Surface-mediated mineral development by bacteria

Reviews in Mineralogy

Volumn 35, Issue , 1997, Pages 176-180

  Fortin, D ^a   Ferris, F G ^b   Beveridge, T J ^c  

^a UNIVERSITY OF OTTAWA   (Canada)

^b UNIVERSITY OF TORONTO   (Canada)

^c UNIVERSITY OF GUELPH   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 33750843005     PISSN: 02750279     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (96)

1. Adams LF, Ghiorse WC (1987) Characterization of extracellular Mn2+-oxidizing activity and isolation of an Mn2+-oxidizing protein from Leptothrix discophora SS-1. Bacteriol 169:1279-1285
2. Adams LF, Ghiorse WC (1988) Oxidation state of Mn in the Mn-oxide produced by Leptothrix disciphora SS-1. Geochim Cosmochim Acta 52:2073-2076
3. Aller RC, Macklin JE, Cox RTJ (1986) Diagenesis of Fe and S in Amazon inner shelf muds: apparent dominance of Fe reduction and implications for the genesis of ironstones. Cont Shelf Res 6:263-289
4. Appanna VD, Preston CM (1987) Manganese elicits the synthesis of a novel exopolysaccharide in an artic Rhizobium. FEES Lett 215:79-82
5. Barghoorn ES, Tyler SA (1965) Microorganisms from the Gunflint chert. Science 147:563-577
6. Berner RA (1971) Bacterial processes effecting the precipitation of calcium carbonate in sediments. The Johns Hopkins Univ Studies in Geology 19:247-251
7. Berner RA (1980) Early Diagenesis, A Theoretical Approach. Princeton Univ Press, Princeton, NJ
8. Beveridge TJ (1981) Ultrastructure, chemistry and function of the bacterial wall. Int Rev Cytol 72:229-317
9. Beveridge TJ (1988) The bacteria surface: general considerations towards design and function. Can J Microbiol 34:363-372
10. Beveridge TJ (1989a) The structure of bacteria. In: JS Poindexter, ER Lcadbetter (eds) Bacteria in Nature, p 1-65, Plenum Press, New York
11. Beveridge TJ (1989b) Role of cellular design in bacterial metal accumulation and mineralization. Ann Rev Microbiol 43:147-171
12. Beveridge TJ, Murray RGB (1976) Uptake and retention of metals by cell walls of Bacillus subtilis. J Bacteriol 127:1502-1518
13. Beveridge TJ, Murray RGE (1980) Sites of metal deposition in the cell wall of Bacillus subtilis. J Bacteriol 141:876-887
14. Beveridge TJ, Koval SF (1981) Binding of metals to cell envelopes of Escherichia colt K-12. Appl Environ Microbiol 42:325-335
15. Beveridge TJ, Doyle RJ (cds) (1989) Metal Ions and Bacteria. John Wiley & Sons, New York
16. Beveridge TJ, Forsbcrg CW, Doyle RJ (1982) Major sites of metal binding in Bacillus licheniformis walls. JBacteriol 150:1438-1448
17. Beveridge TJ, Meloche JD, Fyfe WS, Murray RGE (1983) Diagenesis of metals chemically complexed to bacteria: laboratory formation of metal phosphates, sulfides and organic condensâtes in artificial sediments. Appl Environ Microbiol 45:1094-1108
18. Blatt H (1982) Sedimentary Petrology. W.H. Freeman, San Francisco
19. Boogerd FC, De Vrind JPM (1987) Manganese oxidation by Leptothrix disciphora. J Bacteriol 169:489-494
20. Burne RV, Moore LS (1987) Microbialites: Organosedimentary deposits of benthic microbial communities. Palaios 2:241-254
21. Coleman ML, Hedrick DB, Lovley DR, White DC, Pye K (1993) Reduction of Fe(III) in sediments by sulfate-reducing bacteria. Nature 361:36-438
22. Corpe W (1964) Factors influencing growth and polysaccharide formation by strains of Chromobacterium violaceum. J Bacteriol 88:1433-1437
23. Cowen JP, Bruland KW (1985) Metal deposits associated with bacteria: Implications for Fe and Mn marine biogeochemistry. Deep-Sea Res 32:253-272
24. Dahanayake K, Krumbein WE (1985) Ultrastructure of a microbial mat generated phosphorite. Mineral Deposita 20:260-265
25. Degens ET, Ittekkot IV (1982) In situ metal staining of biological membranes in sediments. Nature 298:262-264
26. Deer WS, Howie RA, Zussman J (1992) An Introduction to the Rock Forming Minerals. 2nd ed. Longmans, Hong Kong
27. Doyle RJ, Matthews TH, Streips UN (1980) Chemical basis for selectivity of metal ions by the Bacillus subtilis cell wall. J Bacteriol 143:471-480
28. Dyer B, Krumbein WE, Mossman DJ (1988) Nature and origin of stratiform kerogen seams in lower proterozoic Witwatersrand-type paleoplacers-the case for biogenicity. Geomicrobiol J 6:33-47
29. Eglinton G, Scott PM, Belsky T, Burkingame AL, Calvin M (1964) Hydrocarbons of biological origin from a one-billion-year-old sediment. Science 145:263-264
30. Ehrlich HL (1990) Geomicrobiology. 2nd ed. Marcel Dekker, New-York
31. Ehrlich HL (I996) How microbes influence mineral growth and dissolution. Chem Geol 132:5-9
32. Fein JB, Daughney CJ, Yee N, Davis T. (1997) The thermodynamics of metal adsorption onto bacterial surfaces. Geochim Cosmochim Acta (in press)
33. Ferris FG, Beveridge TJ (1984) Binding of a paramagnetic metal cation to Escherichia coll K-12 outer membrane vesicles. FEMS Microbiol Lett 24:43-46
34. Ferris FG, Beveridge TJ, Fyfe WS (1986) Iron-silica crystallite nucleation by bacteria in a geothermal sediment. Nature 320:609-611
35. Ferris FG, Fyfe WS, Beveridge TJ (1987) Bacteria as nucleation sites for authigenic minerals in a metal contaminated lake sediment. Chem Geol 63:225-232
36. Ferris FG, Fyfe WS, Beveridge TJ (1988) Metallic ion activity by Bacillus subtilis: Implications for the fossilization of microorganisms. Geology 16:149-152
37. Ferris G, Tazaki K, Fyfe WS (1989) Iron oxides in acid mine drainage environments and their association with bacteria. Chem Geol 74:321-330
38. Ferris FG, Wiese RG, Fyfe WS (1994) Precipitation of carbonate minerals by microorganisms: Implications for silicate weathering and the global carbon dioxide budget. Geomicrobiol J 12:1-13
39. Ferris FG, Fratton CM, Gerits JP, Schultze-Lam S, Sherwood-Lollar B (1995) Microbial precipitation of a strontium calcite phase at a groundwater discharge zone near Rock Creek, British Columbia, Canada. Geomicrobiol J 13:57-67
40. Ferris FG, Thompson JB, Beveridge TJ (1997) Modem freshwater microbialites from Kelly Lake, British Columbia, Canada. Palaios (in press)
41. Forstner U (1982) Accumulative phases for heavy metals in limnic sediments. Hydrobiologia 91:269-284
42. Fortin D, Tessier A, Leppard GC (1993) Characteristics of lacustrine iron oxyhydroxides. Geochim Cosmochim Acta 57:4391-4404.
43. Fortin D, Davis B, Beveridge TJ (1995) Biogeochemical phenomena induced by bacteria within sulfidic mine tailings. J Indust Microbiol 14:178-185
44. Fortin D, Davis B.Beveridge TJ (1996) Role of Thiobacillus and sulfate-reducing bacteria in iron biocycling in oxic and acidic mine tailings. FEMS Microbiol Ecol 21:11-24
45. Fortin D, Beveridge TJ (1997a) Microbial sulfate reduction within sulfidic mine tailings: formation of diagenetic Fe-sulfides. Geomicrobiol J 14:1-21
46. Fortin D, Beveridge TJ (1997b) Role of the bacterium, Thiobacillus, in the formation of silicates in acidic mine tailings. Chem Geol (in press)
47. Glenn CR, Arthur MA (1988) Petrology and major element geochemistry of Peru margin phosphorites and associated diagenetic minerals: Authigenesis in modern organic-rich sediments. Marine Geol 80:231-267
48. Gonçalves MLS, Sigg L, Reutlinger M, Stumm W (1987) Metal ion binding by biological surfaces: voltametric assessment in the presence of bacteria. Sei Tot Environ 60:105-119
49. Harrison AP Jr (1984) The acidophilic thiobacilli and other acidophilic bacteria that share their habitat. Annu Rev Microbiol 38:265-292
50. Hinman NW, Lindstrom RF (1996) Seasonal changes in silica deposition in hot spring systems. Chem Geol 132:237-246
51. 2 barometer. Geology 19:929-932
52. + influx. FEMS Microbiol Lett 2:193-197
53. Jones B, Renaut RW (1996) Influence of thermophilic bacteria on calcite and silica precipitation in hot springs with water temperatures above 90'C: evidence from Kenya and New Zealand. Can J Earth Sei 33:72-83
54. Kobluk DR, Crawford DR (1990) A modem hypersaline organic mud- and gypsum-dominated basin and associated microbialites. Palaios 5:134-148
55. Konhauser KO, Schultze-Lam S, Ferris FG, Fyfe WS, Longstaffe FJ, Beveridge TJ (1994). Mineral precipitation by epilithic biofilms in the Speed River, Ontario, Canada. Appl Environ Microbiol 60:549-553
56. Konhauser KO, Fyfe WS, Ferris FG, Beveridge TJ (1993) Metal sorption and mineral precipitation by bacteria in two Amazonian river systems: Rio Solimoes and Rio Negro, Brazil. Geology 21:1103-1106
57. Lanstrom O, Tullborg E-L (1995) Interactions of trace elements with fracture filling minerals from the Aspo Hard Rock Laboratory. SKB Technical Report 95-13, Swedish Nuclear Fuel and Waste Management Company, Stockholm
58. Lovley DR (1991) Dissimilatory Fe(IH) and Mn(IV) reduction. Microbiol Rev 55:259-287
59. Lovley DR, FH Chapelle. (1995) Deep subsurface microbial processes. Rev Geophys 33:65-381
60. Makin SA., Beveridge TJ (1996) The influence of A-band and B-band lipopolysaccharide on the surface characteristics and adhesion of Pseudomonas aeruginosa surfaces. Microbiol 142:299-307
61. Mann S (1988) Molecular recognition in biomineralization. Nature 332:119-124
62. Marquis RE, Mayzel K, Carstensen EL (1976) Cation exchange in cell walls of gram-positive bacteria. Can ' J Microbiol 22:975-982
63. Mohagheghi A, Updegraff DM, Goldhaber MB ( 1985) The role of sulfate-reducing bacteria in the deposition of sedimentary uranium ores. Geomicrobiol J 4:153-173
64. Morse JW, Bender ML (1990) Partition coefficients in calcite: examination of factors influencing the validity of experimental results and their application to natural systems. Geochim Cosmochim Acta 53:745-750
65. Müllen MD, Wolf DC, Ferris F., Beveridge TJ, Flemming CA, Bailey GW (1989) Bacterial sorption of heavy metals. Appl Environ Microbiol 55:3143-3149
66. Nakajima A, Sakaguchi T (1986) Selective accumulation of heavy metals by microorganisms. Appl Microbiol Biotechnol 24:59-64
67. Pedersen K, Ekendahl S (1990) Distribution and activity of bacteria in deep granitic groundwaters of southeastern Sweden. Microb Ecol 20:37-52
68. Pedersen K, Karlsson F (1995) Investigations of subterranean microorganisms: their importance for performance assessment of radioactive waste disposal. SKB Technical Report 95-10, Swedish Nuclear Fuel and Waste Management Company, Stockholm
69. Pentecost A, Bauld J (1988) Nucleation of calcite on the sheaths of cyanobacteia using a simple diffusion cell. Geomicrobiol J 6:129-135
70. Pentecost A, Spiro B (1990) Stable carbon and oxygen isotope composition of calcites associated with modern freshwater cyanobacteria and algae. Geomicrobiol J 8:17-26
71. Pronk JT, Johnson DB (1992) Oxidation and reduction of iron by acidophilic bacteria. Geomicrobiol J 10:153-171
72. Roden EE, Lovley DR (1993). Dissimilatory Fe(nT)-reduction by the marine microorganism Desulfuromonas aceloxidans. Appl Environ Microbiol 59:734-742
73. Saxby JD (1969) Metal-organic chemistry of the geochemical cycle. Rev. Pure Appl Chem 19:131-150
74. Schöpf JW, Walter MR (1983) Archean microfossils: new evidence of ancient microbes. In: JW Schöpf (ed) Earth's Earliest Biosphere: Its Origin and Evolution, p 214-239, Princeton Univ Press, Princeton, NJ
75. Schultze-Lam S, Harauz G, Beveridge TJ (1992) Participation of a cyanobacterial S-Iayer in fine-grain mineral formation. J Bacteriol 174:7971-7981
76. Schultze-Lam S, Thompson JB, Bcveridge TJ (1993) Metal ion immobilization by bacterial surfaces in freshwater environments. Water Poll Res J Canada 28:51-81
77. Schultze-Lam S, Beveridge TJ (1994) Nucleation of celestite and strontianite on a cyanobacterial S-Iayer. Appl Environ Microbiol 60:447-453
78. Schultze-Lam S, Urrutia MM, Beveridge YJ (1995a) Metal and silicate Sorption and subsequent mineral formation on bacterial surfaces: subsurface implications. In: HE Alien (ed) Metal Contaminated Aquatic Sediments, p 111-147, Ann Arbor Press, Chelsea, Michigan
79. Schultze-Lam S, Ferris FG, Konhauser KO, Wiese RG (1995b) In situ silicification of an Icelandic hot spring microbial mat: implications for microfossil formation. Can J Earth Sei 32:2021-2026
80. Singer PC, Stumm W (1970) Acidic mine drainage. Science 167:1121-1123
81. Soudry D, Champtier Y (1983) Microbial processes in Negev phosphorites (Southern Isreal). Sedimentology 30:411-423
82. Southam G, Beveridge TJ (1992) Enumeration of Thiobacilli within pH-neutral and acidic mine tailings and their role in the development of secondary mineral soil. Appl Environ Microbiol 58:1904-1912
83. Southam G, Beveridge TJ (1994) The in vitro formation of placer gold by bacteria. Geochim Cosmochim Acta 58:4527-4530
84. Southgate PN (1986) Cambrian phoscrete profiles, coated grains, and microbial processes in phosphogenesis: Georgina basin, Australia. J Sediment Petrol 56:429-441
85. St-Cyr L, Fortin D, Campbell PGC (1993) Microscopic observations of the iron plaque of a submerged aquatic plant (Vallisneria americana Michx). Aquatic Botany 46:155-167
86. Stumm W (1992) Chemistry of the Solid-Water Interface. John Wiley, New York
87. Stumm W, JJ Morgan (1996) Aquatic Chemistry. 3rd ed. John Wiley, New York
88. Thompson JB, Ferris FG (1990) Cyanobacterial precipitation of gypsum, calcite, and magnesite from natural alkaline lake water. Geology 18:995-998
89. Thompson JB, Schultze-Lam S, Beveridge TJ, Des Marais DJ (1997). Whiting events: biogenic origin due to the photosynthetic activity of cyanobacterial picoplankton. Limnol Oceanogr 42:133-141
90. Trudinger PA, Chambers LA, Smith JW (1985) Low temperature sulfate reduction: Biological versus abiological. Can J Earth Sei 22:1910-1918
91. Urrutia M, Kemper .M, Doyle R, Beveridge TJ (1992) The membrane-induced proton motive force influences the metal binding ability of Bacillus subtilis cell walls. Appl Environ Microbiol 58:3837-3844
92. Urrutia MM, Beveridge TJ (1993a) Mechanism of silicate binding to the bacterial cell wall in Bacillus subtilis. J Bacteriol 175:1936-1945
93. Urrutia MM, Beveridge TJ (1993b) Remobilization of heavy metals retained as oxyhydroxides or silicates by Bacillus subtilis cells. Appl Environ Microbiol 59:4323-4329
94. Urrutia MM, Beveridge TJ (1994) Formation of fine-grained silicate minerals and metal precipitates by a bacterial surface (Bacillus subtilis) and the implications in the global cycling of silicon. Chem Geol 116:261-280
95. Vasconcelos C, McKenzie JA, Bernasconi S, Grujic D, Tien AJ (1995) Microbial mediation as a possible mechanism for natural dolomite formation at low temperatures. Nature 377:220-222
96. Walter MR (1983) Archean stromatolites: evidence of Earthis earliest benthos. In: JW Schöpf (ed) Earth's Earliest Biosphere: Its Origin and Evolution, p 187-213, Princeton Univ Press, Princeton, NJ