Genomic analysis of protein kinases, protein phosphatases and two-component regulatory systems of the cyanobacterium Anabaena sp. strain PCC 7120

FEMS Microbiology Letters

Volumn 217, Issue 2, 2002, Pages 155-165

  Wang, Li ^a   Sun, Yi Ping ^a   Chen, Wen Li ^a   Li, Jian Hong ^b   Zhang, Cheng Cai ^a,b  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

^b AIX MARSEILLE UNIVERSITÉ   (France)

Author keywords

Evolution; Genome; Protein phosphorylation; Signal transduction; Two component system

Indexed keywords

PHOSPHOPROTEIN PHOSPHATASE; PROTEIN KINASE; PROTEIN SERINE KINASE;

ANABAENA; ARTICLE; BACTERIAL STRAIN; CELL COMMUNICATION; CELL DIFFERENTIATION; CONTROLLED STUDY; CYANOBACTERIUM; GENOME; MULTIGENE FAMILY; NITROGEN FIXATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHOTOSYNTHESIS; PRIORITY JOURNAL; PROKARYOTE; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FUNCTION; SIGNAL TRANSDUCTION;

ANABAENA; CYANOBACTERIA; GENOME, BACTERIAL; PHOSPHOPROTEIN PHOSPHATASE; PHOSPHORYLATION; PROTEIN KINASES; PROTEIN-SERINE-THREONINE KINASES; PROTEIN-TYROSINE KINASES; SENSITIVITY AND SPECIFICITY; SIGNAL TRANSDUCTION;

ANABAENA; ANABAENA SP.; NOSTOC SP. PCC 7120; PROKARYOTA; SYNECHOCYSTIS; SYNECHOCYSTIS SP.; SYNECHOCYSTIS SP. PCC 6803;

EID: 0037126659     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1097(02)01052-2     Document Type: Article

References (28)

1. Stanier R.Y., Cohen-Bazire G. Phototrophic prokaryotes: the cyanobacteria. Annu. Rev. Microbiol. 31:1977;225-274.
2. Wolk, C.P. (2000) Heterocyst formation in Anabaena. In: Prokaryotic Development (Brun, Y.V. and Shimkets, L.J., Eds.), pp. 83-104. ASM Press, Washington, DC.
3. Liang J., Scappino L., Haselkorn R. The patA gene product, which contains a region similar to CheY of Escherichia coli, controls heterocyst pattern formation in the cyanobacterium Anabaena 7120. Proc. Natl. Acad. Sci. USA. 89:1992;5655-5659.
4. Campell E.L., Hagen K.D., Cohen M.F., Summers M.L., Meeks J.C. The devR gene product is characteristic of receivers of two-component regulatory systems and is essential for heterocyst development in the filamentous cyanobacterium Nostoc sp. strain ATCC 29133. J. Bacteriol. 178:1996;2037-2043.
5. Zhu J., Kong R., Wolk C.P. Regulation of hepA of Anabaena sp. strain PCC 7120 by elements 5′ from the gene and by hepK. J. Bacteriol. 180:1998;4233-4242.
6. Hagen K.D., Meeks J.C. Biochemical and genetic evidence for participation of DevR in a phosphorelay signal transduction pathway essential for heterocyst maturation in Nostoc punctiforme ATCC 29133. J. Bacteriol. 181:1999;4430-4434.
7. Zhang C.-C., Friry A., Peng L. Molecular and genetic analysis of two closely linked genes that encode, respectively, a protein phosphatase 1/2A/2B homolog and a protein kinasehomolog in the cyanobacterium Anabaena sp. strain PCC 7120. J. Bacteriol. 180:1998;2616-2622.
8. Zhang C.-C. Bacterial signaling involving eukaryotic-type protein kinases. Mol. Microbiol. 20:1996;9-15.
9. Phalip V., Li J.-H., Zhang C.-C. HstK, a cyanobacterial protein with both a Ser/Thr kinase domain and a His-kinase domain: implication for the mechanism of signal transduction. Biochem. J. 360:2001;639-644.
10. Hoch J.A. Two-component and phosphorelay signal transduction. Curr. Opin. Microbiol. 3:2000;165-170.
11. Kaneko T., Nakamura Y., Wolk C.P., Kuritz T., Sasamoto S., Watanabe A., Iriguchi M., Ishikawa A., Kawashima K., Kimura T., Kishida Y., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakazaki N., Shimpo S., Sugimoto M., Takazawa M., Yamada M., Yasuda M., Tabata S. Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120. DNA Res. 8:2001;205-213.
12. Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S. Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res. 3:1996;109-136.
13. Hanks S.K., Hunter T. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. FASEB J. 9:1995;576-596.
14. Barford D. Molecular mechanisms of the protein serine/threonine phosphatases. Trends Biochem. Sci. 21:1996;407-412.
15. Mizuno T. Compilation of all genes encoding two-component phosphotransfer signal transducers in the genome of Escherichia coli. DNA Res. 4:1997;161-168.
16. Rodrigue A., Quentin Y., Lazdunski A., Méjean V., Foglino M. Two-component systems in Pseudomonas aeruginosa: why so many? Trends Microbiol. 8:2000;498-504.
17. Galperin M.Y., Nikolskaya A.N., Koonin E.V. Novel domains of the prokaryotic two-component signal transduction systems. FEMS Microbiol. Lett. 203:2001;11-21.
18. Ho Y.-S.J., Burden L.M., Hurley J.H. Structure of the GAF domain, a ubiquitous signaling motif and a new class of cyclic GMP receptor. EMBO J. 19:2000;5288-5299.
19. Zhulin I.P., Taylor B.L. PAS domain S-boxes in archaea, bacteria and sensors for oxygen and redox. Trends Biochem. Sci. 22:1997;331-333.
20. Bakal C.J., Davies J.E. No longer an exclusive club: eukaryotic signaling domains in bacteria. Trends Cell Biol. 10:2000;32-38.
21. Zhang C.-C., Gonzalez L., Phalip V. Survey, analysis and genetic organization of genes encoding eukaryotic-like signaling proteins by a cyanobacterial genome. Nucleic Acids Res. 26:1998;3619-3625.
22. Smith T.F., Gaitatzes C., Saxena K., Neer E.J. The WD repeat: a common architecture for diverse functions. Trends Biochem. Sci. 24:1999;181-185.
23. Hisbergues M., Gaitatzes C.G., Joset F., Bedu S., Smith T.F. A noncanonical WD-repeat protein from the cyanobacterium Synechocystis PCC6803: structural and functional study. Protein Sci. 10:2001;293-300.
24. Zhang W., Inouye M., Inouye S. Reciprocal regulation of the differentiation of Myxococcus xanthus by Pkn5 and Pkn6, eukaryotic-like Ser/Thr protein kinases. Mol. Microbiol. 20:1996;435-447.
25. Mizuno T., Kaneko T., Tabata S. Compilation of all genes encoding bacterial two-component signal transducers in the genome of the cyanobacterium, Synechocystis sp. strain PCC 6803. DNA Res. 3:1996;407-414.
26. Throup J.P., Koretke K.K., Bryant A.P., Ingraham K.A., Chalker A.F., Ge Y., Marra A., Wallis N.G., Brown J.R., Holmes D.J., Rosenberg M., Burnham M.K. A genomic analysis of two-component signal transduction in Streptococcus pneumoniae. Mol. Microbiol. 35:2000;566-576.
27. Botsford J.L., Harman J.G. Cyclic AMP in prokaryotes. Microbiol. Rev. 56:1992;100-122.
28. Lavorgna G., Patthy L., Boncinelli E. Were protein internal repreats formed by 'bricolage'? Trends Genet. 17:2001;120-123.