Megagametophyte-derived linkage maps of white spruce (Picea glauca) based on RAPD, SCAR and ESTP markers

Theoretical and Applied Genetics

Volumn 104, Issue 6-7, 2002, Pages 987-997

  Gosselin, I ^a,b   Zhou, Y ^a   Bousquet, J ^a   Isabel, N ^a,b  

^a UNIVERSITÉ LAVAL   (Canada)

^b LAURENTIAN FORESTRY CENTRE   (Canada)

Author keywords

Codominant markers; Conifers; Genetic linkage map; GMENDEL JOINMAP; MAPMAKER

Indexed keywords

GENE TRANSFER; GENES; STATISTICAL METHODS;

LINKAGE MAPS;

CROPS;

CONIFEROPHYTA; EMBRYOPHYTA; PICEA; PICEA GLAUCA;

EID: 0036950498     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-001-0823-y     Document Type: Article

References (49)

1. Arcade A, Anselin F, Faivre Rampant P, Lesage MC, Pâques LE, Prat D (2000) Application of AFLP, RAPD and ISSR markers to genetic mapping of European and Japanese larch. Theor Appl Genet 100:299-307
2. Binelli G, Bucci G (1994) A genetic linkage map of Picea abies Karst. based on RAPD markers, as a tool in population genetics. Theor Appl Genet 88:283-288
3. Bishop DT, Cannings C, Skolnick M, Williamson JA (1983) The number of polymorphic DNA clones required to map the human genome. In: Weir BS (ed) Statistical Analysis of DNA Sequence Data. Marcel-Dekker, New York, pp 181-200
4. Corriveau A, Beaulieu J, Daoust G (1991) Heritability and genetic correlations of wood characters of Upper Ottawa Valley white spruce populations grown in Quebec. For Chron 67:698-705
5. De Simone M, Morgante M, Lucchin M, Parrini P, Marocco A (1997) A first linkage map of Cichorium intybus L. using one-way pseudo-testeross and PCR-derived markers. Mol Breed 3:415-425
6. Devey ME, Bell JC, Smith DN, Neale DB (1996) A genetic linkage map for Pinus radiata based on RFLP, RAPD, and microsatellite markers. Theor Appl Genet 92:673-679
7. Echt CS, Nelson CD (1997) Linkage mapping and genome length in eastern white pine (Pinus strobus L.). Theor Appl Genet 94:1031-1037
8. Fournier D, Perry DJ, Beaulieu J, Bousquet J, Isabel N (2001) Optimizing expressed sequence tag polymorphisms by single strand conformation polymorphism in spruces. For Genet (in press)
9. Furnier GR, Stine M, MohnCA, Clyde MA (1991) Geographic patterns of variance in allozymes and height growth in white spruce. Can J For Res 21:707-712
10. Gerber S, Rodolphe F (1994) An estimation of the genome length of maritime pine (Pinus pinaster Ait). Theor Appl Genet 88:289-292
11. Grattapaglia D, Sederoff R (1994) Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: Mapping strategy and RAPD markers. Genetics 137: 1121-1137
12. Holloway JL, Knapp SJ (1993) GMENDEL 3.0 Users Guide. Oregon State University, Corvallis
13. Hulbert S, Ilott T, Legg EJ, Lincoln S, Lander E, Michelmore R (1988) Genetic analysis of the fungus Bremia lactucae, using restriction length polymorphism. Genetics 120:947-958
14. Isabel N, Tremblay L, Michaud M, Tremblay FM, Bousquet J (1993) RAPDs as an aid to evaluate the genetic integrity of somatic embryogenesis-derived populations of Picea mariana (Mill.) B.S.P. Theor Appl Genet 86:81-87
15. Isabel N, Beaulieu J, Bousquet J (1995) Complete congruence between gene diversity estimates derived from genotypic data at enzyme and random amplified polymorphic DNA loci in black spruce. Proc Natl Acad Sci USA 92:6369-6373
16. Jaramillo-Correa JP, Beaulieu J, Bousquet J (2001) Constrasting evolutionary forces driving population structure at ESTPs, allozymes and quantitative traits in white spruce. Mol Ecol 10:2729-2740
17. Jermstad KD, Bassoni DL, Wheeler NC, Neale DB (1998) A sex-averaged genetic linkage map in coastal Douglas-fir [Pseudotsuga menziesii (Mirb.) Franco var "menziesii"] based on RFLP and RAPD markers. Theor Appl Genet 97:762-770
18. Jones CJ, Edwards KJ, Castaglione S, Winfield MO, Sala F, van de Wiel C, Bredemeijer G, Vosman B, Matthes M, Daly A, Brettschneider R, Bettini P, Buiatti M, Maestri E, Malcevschi A, Marmiroli N, Aert R, Volckaert G, Rueda J, Linacero R, Vazquez A, Karp A (1997) Reproductibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Mol Breed 3:381-390
19. Kosambi DD (1944) The estimation of map distances from recombination values. Ann Eugen 12:172-175
20. Krutovskii KV, Vollmer SS, Sorensen FC, Adams WT, Knapp SJ, Strauss SH (1998) RAPD genome maps of Douglas-fir. J Hered 89:197-205
21. Kubisiak TL, Nelson CD, Nance WL, Stine M (1996) Comparison of RAPD linkage maps constructed for a single longleaf pine from both haploid and diploid mapping populations. For Genet 3:203-211
22. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-181
23. Lange K, Boehnke M (1982) How many polymorphic marker genes will it take to span the human genome? Am J Hum Genet 34:842-845
24. Lefort F, Echt C, Streiff R, Vendramin GG (1999) Microsatellite sequences: A new generation of molecular markers for forest genetics. For Genet 6:15-20
25. Li P, Beaulieu J, Corriveau A, Bousquet J (1993) Genetic variation in juvenile growth and phenology in a white spruce provenance-progeny test. Silvae Genet 42:52-60
26. Li P, Beaulieu J, Bousquet J (1997) Genetic structure and patterns of genetic variation among populations in eastern white spruce (Picea glauca). Can J For Res 27:189-198
27. Lincoln SE, Daly MJ, Lander ES (1993) Constructing Genetic Linkage Maps with MAPMAKER/EXP Version 3.0: A Tutorial and Reference Manual. Whitehead Institute, M.I.T. Cambridge, Massachusetts
28. Merril CR, Goldman D, Sedman SA, Ebert MH (1981) Ultrasensitive stain for proteins in polyacrylamide gels shows regional variation in cerebrospinal fluid proteins. Science 211:1437-1438
29. Neale DB, Williams CG (1991) Restriction fragment length polymorphism mapping in conifers and applications to forest gentics and tree improvement. Can J For Res 21:545-554
30. Nelson CD, Nance WL, Doudrick RL (1993) A partial genetic linkage map of slash pine (Pinus elliottii Engelm. var. elliottii) based on random amplified polymorphic DNAs. Theor Appl Genet 87:145-151
31. Nelson CD, Kubisiak TL, Stine M, Nance WL (1994) A genetic linkage map of longleaf pine (Pinus palustris Mill.) based on random amplified polymorphic DNAs. J Hered 85:433-439
32. Paglia GP, Olivieri AM, Morgante M (1998) Towards second-generation STS (sequence-tagged sites) linkage maps in conifers: A genetic map of Norway spruce (Picea abies K.). Mol Gen Genet 258:466-478
33. Paran I, Michelmore RW (1993) Development of reliable PCR-based markers linked to downy mildew resistance genes in lettuce. Theor Appl Genet 85:985-993
34. Perry DJ, Bousquet J (1998a) Sequence-tagged-site (STS) markers of arbitrary genes: Development, characterization and analysis of linkage in black spruce. Genetics 149:1089-1098
35. Perry DJ, Bousquet J (1998b) Sequence-tagged-site (STS) markers of arbitrary genes: The utility of black spruce-derived STS primers in other conifers. Theor Appl Genet 97:735-743
36. Perry DJ, Isabel N, Bousquet J (1999) Sequence-tagged-site (STS) markers of arbitrary genes: The amount and nature of variation revealed in Norway spruce. Heredity 83:239-248
37. Plomion C, O'Malley DM, Durel CE (1995) Genomic analysis in maritime pine (Pinus pinaster). Comparison of two RAPD maps using selfed and open-pollinated seeds of the same individual. Theor Appl Genet 90:1028-1034
38. Qi X, Stam P, Lindhout P (1996) Comparison and integration of four barley genetic maps. Genome 39:379-394
39. Scotti I, Troggio M, Soranzo N, Vendramin GG, Bucci G (1998) A new set of PCR-based, locus-specific markers for Picea abies (L.) Karst. Mol Ecol 7:789-792
40. Sewell MM, Sherman BK, Neale DB (1999) A consensus map for loblolly pine (Pinus taeda L.). I. Construction and integration of individual linkage maps from two outbred three-generation pedigrees. Genetics 151:321-330
41. Skov E, Wellendorf H (1998) A partial linkage map of Picea abies clone V6470 based on recombination of RAPD-markers in haploid megagametophytes. Silvae Genet 47:273-282
42. Stam P (1993) Construction of integrated genetic linkage maps by means of a new computer package: JOINMAP. Plant J 3:739-744
43. Stam P, van Ooijen JW (1995) JOINMAP Version 2.0: Software for the Calculation of Genetic Linkage Maps. DLO-Center for Plant Breeding and Reproduction Research, Wageningen, The Netherlands
44. Temesgen B, Brown GR, Harry DE, Kinlaw CS, Sewell MM, Neale DB (2001) Genetic mapping of expressed sequence tag polymorphism (ESTP) markers in loblolly Pine (Pinus taeda L.). Theor Appl Genet 102:664-675
45. Torres AM, Weeden NF, Martin A (1993) Linkage among isozyme, RFLP and RAPD markers in Vicia faba. Theor Appl Genet 85:937-945
46. Travis SE, Ritland K, Whitham TG, Keim P (1998) A genetic linkage map of Pinyon pine (Pinus edulis) based on amplified fragment length polymorphisms. Theor Appl Genet 97:871-880
47. Tulsieram LK, Glaubitz JC, Kiss G, Carlson JE (1992) Single tree genetic linkage mapping in conifers using haploid DNA from megagametophytes. Bio/Technology 10:686-690
48. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: A new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
49. Wu RL, Han YF, Hu JJ, Fang JJ, Li L, Li ML, Zeng Z-B (2000) An integrated genetic map of Populus deltoides based on amplified fragment length polymorphisms. Theor Appl Genet 100:1249-1256