Detection of Arabidopsis thaliana AtRAD1 cDNA variants and assessment of function by expression in a yeast rad1 mutant

Gene

Volumn 296, Issue 1-2, 2002, Pages 1-9

  Vonarx, Edward J ^a   Howlett, Niall G ^b   Schiestl, Robert H ^b   Kunz, Bernard A ^a  

^a DEAKIN UNIVERSITY   (Australia)

^b HARVARD SCHOOL OF PUBLIC HEALTH   (United States)

Author keywords

Alternative RNA splicing; Heterologous expression; Intrachromosomal recombination; Nucleotide excision repair; Saccharomyces cerevisiae

Indexed keywords

COMPLEMENTARY DNA; ENDONUCLEASE; MESSENGER RNA; PROTEIN ATRAD1; UNCLASSIFIED DRUG; VEGETABLE PROTEIN; ARABIDOPSIS PROTEIN; DNA BINDING PROTEIN; RAD1 PROTEIN, S CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEIN;

ALTERNATIVE RNA SPLICING; ARABIDOPSIS; ARTICLE; COMPLEX FORMATION; DNA SEQUENCE; EXON; MOLECULAR SIZE; MUTATION; PLANT ROOT; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN ISOLATION; SEQUENCE HOMOLOGY; ULTRAVIOLET RADIATION; AMINO ACID SEQUENCE; CELL DIVISION; GENE EXPRESSION; GENE EXPRESSION REGULATION; GENETIC COMPLEMENTATION; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; RADIATION EXPOSURE; RADIATION RESPONSE; SACCHAROMYCES CEREVISIAE;

ARABIDOPSIS; ARABIDOPSIS THALIANA; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

ALTERNATIVE SPLICING; AMINO ACID SEQUENCE; ARABIDOPSIS; ARABIDOPSIS PROTEINS; BASE SEQUENCE; CELL DIVISION; DNA, COMPLEMENTARY; DNA-BINDING PROTEINS; DOSE-RESPONSE RELATIONSHIP, RADIATION; ENDONUCLEASES; GENE EXPRESSION; GENE EXPRESSION REGULATION, PLANT; GENETIC COMPLEMENTATION TEST; MOLECULAR SEQUENCE DATA; MUTATION; RNA, MESSENGER; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID; ULTRAVIOLET RAYS;

EID: 0037151791     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(02)00869-7     Document Type: Article

References (32)

1. Adair G.M., Rolig R.L., Moore-Faver D., Zabelshansky M., Wilson J.H., Nairn R.S. Role of ERCC1 in removal of long non-homologous tails during targeted homologous recombination. EMBO J. 20:2001;5552-5561.
2. Agatep, R., Kirkpatrick, R., Parchaliuk, D., Woods, R., Gietz, R., 1998. Transformation of Saccharomyces cerevisiae by the lithium acetate/single-stranded carrier, DNA/polyethylene glycol (LiAc/ss-DNA/PEG) protocol. Tech. Tips Online, http://tto.trends.com
3. Araújo S.J., Wood R.D. Protein complexes in nucleotide excision repair. Mutat. Res. 435:1999;23-33.
4. Bardwell A.J., Bardwell L., Johnson D.K., Friedberg E.C. Yeast DNA recombination and repair proteins Rad1 and Rad10 constitute a complex in vivo mediated by localized hydrophobic domains. Mol. Microbiol. 8:1993;1177-1188.
5. Bharatkumar N.P., Dunn R.J., David S. Alternative RNA splicing generates a glycosylphosphatidylinositol-anchored form of ceruloplasmin in mammalian brain. J. Biol. Chem. 275:2000;4305-4310.
6. Boeke J.D., Lacroute F., Fink G.R. A positive selection for mutants lacking orotidine-5′ phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance. Mol. Gen. Genet. 197:1984;345-346.
7. Brown J.W., Simpson C.G. Splice site selection in plant pre-mRNA splicing. Annu. Rev. Plant Physiol. Plant Mol. Biol. 49:1998;77-95.
8. Brown J.W., Smith P., Simpson C.G. Arabidopsis consensus intron sequences. Plant Mol. Biol. 32:1996;531-535.
9. Chen J.-J., Jiang C.-Z., Britt A.B. Little or no repair of cyclobutyl pyrimidine dimers is observed in the organellar genomes of young Arabidopsis seedlings. Plant. Physiol. 111:1996;19-25.
10. Davies A.A., Friedberg E.C., Tomkinson A.E., Wood R.D., West S.C. Role of the Rad1 and Rad10 proteins in nucleotide excision repair and recombination. J. Biol. Chem. 270:1995;24638-24641.
11. de Silva I.U., McHugh P.J., Clingen P.H., Hartley J.A. Defining the roles of nucleotide excision repair and recombination in the repair of DNA interstrand cross-links in mammalian cells. Mol. Cell. Biol. 20:2000;7980-7990.
12. Fidantsef A.L., Mitchell D.L., Britt A.B. The Arabidopsis UVH1 gene is a homolog of the yeast repair endonuclease RAD1. Plant Physiol. 124:2000;579-586.
13. Friedberg E.C., Walker G.C., Siede W. DNA Repair and Mutagenesis. 1995;ASM Press, Washington, DC.
14. Gallego F., Fleck O., Li A., Wyrzykowska J., Tinland B. AtRAD1, a plant homologue of human and yeast nucleotide excision repair endonucleases, is involved in dark repair of UV damages and recombination. Plant J. 21:2000;507-518.
15. Golovkin M., Reddy A.S.N. Structure and expression of a plant U1 snRNP 70K gene: alternative splicing of U1 snRNP 70K pre-mRNAs produces two different transcripts. Plant Cell. 8:1996;1421-1435.
16. Greenberg R.B., Alberti M., Hearst J.E., Chua M.A., Saffran W.A. Recombinational and mutagenic repair of psoralen interstrand crosslinks in Saccharomyces cerevisiae. J. Biol. Chem. 276:2001;31551-31560.
17. Howlett N.G., Schiestl R.H. Simultaneous measurement of the frequencies of intrachromosomal recombination and chromosome gain using the yeast DEL assay. Mutat. Res. 454:2000;53-62.
18. Klein H. Different types of recombination events are controlled by the RAD1 and RAD52 genes of Saccharomyces cerevisiae. Genetics. 120:1988;367-377.
19. Kunz B.A., Kohalmi L., Kang X., Magnusson K.A. Specificity of the mutator effect caused by disruption of the RAD1 excision repair gene in Saccharomyces cerevisiae. J. Bacteriol. 172:1990;3009-3014.
20. Kuroaka I., Kobertz W.R., Ariza R.R., Biggerstaff M., Essigmann J.M., Wood R.D. Repair of an interstrand DNA cross-link initiated by ERCC1-XPF repair/recombination nuclease. J. Biol. Chem. 275:2000;26632-26636.
21. Liu Z., Hossain G.S., Islas-Osuma M.A., Mitchell D.L., Mount D.W. Repair of UV damage in plants by nucleotide excision repair: Arabidopsis UVH1 DNA repair gene is a homolog of Saccharomyces cerevisiae Rad1. Plant J. 21:2000;519-528.
22. MacKnight R., Bancroft I., Page T., Lister C., Schmidt R., Love K., Westphal L., Murphy G., Sherson S., Cobbett C., Dean C. FCA, a gene controlling flowering time in Arabidopsis, encodes a protein containing RNA-binding domains. Cell. 89:1997;735-745.
23. Niedernhofer L.J., Essers J., Weeda G., Beverloo B., de Wit J., Muijtjens M., Odijk H., Hoeijmakers J.H.J., Kanaar R. The structure-specific endonuclease Ercc1-Xpf is required for targeted gene replacement in embryonic stem cells. EMBO J. 20:2001;6540-6549.
24. Nishihama R., Banno H., Kawahara E., Irie K., Machida Y. Possible involvement of differential splicing in regulation of the activity of Arabidopsis ANP1 that is related to mitogen-activated protein kinase kinase kinases (MAPKKKs). Plant J. 12:1997;39-48.
25. Prakash S., Prakash L. Nucleotide excision repair in yeast. Mutat. Res. 451:2000;13-24.
26. Quaite F.E., Takayanagi S., Ruffini J., Sutherland J.C., Sutherland B.M. DNA damage levels determine cyclobutyl pyrimidine dimer repair mechanisms in alfalfa seedlings. Plant Cell. 6:1994;1636-1641.
27. Queimado L., Reo M., Schultz R.A., Koonin E.V., Aravind L., Nardo T., Stefanini M., Friedberg E.C. Cloning the human and mouse MMS19 genes and functional complementation of a yeast mms19 deletion mutant. Nucleic Acids Res. 29:2001;1884-1891.
28. Schiestl R.H., Prakash S. RAD1, an excision repair gene of Saccharomyces cerevisiae, is also involved in recombination. Mol. Cell. Biol. 8:1988;3619-3626.
29. Schiestl R.H., Prakash S. RAD10, an excision repair gene of Saccharomyces cerevisiae, is involved in the RAD1 pathway of mitotic recombination. Mol. Cell. Biol. 10:1990;2485-2491.
30. Sokal R.R., Rohlf F.J. Biometry. 1969;Freeman, San Francisco.
31. Werneke J.M., Chatfield J.M., Ogren W.L. Alternative mRNA splicing generates the two ribulose bisphoshate carboxylase/oxygenase activase polypeptides in spinach and Arabidopsis. Plant Cell. 1:1989;815-825.
32. Zhang N., Zhang X., Peterson C., Li L., Legerski R. Differential processing of UV mimetic and interstrand crosslink damage by XPF cell extracts. Nucleic Acids Res. 28:2000;4800-4804.