Solution structure of dAATAA and dAAUAA DNA bulges

Nucleic Acids Research

Volumn 30, Issue 12, 2002, Pages 2669-2677

  Gollmick, Friedrich A ^b   Lorenz, Mike ^b   Dornberger, Utz ^a   Von Langen, Johannes ^b   Diekmann, Stephan ^b   Fritzsche, Hartmut ^a  

^a FRIEDRICH SCHILLER UNIVERSITY JENA   (Germany)

^b FRITZ LIPMANN INSTITUTE   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; CURVED DNA; DOUBLE STRANDED DNA; FLUORESCENT DYE; PURINE; PYRIMIDINE; THYMINE; URACIL;

ARTICLE; BASE PAIRING; CONTROLLED STUDY; DNA SEQUENCE; DNA STRUCTURE; ELECTROPHORESIS; ENERGY TRANSFER; FLUORESCENCE ANALYSIS; INTRON; MEASUREMENT; MOLECULAR RECOGNITION; NUCLEAR MAGNETIC RESONANCE; NUCLEIC ACID STRUCTURE; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; STRUCTURE ANALYSIS;

EID: 0037096918     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkf375     Document Type: Article

References (40)

1. RNA bulges as architectural and recognition motifs
2. Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: DNA binding specificity based on energetics of DNA kinking
3. Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: Alteration of DNA binding specificity through alteration of DNA kinking
4. The recognition of distorted DNA structures by HMG-D: A footprinting and molecular modelling study
5. HMG-D complexed to a bulge DNA: An NMR model
6. Analysis of the binding of p53 to DNAs containing mismatched and bulged bases
7. DNA damage by thiol-activated neocarzinostatin chromophore at bulged sites
8. Crystal structure of a group I ribozyme domain: Principles of RNA packing
9. Solution conformation of a five nucleotide RNA bulge loop from a group I intron
10. Solution structure of a five-adenine bulge loop within a DNA duplex
11. Global structure similarities of intact and nicked DNA complexed with IHF measured in solution by fluorescence resonance energy transfer
12. DNA bending induced by high mobility group proteins studied by fluorescence resonance energy transfer
13. Principle of Fluorescence Spectroscopy
14. Fluorescence resonance energy transfer
15. Zwischenmolekulare Energiewanderung und Fluoreszenz
16. Resonance Energy Transfer - Theory and Data
17. Experimentelle und theoretische Untersuchungen des zwischenmolekularen Übergangs von Elektronenanregungsenergie
18. Fluorescence resonance energy transfer and nucleic acids
19. Fluorescence energy transfer analysis of the structure of the four-way DNA junction
20. Solvent suppression in Fourier transform nuclear magnetic resonance
21. Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions
22. Two-dimensional correlation of connected NMR transitions
23. Assignment of the 31P and 1H resonances in oligonucleotides by two-dimensional NMR spectroscopy
24. The effects of sequence context on base dynamics at TpA steps in DNA studied by NMR
25. NMRPipe: A multidimensional spectral processing system based on UNIX Pipes
26. MARDIGRAS - A procedure for matrix analysis of relaxation for discerning geometry of an aqueous structure
27. 1H NMR
28. Hairpin loops consisting of single adenine residues closed by sheared A·A and G·G pairs formed by the DNA triplets AAA and GAG: Solution structure of the d(GTACAAAGTAC) hairpin
29. Furanose sugar conformations in DNA from NMR coupling constants
30. Torsion angle dynamics for NMR structure calculation with the new program DYANA
31. AMBER91
32. MOLMOL: A program for display and analysis of macromolecular structures
33. Defining the structure of irregular nucleic acids: Conventions and principles
34. RNA bulges as architectural and recognition motifs
35. NMR of Proteins and Nucleic Acids
36. Conformational analysis of the deoxyribofuranose ring in DNA by means of sums of proton-proton coupling constants: A graphical method
37. A unified view of polymer, dumbbell and oligonucleotide DNA nearest-neighbor thermodynamics
38. Temperature and salt dependence of the gel migration anomaly of curved DNA fragments
39. Recent advances in FRET: Distance determination in protein-DNA complexes