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Volumn 70, Issue 1, 2003, Pages 11-20

Finding subtle motifs with variable gaps in unaligned DNA sequences

Author keywords

Gaps; Gene regulation; Motif detection; Subtle signals; Transcription factors

Indexed keywords

ALGORITHMS; DIMERS; GENES; MOLECULAR BIOLOGY;

EID: 0037211964     PISSN: 01692607     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0169-2607(01)00198-5     Document Type: Article
Times cited : (8)

References (21)
  • 1
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRisi J., Iyer V., Brown P. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science. 278:1997;680-696.
    • (1997) Science , vol.278 , pp. 680-696
    • DeRisi, J.1    Iyer, V.2    Brown, P.3
  • 2
    • 0031453850 scopus 로고    scopus 로고
    • Genome-wide expression monitoring in Saccharomyces cerevisiae
    • Wodicak L., Dong H., Mittmann M., Ho M., Lockhart D. Genome-wide expression monitoring in Saccharomyces cerevisiae. Nat. Biotechnol. 15:1997;1359-1367.
    • (1997) Nat. Biotechnol. , vol.15 , pp. 1359-1367
    • Wodicak, L.1    Dong, H.2    Mittmann, M.3    Ho, M.4    Lockhart, D.5
  • 3
    • 0025372992 scopus 로고
    • Identification of consensus patterns in unaligned DNA sequences known to be functionally related'
    • Hertz G., Hartzell G. III, Stormo G. Identification of consensus patterns in unaligned DNA sequences known to be functionally related'. Comput. Appl. Biosci. 6:(2):1990;81-92.
    • (1990) Comput. Appl. Biosci. , vol.6 , Issue.2 , pp. 81-92
    • Hertz, G.1    Hartzell G. III2    Stormo, G.3
  • 4
    • 0027912333 scopus 로고
    • Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignments
    • Lawrence C., Altschul S., Boguski M., Liu J., Neuwald A., Wootton J. Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignments. Science. 262:1993;208-214.
    • (1993) Science , vol.262 , pp. 208-214
    • Lawrence, C.1    Altschul, S.2    Boguski, M.3    Liu, J.4    Neuwald, A.5    Wootton, J.6
  • 5
    • 0002759539 scopus 로고
    • Unsupervised learning of multiple motifs in biopolymers using expectation maximization
    • Bailey T., Elkan C. Unsupervised learning of multiple motifs in biopolymers using expectation maximization. Mach. Learning. 21:1995;51-80.
    • (1995) Mach. Learning , vol.21 , pp. 51-80
    • Bailey, T.1    Elkan, C.2
  • 8
    • 0034141782 scopus 로고    scopus 로고
    • Prediction of transcription regulatory sites in Archaea by a comparative genomic approach
    • Gelfand M., Koonin E., Mironov A. Prediction of transcription regulatory sites in Archaea by a comparative genomic approach. Nucleic Acids Res. 28:(3):2000;695-705.
    • (2000) Nucleic Acids Res. , vol.28 , Issue.3 , pp. 695-705
    • Gelfand, M.1    Koonin, E.2    Mironov, A.3
  • 9
    • 0032483307 scopus 로고    scopus 로고
    • Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
    • van Helden J., Andre B., Collado-Vides J. Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. J. Mol. Biol. 281:1998;827-842.
    • (1998) J. Mol. Biol. , vol.281 , pp. 827-842
    • Van Helden, J.1    Andre, B.2    Collado-Vides, J.3
  • 11
    • 0034656326 scopus 로고    scopus 로고
    • Discovering regulatory elements in non-coding sequences by analysis of spaced dyads
    • van Helden J., Rios A.F., Collado-Vides J. Discovering regulatory elements in non-coding sequences by analysis of spaced dyads. Nucleic Acids Res. 28:2000;1808-1818.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 1808-1818
    • Van Helden, J.1    Rios, A.F.2    Collado-Vides, J.3
  • 12
    • 0031655082 scopus 로고    scopus 로고
    • An algorithm for finding novel gapped motifs in DNA sequences
    • E. Rocke, M. Tompa, An algorithm for finding novel gapped motifs in DNA sequences, RECOMM-98, 1998, pp. 228-233.
    • (1998) RECOMM-98 , pp. 228-233
    • Rocke, E.1    Tompa, M.2
  • 13
    • 0026553672 scopus 로고
    • PROSITE: A dictionary of sites and patterns in proteins
    • Bairoch A. PROSITE: a dictionary of sites and patterns in proteins. Nucleic Acids Res. 20:1992;2013-2018.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 2013-2018
    • Bairoch, A.1
  • 14
    • 2242422877 scopus 로고    scopus 로고
    • PhD Thesis, Department of Informatics, University of Bergen, Norway
    • I. Jonassen, PhD Thesis, Department of Informatics, University of Bergen, Norway, 1996.
    • (1996)
    • Jonassen, I.1
  • 17
    • 0034043604 scopus 로고    scopus 로고
    • Combinatorial motif analysis and hypothesis generation on a genomic scale
    • Hu Y., Sandmeyer S., McLaughlin C., Kibler D. Combinatorial motif analysis and hypothesis generation on a genomic scale. Bioinformatics. 16:2000;222-232.
    • (2000) Bioinformatics , vol.16 , pp. 222-232
    • Hu, Y.1    Sandmeyer, S.2    McLaughlin, C.3    Kibler, D.4
  • 19
    • 0035032318 scopus 로고    scopus 로고
    • An integrated approach for genome-wide gene expression analysis
    • Elsevier Science, Amsterdam
    • Y. Hu, An integrated approach for genome-wide gene expression analysis, Computer Methods and Programs in Biomedicine, vol. 65, no. 3, Elsevier Science, Amsterdam, 2001, pp. 163-174.
    • (2001) Computer Methods and Programs in Biomedicine , vol.65 , Issue.3 , pp. 163-174
    • Hu, Y.1
  • 20
    • 0025320805 scopus 로고
    • An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences
    • Lawrence C., Reilly A. An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences. Protein: Struct. Funct. Genet. 7:1990;41-51.
    • (1990) Protein: Struct. Funct. Genet. , vol.7 , pp. 41-51
    • Lawrence, C.1    Reilly, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.