Effect of cationic charge localization on DNA structure

Biopolymers

Volumn 65, Issue 3, 2002, Pages 173-179

  Gold, Barry ^a  

^a UNIVERSITY OF NEBRASKA MEDICAL CENTER   (United States)

Author keywords

Cationic charge localization; DNA structures; DNA protein complexes

Indexed keywords

DNA; ELECTROSTATICS; GELS; HYDROPHOBICITY; POSITIVE IONS; PROTEINS;

CATIONIC CHARGE LOCALIZATION; TRANSCRIPTIONAL REGULATION;

BIOPOLYMERS;

ALLYLAMINE; CATION; CURVED DNA; DEOXYRIBONUCLEOPROTEIN; DEOXYURIDINE PHOSPHATE; LYSINE; NUCLEIC ACID BASE; PROTEIN;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARTICLE; CHEMICAL REACTION; DNA DETERMINATION; DNA MODIFICATION; DNA SEQUENCE; DNA STRUCTURE; ELECTRICITY; GEL MOBILITY SHIFT ASSAY; NUCLEAR MAGNETIC RESONANCE;

BASE SEQUENCE; CATIONS; DNA; ELECTROSTATICS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; NUCLEIC ACID CONFORMATION; TEMPERATURE; THERMODYNAMICS;

EID: 0037027362     PISSN: 00063525     EISSN: None     Source Type: Journal    
DOI: 10.1002/bip.10215     Document Type: Article

References (40)

1. Hagerman, P. J. Annu Rev Biophys Biophys Chem 1988, 17, 265-286.
2. Levitt, M. Proc Natl Acad Sci USA 1978, 75, 640-644.
3. Zhurkin, V. B.; Poltev, V. I.; Florentev, V. L. J Mol Biol 1980, 14, 882-895.
4. Hagerman, K. R.; Hagerman, P. J. J Mol Biol 1996, 260, 207-223.
5. Baase, W. A.; Schellman, J. A. Makromol Chem Macromol Symp 1986, 1, 51-65.
6. Protein Database. http://www.rcsb.org/pdb/.
7. Luger, K.; Mäder, A. W.; Richmond, R. K.; Sargent, D. F.; Richmond, T. J. Nature 1997, 389, 251-260.
8. Manning, G.; Ebralidse, K. K.; Mirazabekov, A. D.; Rich, A. J Biomol Struct Dynam 1989, 6, 877-889.
9. Strauss, J. K.; Maher, L. J. III. Science 1994, 266, 1829-1834.
10. Strauss-Soukop, J. K.; Vaghefi, M. M.; Hogrefe, R. I.; Maher, L. J. III. Biochemistry 1997, 36, 8692-8698.
11. Thiviyanathan, V.; Vyazovkina, K. V.; Gozansky, E. K.; Bichenchova, E.; Abramova, T. V.; Luxon, B. A.; Lebedev, A. V.; Gorenstein, D. G. Biochemistry 2002, 41, 827-838.
12. Strauss, J. K.; Roberts, C.; Nelson, M. G.; Switzer, C.; Maher, L. J. III. Proc Natl Acad Sci USA 1996, 93, 9515-9520.
13. Strauss, J. K.; Prakash, T. P.; Roberts, C.; Switzer, C.; Maher, L. J. III. Chem Biol 1996, 3, 671-678.
14. Liang, G.; Encell, L.; Switzer, C.; Gold, B. J Am Chem Soc 1995, 117, 10135-10136.
15. Wurdeman, R. L.; Gold, B. Chem Res Toxicol 1988, 1, 146-147.
16. Wurdeman, R. L.; Church, K. M.; Gold, B. J Am Chem Soc 1989, 111, 6408-6412.
17. Wurdeman, R. W.; Douskey, M.; Gold, B. Nucl Acids Res 1993, 21, 4975-4800.
18. Dande, P.; Liang, G.; Chen, F.- X.; Roberts, C.; Switzer, C.; Gold, B. Biochemistry 1997, 36, 6024-6032.
19. Li, Z.; Huang, L.; Dande, P.; Gold, B.; Stone, M. P. J Am Chem Soc 2002, 124, 8553-8560.
20. Heystek, L. E.; Zhou, H.- Q.; Dande, P.; Gold, B. J Am Chem Soc 1998, 120, 12165-12166.
21. Hardwidge, P. R.; Lee, D.- K.; Prakash, T. P.; Iglesias, B.; Den, R. B.; Switzer, C.; Maher, L. J. III. Chem Biol 2001, 8, 967-980.
22. Soto, A. M.; Kankia, B. I.; Dande, P.; Gold, B.; Marky, L. A. Nucl Acids Res 2001, 29, 3638-3645.
23. Soto, A. M.; Kankia, B. I.; Dande, P.; Gold, B.; Marky, L. A. Nucl Acids Res, in press.
24. Marky, L. A.; Kupke, D. W. Meth Enzymol 2000, 323, 419-441.
25. Marky, L. A.; Rentzeperis, D.; Luneva, N. P.; Cosman, M.; Geancintov, N. E.; Kupke, D. W. J Am Chem Soc 1996, 118, 3804-3810.
26. Kankia, B. I.; Kupke, D. W.; Marky, L. A. J Phys Chem B 2001, 105, 11402-11405.
27. Brukner, I.; Susic, S.; Dlakic, M.; Savic, A.; Pongor, S. J Mol Biol 1994, 236, 26-32.
28. Dlakic, M.; Harrington, R. E. J Biol Chem 1995, 270, 29945-29952.
29. Braunlin, W. H.; Nordenskiold, L.; Drakenberg, T. J Biomol Struct Dynam 1991, 10, 333-343.
30. Braunlin, W. H.; Drakenberg, T.; Nordenskiold, L. Biopolymers 1992, 31, 1343-1346.
31. Shui, X.; McFail-Isom, L.; Hu, G. G.; Williams, L. D. Biochemistry 1998, 37, 8341-8355.
32. Chiu, T. K.; Dickerson, R. E. J Mol Biol 2000, 301, 915-945.
33. Kielkopf, C. L.; Ding, S.; Kuhn, P.; Rees, D. C. J Mol Biol 2000, 296, 787-801.
34. Ojwang, J. O.; Grueneberg, D. A.; Loechler, E. L. Cancer Res 1989, 49, 6529-6537.
35. Grueneberg, D. A.; Ojwang, J. O.; Benasutti, M.; Hartman, S.; Loechler, E. L. Cancer Res 1991, 51, 2268-2272.
36. Millard, J. T.; Paucher, S.; Hopkins, P. B. J Am Chem Soc 1990, 112, 2459-2460.
37. Rink, S. M.; Solomon, M. S.; Taylor, M. J.; Rajur, S. B.; McLaughlin, L. W.; Hopkins, P. B. J Am Chem Soc 1993, 115, 2521-2557.
38. Rink, S. M.; Hopkins, P. B. Biochemistry 1995, 34, 1439-1445.
39. Yun-Hua Fan, Y.- H.; Gold, B. J Am Chem Soc 1999, 121, 11942-11946.
40. Rouzina, I.; Bloomfield, V. A. Biophys J 1998, 74, 3152-3164.