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Volumn 325, Issue 1, 2003, Pages 211-223

Solution structure of a circular-permuted variant of the potent HIV-inactivating protein cyanovirin-N: Structural basis for protein stability and oligosaccharide interaction

Author keywords

Circular permuted CV N; Cyanovirin N; gp120; High mannose sugars; Protein carbohydrate interaction

Indexed keywords

AMIDE; CARBOHYDRATE DERIVATIVE; CYANOVIRIN N; EPITOPE; GLYCINE; GLYCOPROTEIN GP 120; MANNOSE; OLIGOSACCHARIDE; PROLINE; PROTEIN WT; TRYPTOPHAN; UNCLASSIFIED DRUG;

EID: 0037258662     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0022-2836(02)01205-6     Document Type: Article
Times cited : (32)

References (32)
  • 1
    • 0030790094 scopus 로고    scopus 로고
    • Discovery of cyanovirin-N, a novel human immunodeficiency virus-inactivating protein that binds viral surface envelope glycoprotein gp120: Potential applications to microbicide development
    • Boyd, M. R., Gustafson, K. R., McMahon, J. B., Shoemaker, R. H., O'Keefe, B. R., Mori, T. et al. (1997). Discovery of cyanovirin-N, a novel human immunodeficiency virus-inactivating protein that binds viral surface envelope glycoprotein gp120: Potential applications to microbicide development. Antimicrob. Agents Chemother. 41, 1521-1530.
    • (1997) Antimicrob. Agents Chemother. , vol.41 , pp. 1521-1530
    • Boyd, M.R.1    Gustafson, K.R.2    McMahon, J.B.3    Shoemaker, R.H.4    O'Keefe, B.R.5    Mori, T.6
  • 2
    • 0033997468 scopus 로고    scopus 로고
    • Multiple antiviral activities of cyanovirin-N: Blocking of human immunodeficiency virus type 1 gp120 interaction with CD4 and coreceptor and inhibition of diverse enveloped viruses
    • Dey, B., Lerner, D. L., Lusso, P., Boyd, M. R., Elder, J. H. & Berger, E. A. (2000). Multiple antiviral activities of cyanovirin-N: Blocking of human immunodeficiency virus type 1 gp120 interaction with CD4 and coreceptor and inhibition of diverse enveloped viruses. J. Virol. 74, 4562-4569.
    • (2000) J. Virol. , vol.74 , pp. 4562-4569
    • Dey, B.1    Lerner, D.L.2    Lusso, P.3    Boyd, M.R.4    Elder, J.H.5    Berger, E.A.6
  • 3
    • 0035028207 scopus 로고    scopus 로고
    • Cyanovirin-N defines a new class of antiviral agent targeting N-linked, high-mannose glycans in an oligosaccharide-specific manner
    • Bolmstedt, A. J., O'Keefe, B. R., Shenoy, S. R., McMahon, J. B. & Boyd, M. R. (2001). Cyanovirin-N defines a new class of antiviral agent targeting N-linked, high-mannose glycans in an oligosaccharide-specific manner. Mol. Pharmacol. 59, 949-954.
    • (2001) Mol. Pharmacol. , vol.59 , pp. 949-954
    • Bolmstedt, A.J.1    O'Keefe, B.R.2    Shenoy, S.R.3    McMahon, J.B.4    Boyd, M.R.5
  • 4
    • 0035040784 scopus 로고    scopus 로고
    • Selective interactions of the human immunodeficiency virus-inactivating protein cyanovirin-N with high-mannose oligosaccharides on gp120 and other glycoproteins
    • Shenoy, S. R., O'Keefe, B. R., Bolmstedt, A. J., Cartner, L. K. & Boyd, M. R. (2001). Selective interactions of the human immunodeficiency virus-inactivating protein cyanovirin-N with high-mannose oligosaccharides on gp120 and other glycoproteins. J. Pharmacol. Expt. Ther. 297, 704-710.
    • (2001) J. Pharmacol. Expt. Ther. , vol.297 , pp. 704-710
    • Shenoy, S.R.1    O'Keefe, B.R.2    Bolmstedt, A.J.3    Cartner, L.K.4    Boyd, M.R.5
  • 5
    • 0036773694 scopus 로고    scopus 로고
    • Multisite and multivalent binding between cyanovirin-N and branched oligomannosides: Calorimetric and NMR characterization
    • Shenoy, S. R., Barrientos, L. G., Ratner, D. M., O'Keefe, B. R., Seeberger, P. H., Gronenborn, A. M. & Boyd, M. R. (2002). Multisite and multivalent binding between cyanovirin-N and branched oligomannosides: Calorimetric and NMR characterization. Chem. Biol. 9, 1109-1118.
    • (2002) Chem. Biol. , vol.9 , pp. 1109-1118
    • Shenoy, S.R.1    Barrientos, L.G.2    Ratner, D.M.3    O'Keefe, B.R.4    Seeberger, P.H.5    Gronenborn, A.M.6    Boyd, M.R.7
  • 6
  • 7
    • 0032921247 scopus 로고    scopus 로고
    • Cyanovirin-N binds to gp120 to interfere with CD4-dependent human immunodeficiency virus type 1 virion binding, fusion, and infectivity but does not affect the CD4 binding site on gp120 or soluble CD4-induced conformational changes in gp120
    • Esser, M. T., Mori, T., Mondor, I., Sattentau, Q. J., Dey, B., Berger, E. A. et al. (1999). Cyanovirin-N binds to gp120 to interfere with CD4-dependent human immunodeficiency virus type 1 virion binding, fusion, and infectivity but does not affect the CD4 binding site on gp120 or soluble CD4-induced conformational changes in gp120. J. Virol. 73, 4360-4371.
    • (1999) J. Virol. , vol.73 , pp. 4360-4371
    • Esser, M.T.1    Mori, T.2    Mondor, I.3    Sattentau, Q.J.4    Dey, B.5    Berger, E.A.6
  • 8
    • 0033789322 scopus 로고    scopus 로고
    • Analysis of the interaction between the HIV-inactivating protein cyanovirin-N and soluble forms of the envelope glycoproteins gp120 and gp41
    • O'Keefe, B. R., Shenoy, S. R., Xie, D., Zhang, W., Muschik, J. M., Currens, M. J. et al. (2000). Analysis of the interaction between the HIV-inactivating protein cyanovirin-N and soluble forms of the envelope glycoproteins gp120 and gp41. Mol. Pharmacol. 58, 982-992.
    • (2000) Mol. Pharmacol. , vol.58 , pp. 982-992
    • O'Keefe, B.R.1    Shenoy, S.R.2    Xie, D.3    Zhang, W.4    Muschik, J.M.5    Currens, M.J.6
  • 9
    • 0035112229 scopus 로고    scopus 로고
    • Cyanovirin-N, a potent human immunodeficiency virus-inactivating protein, blocks both CD4-dependent and CD4-independent binding of soluble gp120 (sgp120) to target cells, inhibits sCD4-induced binding of sgp120 to cell-associated CXCR4, and dissociates bound sgp120 from target cells
    • Mori, T. & Boyd, M. R. (2001). Cyanovirin-N, a potent human immunodeficiency virus-inactivating protein, blocks both CD4-dependent and CD4-independent binding of soluble gp120 (sgp120) to target cells, inhibits sCD4-induced binding of sgp120 to cell-associated CXCR4, and dissociates bound sgp120 from target cells. Antimicrob. Agents Chemother. 45, 664-672.
    • (2001) Antimicrob. Agents Chemother. , vol.45 , pp. 664-672
    • Mori, T.1    Boyd, M.R.2
  • 10
    • 18244422922 scopus 로고    scopus 로고
    • The broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2G12 recognizes a cluster of alpha 1 → 2 mannose residues on the outer face of gp120
    • Scanlan, C. N., Pantophlet, R., Wormald, M. R., Saphire, E. O., Stanfield, R., Wilson, I. A. et al. (2002). The broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2G12 recognizes a cluster of alpha 1 → 2 mannose residues on the outer face of gp120. J. Virol. 76, 7306-7321.
    • (2002) J. Virol. , vol.76 , pp. 7306-7321
    • Scanlan, C.N.1    Pantophlet, R.2    Wormald, M.R.3    Saphire, E.O.4    Stanfield, R.5    Wilson, I.A.6
  • 12
    • 0033532212 scopus 로고    scopus 로고
    • Crystal structure of cyanovirin-N, a potent HIV-inactivating protein, shows unexpected domain swapping
    • Yang, F., Bewley, C. A., Louis, J. M., Gustafson, K. R., Boyd, M. R., Gronenborn, A. M. et al. (1999). Crystal structure of cyanovirin-N, a potent HIV-inactivating protein, shows unexpected domain swapping. J. Mol. Biol. 288, 403-412.
    • (1999) J. Mol. Biol. , vol.288 , pp. 403-412
    • Yang, F.1    Bewley, C.A.2    Louis, J.M.3    Gustafson, K.R.4    Boyd, M.R.5    Gronenborn, A.M.6
  • 13
    • 0034791996 scopus 로고    scopus 로고
    • Solution structure of a cyanovirin-N:Manα1-2Manα complex: Structural basis for high-affinity carbohydrate-mediated binding to gp120
    • Bewley, C. A. (2001). Solution structure of a cyano-virin-N:Manα1-2Manα complex: Structural basis for high-affinity carbohydrate-mediated binding to gp120. Structure, 9, 931-940.
    • (2001) Structure , vol.9 , pp. 931-940
    • Bewley, C.A.1
  • 14
    • 0036113691 scopus 로고    scopus 로고
    • The domain-swapped dimer of cyanovirin-N is a metastable folding intermediate; reconciliation of X-ray and NMR structures
    • Barrientos, L. G., Louis, J. M., Botos, I., Mori, T., Han, Z., O'Keefe, B. R. et al. (2002). The domain-swapped dimer of cyanovirin-N is a metastable folding intermediate; reconciliation of X-ray and NMR structures. Structure, 10, 673-686.
    • (2002) Structure , vol.10 , pp. 673-686
    • Barrientos, L.G.1    Louis, J.M.2    Botos, I.3    Mori, T.4    Han, Z.5    O'Keefe, B.R.6
  • 16
    • 0037072880 scopus 로고    scopus 로고
    • Structures of the complexes of a potent anti-HIV protein cyanovirin-N and high-mannose oligosaccharides
    • Botos, I., O'Keefe, B. R., Shenoy, S. R., Cartner, L. K., Ratner, D. M., Seeberger, P. H. et al. (2002). Structures of the complexes of a potent anti-HIV protein cyanovirin-N and high-mannose oligosaccharides. J. Biol. Chem. 277, 34336-34342.
    • (2002) J. Biol. Chem. , vol.277 , pp. 34336-34342
    • Botos, I.1    O'Keefe, B.R.2    Shenoy, S.R.3    Cartner, L.K.4    Ratner, D.M.5    Seeberger, P.H.6
  • 18
    • 0036467155 scopus 로고    scopus 로고
    • Design and initial characterization of a circular permuted variant of the potent HIV-inactivating protein cyanovirin-N
    • Barrientos, L. G., Louis, J. M., Hung, J., Smith, T. H., O'Keefe, B. R., Gardella, R. S. et al. (2002). Design and initial characterization of a circular permuted variant of the potent HIV-inactivating protein cyanovirin-N. Proteins: Struct. Funct. Genet. 46, 153-160.
    • (2002) Proteins: Struct. Funct. Genet. , vol.46 , pp. 153-160
    • Barrientos, L.G.1    Louis, J.M.2    Hung, J.3    Smith, T.H.4    O'Keefe, B.R.5    Gardella, R.S.6
  • 19
    • 0031576336 scopus 로고    scopus 로고
    • Torsion angle dynamics for NMR structure calculation with the new program DYANA
    • Guntert, P., Mumenthaler, C. & Wuthrich, K. (1997). Torsion angle dynamics for NMR structure calculation with the new program DYANA. J. Mol. Biol. 273, 283-298.
    • (1997) J. Mol. Biol. , vol.273 , pp. 283-298
    • Guntert, P.1    Mumenthaler, C.2    Wuthrich, K.3
  • 20
    • 3543012707 scopus 로고    scopus 로고
    • Crystallography and NMR system (CNS): A new software system for macromolecular structure determination
    • Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W. et al. (1998). Crystallography and NMR system (CNS): A new software system for macromolecular structure determination. Acta Crystallog. 54, 905-921.
    • (1998) Acta Crystallog. , vol.54 , pp. 905-921
    • Brunger, A.T.1    Adams, P.D.2    Clore, G.M.3    DeLano, W.L.4    Gros, P.5    Grosse-Kunstleve, R.W.6
  • 21
    • 0000243829 scopus 로고
    • PROCHECK: A program to check the stereochemical quality of protein structures
    • Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. N. (1993). PROCHECK: A program to check the stereochemical quality of protein structures. J. Appl. Crystallog. 26, 283-291.
    • (1993) J. Appl. Crystallog. , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.N.4
  • 22
    • 0036307699 scopus 로고    scopus 로고
    • Potent inhibition of HIV-1 fusion by cyanovirin-N requires only a single high affinity carbohydrate binding site: Characterization of low affinity carbohydrate binding site knockout mutants
    • Chang, L. C. & Bewley, C. A. (2002). Potent inhibition of HIV-1 fusion by cyanovirin-N requires only a single high affinity carbohydrate binding site: Characterization of low affinity carbohydrate binding site knockout mutants. J. Mol. Biol. 318, 1-8.
    • (2002) J. Mol. Biol. , vol.318 , pp. 1-8
    • Chang, L.C.1    Bewley, C.A.2
  • 23
    • 0036195024 scopus 로고    scopus 로고
    • A linear synthesis of branched high-mannose oligosaccharides from the HIV-1 viral surface glycoprotein gp120
    • Ratner, D. M., Plante, O. J. & Seeberger, P. H. (2002). A linear synthesis of branched high-mannose oligosaccharides from the HIV-1 viral surface glycoprotein gp120. Eur. J. Org. Chem. 5, 826-833.
    • (2002) Eur. J. Org. Chem. , vol.5 , pp. 826-833
    • Ratner, D.M.1    Plante, O.J.2    Seeberger, P.H.3
  • 24
    • 0035936861 scopus 로고    scopus 로고
    • Automated solid-phase synthesis of oligosaccharides
    • Plante, O. J., Palmacci, E. R. & Seeberger, P. H. (2001). Automated solid-phase synthesis of oligosaccharides. Science, 291, 1523-1527.
    • (2001) Science , vol.291 , pp. 1523-1527
    • Plante, O.J.1    Palmacci, E.R.2    Seeberger, P.H.3
  • 25
    • 0029400480 scopus 로고
    • NMRPipe: A multidimensional spectral processing system based on UNIX pipes
    • Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfizer, J. & Bax, A. (1995). NMRPipe: A multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR, 6, 277-293.
    • (1995) J. Biomol. NMR , vol.6 , pp. 277-293
    • Delaglio, F.1    Grzesiek, S.2    Vuister, G.W.3    Zhu, G.4    Pfizer, J.5    Bax, A.6
  • 26
    • 34249765651 scopus 로고
    • NMR view: A computer-program for the visualization and analysis of NMR data
    • Johnson, B. A. & Blevins, R. A. (1994). NMR view: A computer-program for the visualization and analysis of NMR data. J. Biomol. NMR, 4, 603-614.
    • (1994) J. Biomol. NMR , vol.4 , pp. 603-614
    • Johnson, B.A.1    Blevins, R.A.2
  • 27
    • 0034685436 scopus 로고    scopus 로고
    • Prediction of sterically induced alignment in a dilute liquid crystalline phase: Aid to protein structure determination by NMR
    • Zweckstetter, M. & Bax, A. (2000). Prediction of sterically induced alignment in a dilute liquid crystalline phase: Aid to protein structure determination by NMR. J. Am. Chem. Soc. 122, 3791-3792.
    • (2000) J. Am. Chem. Soc. , vol.122 , pp. 3791-3792
    • Zweckstetter, M.1    Bax, A.2
  • 29
    • 0029881007 scopus 로고    scopus 로고
    • MOLMOL: A program for display and analysis of macromolecular structures
    • Koradi, R., Billeter, M. & Wuthrich, K. (1996). MOLMOL: A program for display and analysis of macromolecular structures. J. Mol. Graph. 14, 51.
    • (1996) J. Mol. Graph. , vol.14 , pp. 51
    • Koradi, R.1    Billeter, M.2    Wuthrich, K.3
  • 30
    • 0026319199 scopus 로고
    • Protein folding and association: Insights from interfacial and thermodynamic properties of hydrocarbons
    • Nichols, A., Sharp, K. A. & Honig, B. (1991). Protein folding and association: Insights from interfacial and thermodynamic properties of hydrocarbons. Proteins: Struct. Funct. Genet. 11, 281-296.
    • (1991) Proteins: Struct. Funct. Genet. , vol.11 , pp. 281-296
    • Nichols, A.1    Sharp, K.A.2    Honig, B.3
  • 31
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
    • Guex, N. & Peitsch, M. C. (1997). SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling. Electrophoresis, 18, 2714-2723.
    • (1997) Electrophoresis , vol.18 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 32
    • 0033003335 scopus 로고    scopus 로고
    • Protein backbone angle restraints from searching a database for chemical shift and sequence homology
    • Cornilescu, G., Delaglio, F. & Bax, A. (1999). Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J. Biomol. NMR, 13, 289-302.
    • (1999) J. Biomol. NMR , vol.13 , pp. 289-302
    • Cornilescu, G.1    Delaglio, F.2    Bax, A.3


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