Differentiation of Phoma foveata from P. Exigua using a RAPD generated PCR-RFLP marker

European Journal of Plant Pathology

Volumn 106, Issue 1, 2000, Pages 67-75

  Macdonald, Janet E ^a   White, George P ^a   Côté, Marie José ^a  

^a CANADIAN FOOD INSPECTION AGENCY   (Canada)

Author keywords

Genetic marker; PCR RFLP; Phoma exigua var. foveata; Polymerase Chain reaction; Potato gangrene; Random amplified polymorphic DNA

Indexed keywords

DNA FRAGMENT; FUNGAL GROWTH; FUNGUS IDENTIFICATION; GENE SEQUENCING; GENETIC MARKER; NUCLEIC ACID ANALYSIS; PHOMA; POLYMERASE CHAIN REACTION; RANDOM AMPLIFIED POLYMORPHIC DNA; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SECONDARY METABOLITE; SEQUENCE ANALYSIS; SPECIES DIFFERENCE;

FUNGUS; IDENTIFICATION METHOD; PATHOGEN; POLYMERASE CHAIN REACTION;

PHOMA EXIGUA; PHOMA FOVEATA;

EID: 0034121594     PISSN: 09291873     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1008795805409     Document Type: Article

References (24)

1. Boerema GH (1967) The Phoma organisms causing gangrene of potatoes. Neth J P1 Path 73: 190-192
2. Boerema GH and Höweler LH (1967) Phoma exigua Desm. and its varieties. Persoonia 5: 15-28
3. Boerema GH (1976) The Phoma species studied in culture by Dr RWG Dennis. Trans Brit Mycol Soc 67: 289-319
4. Boerema GH, Loerakker WM and Hamers MEC (1987) Checklist for scientific names of common parasitic fungi. Supplement Series 2a (additions and corrections). Fungi on field crops: beet and potato; caraway, flax and oilseed poppy. Neth J P1 Path 93: 1-20
5. Boyd AEW (1972) Potato storage diseases. Rev P1 Path 51: 297-319
6. Dhingra OD and Sinclair JB (1985) Culture media and their formulas. In: Basic Plant Pathology Methods (p 302) CRC Press, Boca Raton
7. EPPO (1997) Phoma exigua var.foveata data sheets on quarantine pests. Prepared by CABI and EPPO for the European Union. Quarantine pests for Europe (pp 865-871) University Press, Cambridge
8. Faris-Mokaiesh S, Boccara M, Denis J-B, Derrien A and Spire D (1996) Differentiation of the 'Ascochyta complex' fungi of pea by biochemical and molecular markers. Curr Genet 29: 182-190
9. Garner KJ and Slavicek JM (1996) Identification and characterization of a RAPD-PCR marker for distinguishing Asian and North American gypsy moths. Insect Molec Biol 5: 81-91
10. Keinath AP, Farnham MW and Zitter TA (1995) Morphological, pathological and genetic differentiation of Didymella bryoniae and Phoma spp. isolated from cucurbits. Phytopathology 85: 364-369
11. Malcolmson JF (1958) A consideration of the species of Phoma which parasitize potatoes. Trans Brit Mycol Soc 41: 413-418
12. Möller EM, Bahnweg G, Sandermann H and Geiger HH (1992) A simple and efficient protocol for isolation of high molecular weight DNA from filamentous fungi, fruit bodies, and infected plant tissues. Nucleic Acids Res 20: 6115-6116
13. Montel E, Bridge PD and Sutton BC (1991) An integrated approach to Phoma systematics. Mycopathologia 115: 89-103
14. Mosch WHM and Mooi JC (1975) A chemical method to identify tuber rot in potato caused by Phoma exigua var. foveata. Neth J P1 Path 81: 86-88
15. Mullis KB and Faloona FA (1987) Specific synthesis of DNA in vitro via a polymerase-catalysed chain reaction. Methods Enzymol 155: 335-350
16. Otazü V, Boerema GH, Mooi JC and Salas B (1979) Possible geographical origin of Phoma exigua var. foveata, the principal causal organism of potato gangrene. Potato Res 22: 333-338
17. Quellet T and Seifert KA (1993) Genetic characterization of Fusarium graminearum strains using RAPD and PCR amplification. Phytopathology 83: 1003-1007
18. Paran I and Michelmore TW (1993) Development of reliable PCR-based markers linked to downy mildew resistance in lettuce. Theor Appl Genet 85: 985-993
19. Rollo F, Salvi R and Torchia P (1990) Highly sensitive and fast detection of Phoma tracheiphila by polymerase chain reaction. Appl Microbiol Biotechnol 32: 572-576
20. Saiki RK, Scharf S, Faloona F, Mullis KB, Horn GT, Erlich HA and Arnheim N (1985) Enzymatic amplification of β-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science 230: 1350-1354
21. Sutton BC (1980) The Coelomycetes Fungi Imperfecti with pycnidia acervuli and stromata. Commonwealth Mycological Institute Kew, Surrey, England
22. Welsh J and McClelland M (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res 18: 7213-7218
23. White TJ, Bruns T, Lee S and Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ and White TJ (eds) PCR Protocols (pp 315-322) Academic Press, San Diego
24. Williams JGK, Kubelik AR, Livak KJ, Rafalski JA and Tingey SV (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18: 6531-6535