Cloning and relational analysis of 15 novel fungal endoglucanases from family 12 glycosyl hydrolase

Current Genetics

Volumn 41, Issue 2, 2002, Pages 89-98

  Goedegebuur, Frits ^a   Fowler, Timothy ^b   Phillips, Jay ^b,c   van der Kley, Pim ^a   van Solingen, Piet ^a   Dankmeyer, Lydia ^a   Power, Scott D ^b  

^a Genencor International BV   (Netherlands)

^b GENENCOR INTERNATIONAL INC   (United States)

^c EPIGENOMICS AG   (Germany)

Author keywords

Cellulases; Endoglucanases; Family 12; Phylogenicity

Indexed keywords

AMINO ACID; BETA GLUCOSIDASE; CELLULASE; CELLULOSE 1,4 BETA CELLOBIOSIDASE; GLUCAN SYNTHASE; GLYCOSIDASE;

CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME SYNTHESIS; FUNGAL GENETICS; FUNGAL STRAIN; GENETIC ANALYSIS; GENETIC SCREENING; GENETIC VARIABILITY; MOLECULAR CLONING; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; PECTOBACTERIUM CAROTOVORUM; PHYLOGENETIC TREE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; REVIEW; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STREPTOMYCES; THERMOPHILIC BACTERIUM;

AMINO ACID MOTIFS; AMINO ACID SEQUENCE; CELLULASE; CHROMOSOME WALKING; CLONING, MOLECULAR; CONSENSUS SEQUENCE; DNA, FUNGAL; FUNGI; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID;

BACTERIA (MICROORGANISMS); ERWINIA; FUNGI; MYXOGASTRIA; NEGIBACTERIA; PECTOBACTERIUM CAROTOVORUM; RHODOTHERMUS MARINUS; STREPTOMYCES;

EID: 0036944063     PISSN: 01728083     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00294-002-0290-2     Document Type: Review

References (41)

1. Ballance DJ, Buxton FP, Turner G (1983) Transformation of Aspergillus nidulans by the orotidine-5′-phosphate decarboxylase gene of Neurospora crassa. Biochem Biophys Res Commun 112:284-289
2. Bayer EA, Moraq E, Lamed R (1994) The cellulosome - a treasure trove for biotechnology. Trends Biotechnol 12:379-386
3. Béguin P, Aubert JP (1994) The biological degradation of cellulose. FEMS Microbiol Rev 13:25-58
4. Cao Q-N, Stubbs M, Ngo KQP, Ward M, Cunningham A, Pai EF, Tu G-C, Hofmann T (2000) Penicillopepsin-JT2 a recombinant enzyme from Penicillium janthinellum and contribution of a hydrogen bond in subsite S3 to kcat. Protein Sci 9:991-1001
5. Clarkson KA, Weiss GL, Larenas EA (1992) Detergent compositions containing substantially pure EGIII cellulase. Patent WO 92/06184
6. Dalboge H, Heldt-Hansen HP, Rasmussen G (1993) A method of cloning proteins in yeast and cellulase from Humicola insolens. Patent WO 93/11249
7. Dhawan RR, Schoen TJ, Beebe DC (1997) Isolation and expression of homeobox genes from the embryonic chicken eye. Mol Vis 3:7
8. Dumas Milne Edwards JP, Ravassard P, Icard-Liepkalns C, Mallet J (1995) Cloning cDNAs of multigene families. In: McPherson MJ, Hames BD, Taylor GR (eds) PCR2: a practical approach. Oxford University Press, New York, pp 111-118
9. Gilkes NR, Henrissat B, Kilburn DG, Miller RC Jr, Warren RA (1991) Domains in microbial β-1,4-glycanases: sequence conservation function and enzyme families. Microb Rev 55:303-315
10. Halldórsdóttir S, Thórólfsdóttir ET, Spilliaert R, Hohansson M, Thorbjarnardóttir SH, Palsdottir A, Hreggvidsson GO, Kristjánsson JK, Holst O, Eggertsson G (1998) Cloning sequencing and overexpression of a Rhodothermus marinus gene encoding a thermostable cellulase of glycosyl hydrolase family 12. Appl Microbiol Biotechnol 49:277-284
11. Henriksson G, Nutt A, Henriksson H, Petterson B, Stahlberg J, Johansson G, Pettersson G (1999) Endoglucanase 28 (cell2A) a new Phanerochaete chrysosporium cellulase. Eur J Biochem 259:88-95
12. Henrissat B (1993) Hidden domains and active site residues in β-glycanase-encoding gene sequences. Gene 125:199-204
13. Henrissat B, Bairoch A (1993) New families in the classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem J 293:781-788
14. Henrissat B, Davies G (1997) Structural and sequence-based classification of glycoside hydrolases. Curr Opin Struct Biol 7:637-644
15. Henrissat B. Davies GJ (2000) Glycoside hydrolase and glycosyltransferase families modules and implications for genomics. Plant Physiol 124:1515-1519
16. Hogg D, Woo EJ, Bolam DN, McKie VA, Gilbert HJ, Pickersgill RW (2001) Crystal structure of mannanase 26A from Pseudomonas cellulose and analysis of residues involved in substrate binding. J Biol Chem 276:31186-31192
17. Hynes MJ, Corrick CM, King JA (1983) Isolation of genomic clones containing the amdS gene of Aspergillus nidulans and their use in the analysis of structural and regulatory mutants. Mol Cell Biol 3:1430-1439
18. Jia J, Dyer PS, Buswell JA, Peberdy JF (1999) Cloning the cbhI and cbhII genes involved in cellulose utilisation by the straw mushroom Volvariella volvacea. Mol Gen Genet 261:985-993
19. Lange NK (1993) Application of cellulases in the textile industry. In: Souminen P, Reinikainen T (eds) Proc 2nd TRICEL Symp Trichoderma reesei cellulases and other hydrolases. Foundation of Biotechnical and Industrial Fermentation Research, Espoo, pp 263-272
20. Maurer KH (1997) Development of new cellulases. In: Ee JH van, Misset O, Baas EJ (eds) Enzymes in detergency. Dekker, New York, pp 175-202
21. Mitchell DB, Vogel K, Weimann BJ, Pasamontes L, Loon AP van (1997) The phytase subfamily of histidine acid phosphatases: isolation of genes for two novel phytases from the fungi Aspergillus terreus and Myceliophthora thermophila. Microbiology 143:245-252
22. Nidetzky B, Steiner W, Claeyssens M (1994a) Cellulose hydrolysis by the cellulases from Trichoderma reesei: adsorptions of two cellobiohydrolases two endocellulases and their core proteins on filter paper and their relation to hydrolysis. Biochem J 303:817-823
23. Nidetzky B, Steiner W, Hayn M, Claeyssens M (1994b) Cellulose hydrolysis by the cellulases from Trichoderma reesei: a new model for synergistic interaction. Biochem J 298:705-710
24. Ooi T, Shinmyo A, Okada H, Hara S, Ikenaka T, Murao S, Arai M (1990) Cloning and sequence analysis of a cDNA for cellulase (FI-CMCase) from Aspergillus aculeatus. Curr Genet 18:217-222
25. Ozturk ZN, Ogel ZB (2000) PCR with degenerate primers amplifies a subgenomic DNA fragment from the endoglucanase gene(s) of Torula thermophila, a thermophilic fungus. Mol Biotechnol 16:109-115
26. Preston GM (1997) Cloning gene family members using PCR with degenerate oligonucleotide primer. In: White BA (ed) Methods in molecular biology. (PCR cloning protocols, vol 67) Humana Press, Totowa, pp 433-449
27. Roberge M, Shareck F, Morosoli R, Kleupfel D, Dupont C (1999) Characterization of active-site aromatic residues in xylanase A from Streptomyces lividans. Protein Eng 12:251-257
28. Saarilahti HT, Henrissat B, Palva ET (1990) CelS: a novel endoglucanase identified from Erwinia carotovora subsp. carotovora. Gene 90:9-14
29. Sakamoto S, Tamura G, Ito K, Ishikawa T, Iwano K, Nishiya N (1995) Cloning and sequencing of cellulase cDNA from Aspergillus kawachii and its expression in Saccharomyces cerevisiae. Curr Genet 27:435-439
30. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
31. Sandgren M, Shaw A, Ropp TH, Wu S, Bott R, Cameron AD, Ståhlberg J, Mitchinson C, Jones A (2000) The X-ray crystal structure of the Trichoderma reesei family 12 endoglucanase 3 (Cel12A) at 19 Å resolution. J Mol Biol 308:295-310
32. Schulein M (1997) Enzymatic properties of cellulases from Humicola insolens. J Bacteriol 57:71-81
33. Sheppard PO, Grant FJ, Oort PJ, Sprecher CA, Foster DC, Hagen FS, Upshall A, McKnight GL, O'Hara PJ (1994) The use of conserved cellulase family-specific sequences to clone cellulase homologue cDNAs from Fusarium oxysporum. Gene 150:163-167
34. Ståhlberg J (1991) Functional organization of cellulases from Trichoderma reesei. (PhD thesis) In: Uppsala University (ed) Acta Universitatis Upsaliensis. (Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science) Uppsala University, Uppsala, pp 344-345
35. Sulzenbacher G, Mackenzie LF, Wilson KS, Withers SG, Dupont C, Davies GJ (1999) The crystal structure of a 2-fluorocellotriosyl complex of the Streptomyces lividans endoglucanase CelB2 at 12 Å resolution. Biochemistry 38:4826-4833
36. Törrönen A, Kubicek CP, Henrissat B (1993) Amino acid sequence similarities between low molecular weight endo-1,2-β-xylanases and family H cellulases revealed by clustering analysis. FEBS Lett 321:135-139
37. Törrönen A, Harkki A, Rouvinen J (1994) Three-dimensional structure of endo-1,4-β-xylanase II from Trichoderma reesei: two conformational states in the active site. EMBO J 13:2493-2501
38. Ulker A, Sprey B 1990 Characterization of an unglycosylated low molecular weight 1,4-β-glucan-glucanohydrolase of Trichoderma reesei. FEMS Microbiol Lett 57:215-219
39. Unkles SE (1992) Gene organization in industrial filamentous fungi. In: Kinghorn JR, Turner G (eds) Applied molecular genetics of filamentous fungi. Blackie, Glasgow, pp 28-53
40. Ward M, Wilson LJ, Kodama KH (1993a) Use of Aspergillus overproducing mutants cured for integrated plasmid to overproduce heterologous proteins Appl Microbiol Biotechnol 39:738-743
41. Ward M, Wu S, Dauberman J, Larenas E, Bower B, Rey M, Clarkson K, Bott R (1993b) Cloning sequencing and preliminary structural analysis of a small high pI endoglucanase (EGIII) from Trichoderma reesei. In: Souminen P, Reinikainen T (eds) Proc 2nd TRICEL Symp Trichoderma reesei cellulases and other hydrolases. Foundation of Biotechnical and Industrial Fermentation Research, Espoo, pp 153-158