Spatial genetic subdivision between northern Australian and southeast Asian populations of Pristipomoides multidens: A tropical marine reef fish species

Fisheries Research

Volumn 59, Issue 1-2, 2002, Pages 57-69

  Ovenden, Jennifer R ^a   Lloyd, Julie ^b   Newman, Stephen J ^c   Keenan, Clive P ^d   Slater, Leigh S ^a  

^a Southern Fisheries Centre   (Australia)

^b Research and Development Branch ^*  (Australia)

^c WESTERN AUSTRALIAN FISHERIES AND MARINE RESEARCH LABORATORIES   (Australia)

^d Bribie Isl Aquacult Res Centre   (Australia)

Author keywords

Fisheries management; Mitochondrial DNA; Northern Australia; Population subdivision; Pristipomoides; Restriction enzyme analysis; Southeast Asia

Indexed keywords

FISHERY MANAGEMENT; GENETIC DIFFERENTIATION; GENETIC STRUCTURE; MITOCHONDRIAL DNA; POPULATION GENETICS;

ASIA; AUSTRALIA;

PRISTIPOMOIDES; PRISTIPOMOIDES MULTIDENS;

EID: 0037203133     PISSN: 01657836     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0165-7836(01)00415-5     Document Type: Article

References (36)

1. Allen, G.R., 1985. Snappers of the world: An annotated and illustrated catalogue of lutjanid species known to date. FAO Catalogue, Vol. 6.
2. Benzie, J.A.H., Fresher, S.H., Ballment, E., 1992. Geographical variation in allozyme frequencies of populations of Penaeus monodon (Crustacea: Decapoda) in Australia. Am. J. Mar. Freshw. Res. 43, 715-725.
3. Benzie, J.A.H., Ballment, E., Fresher, S.H., 1993. Genetic structure of Penaeus monodon in Australia: Concordant results from mtDNA and allozymes. Aquaculture 111, 89-93.
4. Bermingham, E., McCafferty, S.S., Martin, A.P., 1998. Fish biogeography and molecular clocks: Perspectives from the Panamanian isthmus. In: Kocher, T.D., Stepien, C.A. (Eds.), Molecular Systematics of Fishes. Academic Press, London, pp. 113-128.
5. Chapman, R.W., Sedberry, G.R., Koenig, C.C., Eleby, B.M., 1999. Stock identification of gag, Mycteroperca microlepis, along the southeast coast of the United States. Mar. Biotechnol. 1, 137-146.
6. Chappell, J., Shackleton, N.J., 1986. Oxygen isotopes and sea level. Nature 324, 137-140.
7. Chenoweth, S., 1999. The Geography and History of Mitochondrial Genes in Two Estuarine Fish Species. Ph.D. Thesis. Griffith University, Queensland.
8. Coope, G.R., 1979. Late cenozoic fossil coleoptera: Evolution, biogeography and ecology. Ann. Rev. Ecol. Syst. 10, 247-267.
9. Doherty, P.J., Planes, S., Mather, P., 1995. Gene flow and larval duration in seven species of fish from the Great Barrier Reef. Ecology 76, 2373-2391.
10. Elliott, N.G., 1996. Allozyme and mitochondrial DNA analysis of the tropical Saddle-tail Sea Perch, Lutjanus malabaricus (Schneider), from Australian waters. Mar. Freshw. Res. 47, 869-876.
11. Excoffier, L., Smouse, P.E., Quattro, J.M., 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics 131, 479-491.
12. Faber, J.E., Stepien, C.A., 1997. The utility of mitochondrial DNA control region sequences for analysing phylogenetic relationships among populations, species and genera of the Percidae. In: Kocher, T.D., Stepien, C.A. (Eds.), Molecular Systematics of Fishes. Academic Press, London, pp. 129-143.
13. Fujii, T., Nishida, M., 1997. High sequence variability in the mitochondrial DNA control region of the Japanese flounder, Paralichthys olivaceus. Fish. Sci. 63, 906-910.
14. Gomes, C., Oxenford, H.A., Dales, R.B.G., 1999. Mitochondrial DNA D-loop variation and implications for stock structure of the four-wing flying fish, Hirundichthys affinis, in the central western Atlantic. Bull. Mar. Sci. 64, 485-500.
15. Gordon, A.L., Fine, R.A., 1996. Pathways of water between the Pacific and Indian Oceans in the Indonesian seas. Nature 379, 146-149.
16. Grant, W.S., Bowen, B.W., 1998. Shallow population histories in deep evolutionary lineages of marine fishes: Insights from sardines and anchovies and lessons for conservation. J. Hered. 89, 415-426.
17. Guo, S., Thomson, E., 1992. Performing the exact test of the Hardy-Weinberg proportion for multiple alleles. Biometrics 48, 361-372.
18. Hedgecock, D., 1994. Does variance in reproductive success limit effective population sizes of marine organisms? In: Beaumont, A.R. (Ed.), Genetics and Evolution Aquatic Organisms. Chapman & Hall, London, pp. 122-134.
19. Keenan, C.P., 1994. Recent evolution of population structure in Australian Barramundi, Lates calcarifer (Bloch): An example of isolation by distance in one dimension. Aust. J. Mar. Freshw. Res. 45, 1123-1148.
20. Kimura, M., 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111-120.
21. Kocher, T.D., Carleton, K.L., 1997. Base substitutions in fish mitochondrial DNA: Patterns and rates. In: Kocher, T.D., Stepien, C.A. (Eds.), Molecular Systematics of Fishes. Academic Press, San Diego, CA, pp. 13-24.
22. Lee, W.-J., Conroy, J., Howell, W.H., Kocher, T.D., 1995. Structure and evolution of teleost mitochondrial control regions. J. Mol. Evol. 41, 54-66.
23. MacManus, J.W., 1985. Marine speciation, tectonics and sea-level changes in southeast Asia. In: Proceedings of the Fifth International Conference of Coral Reef Con. 4, pp. 133-138.
24. McMillen-Jackson, A.L., Bert, T.M., Steele, P., 1994. Population genetics of the blue crab Callinectes sapidus: Modest population structuring in a background of high gene flow. Mar. Biol. 118, 53-65.
25. Nei, M., Kumar, S., 2000. Molecular Evolution and Phylogenetics. Oxford University Press, Oxford, 333 pp.
26. Newman, S.J., Steckis, R.A., Edmonds, J.S., Lloyd, J., 2000. Stock structure of the goldband snapper, Pristipomoides multidens (Pisces: Lutjanidae) from the waters of northern and western Australia by stable isotope ratio analysis of sagittal otolith carbonate. Mar. Ecol. Prog. Ser. 198, 239-247.
27. Ovenden, J.R., White, R.W.G., 1990. Mitochondrial and allozyme genetics of incipient speciation in a landlocked population of Galaxias truttaceus (Pisces: Galaxiidae). Genetics 124, 701-716.
28. Ovenden, J.R., Brasher, D.J., White, R.W.G., 1992. Mitochondrial DNA analyses of the red rock lobster Jasus edwardsii supports an apparent absence of population subdivision throughout Australasia. Mar. Biol. 112, 319-326.
29. Palumbi, S.R., 1994. Genetic divergence, reproductive isolation and marine speciation. Annu. Rev. Ecol. Syst. 25, 547-572.
30. Raymond, M., Rousset, F., 1995. An exact test for population differentiation. Evolution 49, 1280-1283.
31. Rice, W.R., 1989. Analysing tables of statistical tests. Evolution 32, 223-225.
32. Sainsbury, K.J., 1987 Assessment and management of the demersal fishery on the continental shelf of northwestern Australia pp. 465-503. In: Polovina, J.J., Ralston, S. (Eds.), Tropical Snappers and Gropers: Biology and Fisheries Management. Westview Press, Boulder CO, 659 pp.
33. Saitou, N., Nei, M., 1987. The neighbour-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
34. Schneider, S., Kueffer, J.-M., Roessli, D., Excoffier, L., 1997. Arlequin: A Software for Population Genetic Data Analysis, Version 1.1. Genetics and Biometry Lab, Department of Anthropology, University of Geneva.
35. Swofford, D., 1999. PAUP* 4.0 Phylogenetic Analysis Using Parsimony (* and Other Methods). Sinauer, Sunderland, MA.
36. Waples, R.S., 1998. Separating the wheat from the chaff: Patterns of genetic differentiation in high gene flow species. J. Hered. 89, 438-450.