linear chromosome of Streptomyces hygroscopicus 10-22 deduced by analysis of overlapping large chromosomal deletions. J. Bacteriol. 184:1958-1965.
15. Qin, Z., and S. N. Cohen. 2002. Survival mechanism for Streptomyces linear replicons after telomere damage. Mol. Microbiol. 45:785-794.
16. Rauland, U., I. Glocker, M. Redenbach, and J. Cullum. 1995. DNA amplifications and deletions in Streptomyces lividans 66 and the loss of one end of the linear chromosome. Mol. Gen. Genet. 246:37-44.
17. Redenbach, M., H. M. Kieser, D. Denapalte, A. Eichner, J. Cullum, H. Kinashi, and D. A. Hopwood. 1996. A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome. Mol. Microbiol. 21:77-96.
18. Redenbach, M., F. Flett, W. Piendl, I. Glocker, U. Rauland, O. Wafzig, R. Kliem, P. Leblond, and J. Cullum. 1993. The Streptomyces lividans 66 chromosome contains a 1 MB deletogenic region flanked by two amplifiable regions. Mol. Gen. Genet. 241:255-262.
19. Sakaguchi, K. 1990. Invertrons, a class of structurally and functionally related genetic elements that includes linear DNA plasmids, transposable elements, and genomes of adeno-type viruses. Microbiol. Rev. 54:66-74.
20. Volff, J.-N., and J. Altenbuchner. 1997. Influence of disruption of the recA gene on genetic instability and genome rearrangement in Streptomyces lividans. J. Bacteriol. 179:2440-2445.
21. Volff, J.-N., and J. Altenbuchner. 1998. Genetic instability of the Streptomyces chromosome. Mol. Microbiol. 27:239-246.
22. Yang, M. C., and R. Losick. 2001. Cytological evidence for association of the ends of the linear chromosome in Streptomyces coelicolor. J. Bacteriol. 183:5180-5186.