Comparison of biochemical, molecular, and visual methods to quantify Phaeocryptopus gaeumannii in douglas-fir foliage

Phytopathology

Volumn 93, Issue 1, 2003, Pages 121-126

  Winton, L M ^a   Manter, D K ^b   Stone, J K ^a   Hansen, E M ^a  

^a USFS PNW Research Station   (United States)

^b USDA FOREST SERVICE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ABIES; FUNGI; PHAEOCRYPTOPUS GAEUMANNII; PSEUDOTSUGA MENZIESII;

EID: 0037214879     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO.2003.93.1.121     Document Type: Article

References (29)

1. Böhm, J., Hahn, A., Schubert, R., Bahnweg, G., Adler, N., Nechwatal, J., Oehlmann, R., and Oßwald, W. 1999. Real-time quantitative PCR: DNA determination in isolated spores of the mycorrhizal fungus Glomus mosseae and monitoring of Phytophthora infestans and Phytophthora citricola in their respective host plants. J. Phytopathol. 147:409-416.
2. Bradley, D., Vincent, C., Carpenter, R., and Coen, E. 1996. Pathways for inflorescence and floral induction in Antirrhinum. Development 122: 1535-1544.
3. Bruce, D., and DeMars, D. J. 1974. Volume equations for second-growth Douglas-fir. U.S. Dep. Agric.-For. Serv. Res. Note PNW-239.
4. Capitano, B. R. 1999. The Infection and Colonization of Douglas-Fir by Phaeocryptopus Gaeumannii. M.S. thesis. Oregon State University, Corvallis.
5. Chastagner, G. A. 1997. Christmas tree plantations. Pages 88-89 in: Compendium of Conifer Diseases. E. M. Hansen and K. J. Lewis, eds. The American Phytopathological Society, St. Paul, MN.
6. Collantes-Fernandez, E., Zaballos, A., Alvarez-Garcia, G., and Ortega-Mora, L, M. 2002. Quantitative detection of Neospora caninum in bovine aborted fetuses and experimentally infected mice by real-time PCR. J. Clin. Microbiol. 40:1194-1198.
7. Constabel, E, C., Michaels, T. E., Goodwin, P. H., Mayer, J. E., and Pastor-Corrales, M. A. 1996. Evaluation of a DNA probe for the quantitative detection of common bacterial blight in common bean and its application in a breeding program. Euphytica 90:129-135.
8. Gaeumann, E. 1930. Über eine neue krankheit der douglasien. Schweiz. Z. Forstwes. 81:63-67.
9. Gibson, U. E. M., Heid, C. A., and Williams, P. M. 1996. A novel method for real time quantitative RT-PCR. Genome Res. 6:995-1001.
10. Goodwin, P. H., English, J. T., Neher, D. A., Duniway, J. M., and Kirkpatrick, B. C. 1990. Detection of Phytophthora parasitica from soil and host tissue with a species-specific DNA probe. Phytopathology 80:277-281.
11. Hansen, E. M., Stone, J. K., Capitano, B. R., Rosso, P., Sutton, W., Winton, L. M., Kanaskie, A., and McWilliams, M. G. 2000. Incidence and impacts of Swiss needle cast in forest plantations of Douglas-fir in coastal Oregon. Plant Dis. 84:773-778.
12. Heid, C. A., Stevens, J., Livak, K. J., and Williams, P. M. 1996. Real time quantitative PCR. Genome Res. 6:986-994.
13. Hood, I. A. 1982. Phaeocryptopus gaeumannii on Pseudotsuga menziesii in southern British Columbia. N.Z. J. For. Sci. 12:415-424.
14. Hood, I. A. 1997. Swiss needle cast. Pages 55-56 in: Compendium of Conifer Diseases. E. M. Hansen and K. J. Lewis, eds. The American Phytopathological Society, St. Paul, MN.
15. Hood, I. A., and Kershaw, D. J. 1975. Distribution and infection period of Phaeocryptopus gaeumannii in New Zealand. N.Z. J. For. Sci. 5:201-208.
16. Judelson, H. S., and Messenger-Routh, B. 1996. Quantitation of Phytophthora cinnamomi in avocado roots using a species-specific DNA probe. Phytopathology 86:763-768.
17. Livak, K. J., Flood, S. J. A., Marmaro, J., Giusti, W., and Deetz, K. 1995. Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization. PCR Methods Appl. 5:357-362.
18. Magan, N., and Smith, M. K. 1996. Isolation of the endophytes Lophodermium piceae and Rhizosphaera kalkhoffii from Sitka spruce needles in poor and good growth sites and in vitro effects of environmental factors. Phyton-Horn. 36:103-110.
19. Manter, D. K., Kelsey, R. G., and Stone, J. K. 2001. Quantification of Phaeocryptopus gaeumannii colonization in Douglas-fir needles by ergosterol analysis. For. Pathol. 31:229-240.
20. Osswald, W. F., Holl, W., and Elstner, E. F. 1986. Ergosterol as a biochemical indicator of fungal infection in spruce and fir needles from different sources. Z. Naturforsch. 41:542-546.
21. Savill, M. G., Murray, S. R., Scholes, P., Maas, E. W., McCormick, R. E., Moore, E. B., and Gilpin, B. J. 2001. Application of polymerase chain reaction (PCR) and TaqMan PCR techniques to the detection and identification of Rhodococcus coprophilus in faecal samples, J. Microbiol. Methods 47:355-368.
22. Stone, J. K. 1987. Initiation and Development of latent infections by Rhabdocline parkeri on Douglas-fir. Can. J. Bot. 65:2614-2621.
23. Stone, J. K., and Carroll, G. 1985. Observations of the development of ascocarps in Phaeocryptopus gaeumannii and on the possible existence of an anamorphic state. Sydowia 38:317-323.
24. Stults, J. R., Snoeyenbos-West, O., Methe, B., Lovely, D. R., and Chandler, D. P. 2001. Application of the 5′ fluorogenic exonuclease assay (TaqMan) for quantitative ribosomal DNA and rRNA analysis in sediments. Appl. Environ. Microbiol. 67:2781-2789.
25. Weigel, D., Alvarez, J., Smyth, D. R., Yanofsky, M. F., and Meyerowitz, E. M. 1992. LEAFY controls floral meristem identity in Arabidopsis. Cell 69:843-859.
26. Welsh, J., and McClelland, M. 1990. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18:7213-7218.
27. Winton, L. M. 2001. Phylogenetics, Population Genetics, Molecular Epidemiology, and Pathogenicity of the Douglas-Fir Swiss Needle Cast Pathogen Phaeocryptopus Gaeumannii. Ph.D. diss. Oregon State University, Corvallis.
28. Winton, L. M., Stone, J. K., Watrud, L. S., and Hansen, E. M. 2002. Simultaneous one-tube quantification of host and pathogen DNA with real-time polymerase chain reaction. Phytopathology 92:112-116.
29. Zhang, A. W., Hartman, G. L., Curio-Penny, B., Pedersen, W. L., and Becker, K. B. 1999. Molecular detection of Diaporthe phaseolorum and Phomopsis longicolla from soybean seeds. Phytopathology 89:796-804.