The clustering of infected SIV cells in lymphatic tissue

Journal of the American Statistical Association

Volumn 97, Issue 460, 2002, Pages 943-954

  Reilly, Cavan ^a   Schacker, Timothy ^a   Haase, Ashley T ^a   Wietgrefe, Steve ^a   Krason, David ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

Author keywords

Bayesian inference; Cluster analysis; Point processes; Ripley's K function; SIV pathogenesis

Indexed keywords

EID: 0036967709     PISSN: 01621459     EISSN: None     Source Type: Journal    
DOI: 10.1198/016214502388618735     Document Type: Article

References (26)

1. Baddeley, A., and Silverman, B. (1984), "A Cautionary Example for the Use of Second Order Methods for Analyzing Point Patterns," Biometrics, 40, 1089-1094.
2. Banfield, J., and Raftery, A. (1993), "Model-Based Gaussian and Non-Gaussian Clustering," Biometrics, 49, 803-821.
3. Bartlett, M. S. (1964), "The Spectral Analysis of Two-Dimensional Point Processes," Biometrika, 51, 299-311.
4. Belin, T., and Rubin, D. (1995), "A Method for Calibrating False-Match Rates in Record Linkage," Journal of the American Statistical Association, 90, 694-707.
5. Besag, J., and Newell, J. (1991), "The Detection of Clusters in Rare Diseases," Journal of the Royal Statistical Society, Ser. A, 154, 143-155.
6. Box, G., and Tiao, G. (1968), "A Bayesian Approach to Some Outlier Problems," Biometrika, 55, 119-129.
7. Cheynier, R., Hanrichwark, S., Hadida, F., Pelletier, E., Oksenhendler, E., Autran, B., and Wain-Hobson, S. (1994), "HIV and T Cell Expansion in Splenic White Pulps is Accompanied by Infiltration of HIV-1 Specific Cytotoxic T Lymphocytes," Cell, 78, 2705-2714.
8. Cressie, N. (1993), Statistics for Spatial Data, New York: Wiley.
9. Daley, D., and Vere-Jones, D. (1988), Introduction to the Theory of Point Processes, New York: Springer.
10. Gelman, A., Carlin, J., Stern, H., and Rubin, D. (1995), Bayesian Data Analysis, London: Chapman and Hall.
11. Gelman, A., and King, G. (1990), "Estimating the Electoral Consequences of Legislative Redistricting," Journal of the American Statistical Association, 85, 274-282.
12. Gelman, A., and Rubin, D. (1992), "Inference From Iterative Simulation Using Multiple Sequences" (with discussion), Statistical Science, 7, 457-511.
13. Grossman, Z., Feinberg, M., and Paul, W. (1998), "Multiple Modes of Cellular Activation and Virus Transmission in HIV Infection: A Role for Chronically and Latently Infected Cells in Sustaining Viral Replication," Proceedings of the National Academy of Sciences USA, 95, 6314-6319.
14. + T Cell Demographics and Dynamics in Lymphatic Tissues," Annual Review of Immunology, 17, 625-656.
15. Kooijman, S. (1979), "The Description of Point Patterns," in Spatial and Temporal Analysis in Ecology, eds. R. Cormack and J. Ord, Fairland, MD: International Co-operative Publishing House, pp. 305-331.
16. Lawson, A. (1988), "On Tests for Spatial Trend in a Nonhomogeneous Poisson Process," Journal of Applied Statistics, 15, 225-234.
17. MacQueen, J. B. (1967), "Some Methods for Classification and Analysis of Multivariate Observations," in Proceedings of the 5th Berkeley Symposium on Mathematical Statistics and Probability, 1, Berkeley, CA: University of California Press, pp. 281-297.
18. Ogata, Y, and Katsura, K. (1988), "Likelihood Analysis of Spatial Inhomogeneity for Marked Point Patterns," Annals of the Institute of Statistical Mathematics, 40, 29-39.
19. Perelson, A., Neumann, A., Markowitz, M., Leonard, J., and Ho D. (1996), "HIV-1 Dynamics In Vivo: Virion Clearance Rate, Infected Cell Life-Span, and Viral Generation Time," Science, 271, 1582.
20. Reinhart, T., Rogan, M., Amedee, A., Murphey-Corb, M., Rausch, D., Eiden, L., and Hasse, A. T. (1998), "Tracking Members of the Simian Immunodeficiency Virus Delta B670 Quasispecies Population In Vivo at Single-Cell Resolution," Journal of Virology, 72, 113-120.
21. Ripley, B. (1976), "The Second-Order Analysis of Stationary Point Processes," Journal of Applied Probability, 13, 255-266.
22. _ (1988), Statistical Inference for Spatial Processes, New York: Cambridge University Press.
23. Stoyan, D., Kendall, W., and Mecke, J. (1995), Stochastic Geometry and its Applications, New York: Wiley.
24. Tenner-Racz, K., Racz, P., Schmidt, H., Dietrich, M., Kern, P., Louie, A., Gartner, S., and Popovic, M. (1988), "Immunohistochemical, Electron Microscopic and In Situ Hybridization Evidence for the Involvement of Lymphatics in the Spread of HIV-1," AIDS, 2, 299-309.
25. Titterington, D., Smith, A., and Makov, U. (1985), Statistical Analysis of Finite Mixture Distributions, New York: Wiley.
26. + T Cells," Science, 286, 1353-1357.