Visualization of single molecules of mRNA in situ

Methods in Enzymology

Volumn 361, Issue , 2003, Pages 245-304

  Femino, Andrea M ^b   Fogarty, Kevin ^a   Lifshitz, Lawrence M ^a   Carrington, Walter ^a   Singer, Robert H ^b  

^a UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

^b ALBERT EINSTEIN COLLEGE OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA;

ARTICLE; FLUORESCENCE IN SITU HYBRIDIZATION; IMAGE ANALYSIS; MICROSCOPY; OLIGONUCLEOTIDE PROBE; OPTICS; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; RNA ANALYSIS; THREE DIMENSIONAL IMAGING;

EID: 0037286446     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(03)61015-3     Document Type: Article

References (66)

1. R. H. Singer and A. M. Femino, Patent Number 5,866,331. University of Massachusetts, Worcester, 1999.
2. A. M. Femino, F. S. Fay, K. Fogarty, and R. H. Singer, Science 280, 585 (1998).
3. A. M. Femino, Doctoral Dissertation, Graduate School of Biomedical Sciences. University of Massachusetts Medical School, Worcester, 2001.
4. J. B. Lawrence, R. H. Singer, and L. M. Marselle, Cell 57, 493 (1989).
5. E. Viegas-Pequignot, B. Dutrillaux, H. Magdelenat, and M. Coppey-Moisan, Proc. Natl. Acad. Sci. U.S.A. 86, 582 (1989).
6. B. F. Brandriff, L. A. Gordon, and B. J. Trask, Environ. Mol. Mutagen. 18, 259 (1991).
7. B. J. Trask, Methods Cell Biol. 35, 3 (1991).
8. D. G. Albertson, R. M. Fishpool, and P. S. Birchall, Methods Cell Biol. 48, 339 (1995).
9. P. S. Birchall, R. M. Fishpool, and D. G. Albertson, Nat. Genet. 11, 314 (1995).
10. H. Yokota, G. van den Engh, J. E. Hearst, R. K. Sachs, and B. J. Trask, J. Cell Biol. 130, 1239 (1995).
11. K. L. Taneja and R. H. Singer, J. Cell. Biochem. 44, 241 (1990).
12. K. L. Taneja, L. M. Lifshitz, F. S. Fay, and R. H. Singer, J. Cell Biol. 119, 1245 (1992).
13. G. J. Bassell, H. Zhang, A. L. Byrd, A. M. Femino, R. H. Singer, K. L. Taneja, L. M. Lifshitz, I. M. Herman, and K. S. Kosik, J. Neurosci. 18, 251 (1998).
14. E. H. Kislauskis, Z. Li, R. H. Singer, and K. L. Taneja, J. Cell Biol. 123, 165 (1993).
15. G. Zhang, K. L. Taneja, R. H. Singer, and M. R. Green, Nature 372, 809 (1994).
16. K. L. Taneja, M. McCurrach, M. Schalling, D. Housman, and R. H. Singer, J. Cell Biol. 128, 995 (1995).
17. D. A. Samarsky, M. J. Fournier, R. H. Singer, and E. Bertrand, EMBO J. 17, 3747 (1998).
18. J. C. Politz, R. A. Tuft, T. Pederson, and R. H. Singer, Curr. Biol. 9, 285 (1999).
19. H. L. Zhang, R. H. Singer, and G. J. Bassell, J. Cell Biol. 147, 59 (1999).
20. D. M. Shotton, Histochem. Cell Biol. 104, 97 (1995).
21. G. J. Bassell, C. M. Powers, K. L. Taneja, and R. H. Singer, J. Cell Biol. 126, 863 (1994).
22. K. Peck, L. Stryer, A. N. Glazer, and R. A. Mathies, Proc. Natl. Acad. Sci. U.S.A. 86, 4087 (1989).
23. E. Betzig and R. J. Chichester, Science 262, 1422 (1993).
24. J. K. Trautman, J. J. Macklin, L. E. Brus, and E. Betzig, Nature 369, 40 (1994).
25. S. Nie, D. T. Chiu, and R. N. Zare, Science 266, 1018 (1994).
26. T. Funatsu, Y. Harada, M. Tokunaga, K. Saito, and T. Yanagida, Nature 374, 555 (1995).
27. D. A. Agard and J. W. Sedat, Nature 302, 676 (1983).
28. D. A. Agard, Annu. Rev. Biophys. Bioeng. 13, 191 (1984).
29. F. S. Fay, K. E. Fogarty, and J. M. Coggins, in "Optical Methods in Cell Physiology" (P. D. Weer and B. Salzberg, eds.), p. 51. John Wiley & Sons, New York, 1986.
30. F. S. Fay, W. Carrington, and K. E. Fogarty, J. Microsc. 153, 133 (1989).
31. G. Sluder and D. E. Wolf, eds., Methods Cell Biol. 56 (1998).
32. G. R. Bright, in "Fluorescent Probes for Biology Function of Living Cells - A Practical Guide" (W. T. Mason and G. Rolf, eds.), p. 204. Academic Press, New York, 1993.
33. D. L. Taylor and Y. L. Wang, "Fluorescence Microscopy of Living Cells in Culture." Academic Press, San Diego, CA, 1989.
34. A. Waggoner, R. DeBiasio, P. Conrad, G. R. Bright, L. Ernst, K. Ryan, M. Nederlof, and D. Taylor, Methods Cell Biol. 30, 449 (1989).
35. B. Herman and J. J. Lemasters, "Optical Microscopy: Emerging Methods and Applications." Academic Press, San Diego, CA, 1993.
36. C. V. Johnson, R. H. Singer, and J. B. Lawrence, Methods Cell Biol. 35, 73 (1991).
37. Y. Hiraoka, J. W. Sedat, and D. A. Agard, Science 238, 36 (1987).
38. R. S. Aikens, D. A. Agard, and J. W. Sedat, Methods Cell Biol. 29, 291 (1989).
39. M. Coppey-Moisan, J. Delic, H. Magdelenat, and J. Coppey, Methods Mol. Biol. 33, 359 (1994).
40. R. Rizzuto, W. Carrington, and R. A. Tuft, Trends Cell Biol. 8, 288 (1998).
41. R. M. Long, R. H. Singer, X. Meng, I. Gonzalez, K. Nasmyth, and R.-P. Jansen, Science 277, 383 (1997).
42. G. J. Bassell, H. Zhang, A. L. Byrd, A. M. Femino, R. H. Singer, K. L. Taneja, L. M. Lifshitz, I. M. Herman, and K. S. Kosik, J. Neurosci. 18, 251 (1998).
43. K. L. Taneja, L. M. Lifshitz, F. S. Fay, and R. H. Singer, J. Cell Biol. 119, 1245 (1992).
44. F. S. Fay, K. L. Taneja, S. Shenoy, L. Lifshitz, and R. H. Singer, Exp. Cell Res. 231, 27 (1997).
45. K. R. Castleman, in "Digital Image Processing" (A. V. Oppenheim, ed.), p. 429. Prentice-Hall, Englewood Cliffs, NJ, 1979.
46. K. R. Castleman, in "Digital Image Processing," p. 667. Prentice Hall, Upper Saddle River, NJ, 1996.
47. I. T. Young, Methods Cell Biol. 30, 1 (1989).
48. D. Halliday and R. Resnick, in "Physics for Students of Science and Engineering," Combined Ed., p. 1020. John Wiley & Sons, New York, 1965.
49. S. Inoue, Methods Cell Biol. 30, 85 (1989).
50. J. L. Harris, J. Opt. Soc. Am. 54, 931 (1964).
51. K. R. Castleman, in "Digital Image Processing," p. 566. Prentice-Hall, Upper Saddle River, NJ, 1996.
52. K. R. Castleman, in "Digital Image Processing," p. 574. Prentice-Hall, Upper Saddle River, NJ, 1996.
53. W. Carrington, Proc. SPIE 1205, 72 (1990).
54. E. D. W. Moore, E. F. Etter, K. D. Philipson, W. A. Carrington, K. E. Fogarty, L. M. Lifshitz, and F. S. Fay, Nature 365, 657 (1993).
55. R. B. Mujumdar, L. A. Ernst, S. R. Mujumdar, and A. S. Waggoner, Cytometry 10, 11 (1989).
56. K. R. Castleman, "Digital Image Processing," p. 414. Prentice-Hall, Upper Saddle River, NJ, 1996.
57. M. H. Caruthers, in "Topics in Molecular and Structural Biology" (J. S. Cohen, ed.), p. 7. Macmillan Press, London, 1989.
58. E. Jablonski, E. W. Moomaw, R. H. Tullis, and J. L. Ruth, Nucleic Acids Res. 14, 6115 (1986).
59. J. L. Ruth, DNA 3, 123 (1984).
60. S. Agrawal, C. Christodoulou, and M. J. Gait, Nucleic Acids Res. 14, 6227 (1986).
61. L. M. Smith, M. W. Hunkapiller, T. J. Hunkapiller, and L. E. Hood, Nucleic Acids Res. 13, 2399 (1985).
62. C. R. Cantor and M. M. Warshaw, Biopolymers 9, 1059 (1970).
63. K. R. Castleman, in "Digital Image Processing" (A. V. Oppenheim, ed.), p. 293. Prentice-Hall, Englewood Cliffs, NJ, 1979.
64. W. Carrington, Proc. SPIE 1205, 72 (1990).
65. W. A. Carrington, R. M. Lynch, E. D. W. Moore, G. Isenberg, K. E. Fogarty, and F. S. Fay, Science 268, 1483 (1995).
66. K. Taneja and R. H. Singer, Anal. Biochem. 166, 389 (1987).