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Journal of Biological Inorganic Chemistry

Volumn 7, Issue 3, 2002, Pages 284-298

A theoretical study of the mechanism for peptide hydrolysis by thermolysin

(3) Pelmenschikov, Vladimir a Blomberg, Margareta R A a Siegbahn, Per E M a

a STOCKHOLM UNIVERSITY (Sweden)

Author keywords

Catalytic mechanism; Density functional theory; Peptide hydrolysis; Thermolysin

Indexed keywords

CARBOXYLIC ACID; THERMOLYSIN;

ARTICLE; CALCULATION; CHEMICAL ANALYSIS; COMPLEX FORMATION; CORRELATION ANALYSIS; CRYSTAL STRUCTURE; ENERGY; ENZYME INHIBITION; ENZYME SUBSTRATE COMPLEX; PRIORITY JOURNAL; PROTEIN HYDROLYSIS; PROTEIN STRUCTURE; PROTON TRANSPORT; SITE DIRECTED MUTAGENESIS; STRUCTURE ANALYSIS; THERMAL ANALYSIS; TRANSPORT KINETICS; X RAY CRYSTALLOGRAPHY;

CATALYSIS; CATALYTIC DOMAIN; HYDROLYSIS; MODELS, CHEMICAL; MODELS, MOLECULAR; PEPTIDES; THERMODYNAMICS; THERMOLYSIN; WATER;

EID: 0036932975 PISSN: 09498257 EISSN: None Source Type: Journal
DOI: 10.1007/s007750100295 Document Type: Article

Times cited : (132)

References (56)

1
- 7744244599
- Lipscomb WN, Strater N (1996) Chem Rev 96:2375-2433
- (1996) Chem Rev , vol.96 , pp. 2375-2433
- Lipscomb, W.N.¹ Strater, N.²

2
- 0028382520
- Blundell TL (1994) Nat Struct Biol 1:73-75
- (1994) Nat Struct Biol , vol.1 , pp. 73-75
- Blundell, T.L.¹

3
- 0027244532
- Roques BP (1993) Biochem Soc Trans 21:678-685
- (1993) Biochem Soc Trans , vol.21 , pp. 678-685
- Roques, B.P.¹

4
- 0001094555
- Endo S (1962) J Ferment Technol 40:346
- (1962) J Ferment Technol , vol.40 , pp. 346
- Endo, S.¹

5
- 0013936343
- Matsubara H, Sasaki R, Singer A, Jukes TH (1966) Arch Biochem Biophys 115:324-331
- (1966) Arch Biochem Biophys , vol.115 , pp. 324-331
- Matsubara, H.¹ Sasaki, R.² Singer, A.³ Jukes, T.H.⁴

6
- 0014828815
- Morihara K, Tsuzuki H (1970) Eur J Biochem 15:374
- (1970) Eur J Biochem , vol.15 , pp. 374
- Morihara, K.¹ Tsuzuki, H.²

7
- 0012359262
- Maia HLS (ed). Escom, Leiden
- Eichhorn U, Bommarius AS, Drauz K, Jakubke H-D (1995) In: Maia HLS (ed) Peptides 1994. Escom, Leiden, pp 226-227
- (1995) Peptides 1994 , pp. 226-227
- Eichhorn, U.¹ Bommarius, A.S.² Drauz, K.³ Jakubke, H.-D.⁴

8
- 0031686839
- Rao MB, Tanksale AM, Ghatge MS, Deshpande VV (1998) Microbiology 62:597-635
- (1998) Microbiology , vol.62 , pp. 597-635
- Rao, M.B.¹ Tanksale, A.M.² Ghatge, M.S.³ Deshpande, V.V.⁴

9
- 0002624470
- Matthews BW, Jansonius JN, Colman PM, Schoenborn BP, Dupourque D (1972) Nature 238:37
- (1972) Nature , vol.238 , pp. 37
- Matthews, B.W.¹ Jansonius, J.N.² Colman, P.M.³ Schoenborn, B.P.⁴ Dupourque, D.⁵

10
- 49149124735
- Matthews BW, Colman PM, Jansonius JN, Titani K, Walsh KA, Neurath H (1972) Nature 238:41
- (1972) Nature , vol.238 , pp. 41
- Matthews, B.W.¹ Colman, P.M.² Jansonius, J.N.³ Titani, K.⁴ Walsh, K.A.⁵ Neurath, H.⁶

11
- 0015506348
- Colman PM, Jansonius JN, Matthews BW (1972) J Mol Biol 70:701
- (1972) J Mol Biol , vol.70 , pp. 701
- Colman, P.M.¹ Jansonius, J.N.² Matthews, B.W.³

12
- 0025060799
- Vallee BL, Auld DS (1990) Proc Natl Acad Sci USA 87:220-224
- (1990) Proc Natl Acad Sci USA , vol.87 , pp. 220-224
- Vallee, B.L.¹ Auld, D.S.²

13
- 0038452402
- Rulïšek L, Vondräšek JJ (1998) Inorg Biochem 71:115-127
- (1998) Inorg Biochem , vol.71 , pp. 115-127
- Rulïšek, L.¹ Vondräšek, J.J.²

14
- 0032464349
- Alberts JL, Nadassy K, Wodak SJ (1998) Protein Sci 7:1700-1716
- (1998) Protein Sci , vol.7 , pp. 1700-1716
- Alberts, J.L.¹ Nadassy, K.² Wodak, S.J.³

15
- 0001938492
- Siegel H (ed). Dekker, New York
- Galdes A, Vallee BL (1983) In: Siegel H (ed) Metal ions in biological systems, vol 15. Dekker, New York, pp 6-7
- (1983) Metal Ions in Biological Systems , vol.15 , pp. 6-7
- Galdes, A.¹ Vallee, B.L.²

16
- 0028892387
- Holland DR, Hausrath AC, Juers D, Matthews BW (1995) Protein Sci 4:1955-1965
- (1995) Protein Sci , vol.4 , pp. 1955-1965
- Holland, D.R.¹ Hausrath, A.C.² Juers, D.³ Matthews, B.W.⁴

17
- 0024571514
- Toma S, Campagnoli S, De Gregoris E, Gianna R, Margarit R, Zamai M, Grandi G (1989) Protein Eng 2:359-364
- (1989) Protein Eng , vol.2 , pp. 359-364
- Toma, S.¹ Campagnoli, S.² De Gregoris, E.³ Gianna, R.⁴ Margarit, R.⁵ Zamai, M.⁶ Grandi, G.⁷

18
- 0026470227
- Kubo M, Mitsuda Y, Takagi M, Imanaka T (1992) Appl Environ Microbiol 58:3779-3783
- (1992) Appl Environ Microbiol , vol.58 , pp. 3779-3783
- Kubo, M.¹ Mitsuda, Y.² Takagi, M.³ Imanaka, T.⁴

19
- 0029009772
- Beaumont A, O'Donohue MJ, Paredes N, Rousselet N, Assicot M, Bohuon C, Fournië-Zaluski M-C, Roques BP (1995) J Biol Chem 270:16803-16808
- (1995) J Biol Chem , vol.270 , pp. 16803-16808
- Beaumont, A.¹ O'Donohue, M.J.² Paredes, N.³ Rousselet, N.⁴ Assicot, M.⁵ Bohuon, C.⁶ Fournië-Zaluski, M.-C.⁷ Roques, B.P.⁸

20
- 0031767267
- Marie-Claire C, Ruffet E, Tiraboschi G, Fournië-Zaluski M-C (1998) FEBS Lett 438:215-219
- (1998) FEBS Lett , vol.438 , pp. 215-219
- Marie-Claire, C.¹ Ruffet, E.² Tiraboschi, G.³ Fournië-Zaluski, M.-C.⁴

21
- 0030656495
- Marie-Claire C, Ruffet E, Antonczak S, Beaumont A, O'Donohue M, Roques BP, Fournië-Zaluski M-C (1997) Biochemistry 36:13938-13945
- (1997) Biochemistry , vol.36 , pp. 13938-13945
- Marie-Claire, C.¹ Ruffet, E.² Antonczak, S.³ Beaumont, A.⁴ O'Donohue, M.⁵ Roques, B.P.⁶ Fournië-Zaluski, M.-C.⁷

22
- 0032515911
- Veltman OR, Eijsink VGH, Vriend G, De Kreij A, Venema G, Van den Burg B (1998) Biochemistry 37:5305-5311
- (1998) Biochemistry , vol.37 , pp. 5305-5311
- Veltman, O.R.¹ Eijsink, V.G.H.² Vriend, G.³ De Kreij, A.⁴ Venema, G.⁵ Van den Burg, B.⁶

23
- 0016766118
- Pangburn MK, Walsh KA (1975) Biochemistry 14:4050-4054
- (1975) Biochemistry , vol.14 , pp. 4050-4054
- Pangburn, M.K.¹ Walsh, K.A.²

24
- 0017395121
- Kester WR, Matthews BM (1977) Biochemistry 16:2506-2516
- (1977) Biochemistry , vol.16 , pp. 2506-2516
- Kester, W.R.¹ Matthews, B.M.²

25
- 0019887627
- Holmes MA, Matthews BW (1981) Biochemistry 20:6912-6920
- (1981) Biochemistry , vol.20 , pp. 6912-6920
- Holmes, M.A.¹ Matthews, B.W.²

26
- 0021744255
- Hangauer DG, Monzingo AF, Matthews BW (1984) Biochemistry 23:5730-5741
- (1984) Biochemistry , vol.23 , pp. 5730-5741
- Hangauer, D.G.¹ Monzingo, A.F.² Matthews, B.W.³

27
- 0023667724
- Holden HM, Tronrud DE, Monzingo AF, Weaver LH, Matthews BW (1987) Biochemistry 26:8542-8553
- (1987) Biochemistry , vol.26 , pp. 8542-8553
- Holden, H.M.¹ Tronrud, D.E.² Monzingo, A.F.³ Weaver, L.H.⁴ Matthews, B.W.⁵

28
- 33845280830
- Matthews BW (1988) Acc Chem Res 21:333-340
- (1988) Acc Chem Res , vol.21 , pp. 333-340
- Matthews, B.W.¹

29
- 0023667707
- Bartlett PA, Marlowe CK (1987) Biochemistry 26:8553-8561
- (1987) Biochemistry , vol.26 , pp. 8553-8561
- Bartlett, P.A.¹ Marlowe, C.K.²

30
- 0028169317
- Mock WL, Aksamavati M (1994) Biochem J 302:57
- (1994) Biochem J , vol.302 , pp. 57
- Mock, W.L.¹ Aksamavati, M.²

31
- 0029896448
- Mock WL, Stanford DJ (1996) Biochemistry 35:7369
- (1996) Biochemistry , vol.35 , pp. 7369
- Mock, W.L.¹ Stanford, D.J.²

32
- 0032475433
- Antonczak S, Monard G, Ruiz-Lopez MF, Rivail J-L (1998) J Am Chem Soc 120:8825-8833
- (1998) J Am Chem Soc , vol.120 , pp. 8825-8833
- Antonczak, S.¹ Monard, G.² Ruiz-Lopez, M.F.³ Rivail, J.-L.⁴

33
- 0000264059
- Antonczak S, Monard G, Ruiz-Lopez MF, Rivail J-L (2000) J Mol Model 6:527-538
- (2000) J Mol Model , vol.6 , pp. 527-538
- Antonczak, S.¹ Monard, G.² Ruiz-Lopez, M.F.³ Rivail, J.-L.⁴

34
- 4243553426
- Becke AD (1988) Phys Rev A 38:3098
- (1988) Phys Rev A , vol.38 , pp. 3098
- Becke, A.D.¹

35
- 34250817103
- Becke AD (1993) J Chem Phys 98:1372
- (1993) J Chem Phys , vol.98 , pp. 1372
- Becke, A.D.¹

36
- 0000189651
- Becke AD (1993) J Chem Phys 98:5648
- (1993) J Chem Phys , vol.98 , pp. 5648
- Becke, A.D.¹

37
- 0004133516
- Gaussian, Pittsburgh
- Frisch MJ, Trucks GW, Schlegel HB, Gill PMW, Johnson BG, Robb MA, Cheeseman JR, Keith T, Petersson GA, Montgomery JA, Raghavachari K, Al-Laham MA, Zakrzewski VG, Ortiz JV, Foresman JB, Cioslowski J, Stefanov BB, Nanayakkara A, Challacombe M, Peng CY, Ayala PY, Chen W, Wong MW, Andres JL, Replogle ES, Gomperts R, Martin RL, Fox DJ, Binkley JS, Defrees DJ, Baker J, Stewart JP, Head-Gordon M, Gonzalez C, Pople JA (1995) Gaussian 94, revision B.2. Gaussian, Pittsburgh
- (1995) Gaussian 94, Revision B.2
- Frisch, M.J.¹ Trucks, G.W.² Schlegel, H.B.³ Gill, P.M.W.⁴ Johnson, B.G.⁵ Robb, M.A.⁶ Cheeseman, J.R.⁷ Keith, T.⁸ Petersson, G.A.⁹ Montgomery, J.A.¹⁰ Raghavachari, K.¹¹ Al-Laham, M.A.¹² Zakrzewski, V.G.¹³ Ortiz, J.V.¹⁴ Foresman, J.B.¹⁵ Cioslowski, J.¹⁶ Stefanov, B.B.¹⁷ Nanayakkara, A.¹⁸ Challacombe, M.¹⁹ Peng, C.Y.²⁰ more..

38
- 27344448074
- Hay PJ, Wadt WR (1988) J Chem Phys 82:299
- (1988) J Chem Phys , vol.82 , pp. 299
- Hay, P.J.¹ Wadt, W.R.²

39
- 0001869942
- Schaefer HF III (ed). Plenum, New York
- Dunning J, Hay PJ (1976) In: Schaefer HF III (ed) Modern theoretical chemistry, vol 3. Plenum, New York, p 1
- (1976) Modern Theoretical Chemistry , vol.3 , pp. 1
- Dunning, J.¹ Hay, P.J.²

40
- 33750614386
- Gonzales C, Schlegel HB (1990) J Phys Chem 94:5523
- (1990) J Phys Chem , vol.94 , pp. 5523
- Gonzales, C.¹ Schlegel, H.B.²

41
- 43949151212
- Beapak MJ, Robb MA, Schlegel HB (1994) Chem Phys Lett 223:269
- (1994) Chem Phys Lett , vol.223 , pp. 269
- Beapak, M.J.¹ Robb, M.A.² Schlegel, H.B.³

42
- 0004209265
- Harper and Row, New York
- McQuarrie DA (1973) Statistical thermodynamics. Harper and Row, New York
- (1973) Statistical Thermodynamics
- McQuarrie, D.A.¹

43
- 0000978794
- Wiberg KB, Rablen PR, Rush DJ, Keith TA (1995) J Am Chem Soc 117:4261
- (1995) J Am Chem Soc , vol.117 , pp. 4261
- Wiberg, K.B.¹ Rablen, P.R.² Rush, D.J.³ Keith, T.A.⁴

44
- 33751155589
- Wiberg KB, Keith TA, Frisch MJ, Murcko M (1995) J Phys Chem 99:9072
- (1995) J Phys Chem , vol.99 , pp. 9072
- Wiberg, K.B.¹ Keith, T.A.² Frisch, M.J.³ Murcko, M.⁴

45
- 0001363007
- Siegbahn PEM, Blomberg MRA (2000) Chem Rev 100:421-437
- (2000) Chem Rev , vol.100 , pp. 421-437
- Siegbahn, P.E.M.¹ Blomberg, M.R.A.²

46
- 0032575264
- Kudryashova EV, Mozhaev VV, Balny C (1998) Biochim Biophys Acta 1386:199-210
- (1998) Biochim Biophys Acta , vol.1386 , pp. 199-210
- Kudryashova, E.V.¹ Mozhaev, V.V.² Balny, C.³

47
- 0000467270
- Warshel A (1981) Acc Chem Res 14:284
- (1981) Acc Chem Res , vol.14 , pp. 284
- Warshel, A.¹

48
- 0026489329
- Holland DR, Tronrud DE, Pley HW, Flaherty KM, Stark W, Jansonius JN, McKay DB, Matthews BW (1992) Biochemistry 21:11310
- (1992) Biochemistry , vol.21 , pp. 11310
- Holland, D.R.¹ Tronrud, D.E.² Pley, H.W.³ Flaherty, K.M.⁴ Stark, W.⁵ Jansonius, J.N.⁶ McKay, D.B.⁷ Matthews, B.W.⁸

49
- 0000747330
- Siegbahn PEM (1996) J Comput Chem 17:1099-1107
- (1996) J Comput Chem , vol.17 , pp. 1099-1107
- Siegbahn, P.E.M.¹

50
- 0020130996
- Kunugi S, Hirohara H, Ise N (1982) Eur J Biochem 124:157-163
- (1982) Eur J Biochem , vol.124 , pp. 157-163
- Kunugi, S.¹ Hirohara, H.² Ise, N.³

51
- 0034415261
- Prabhakar R, Blomberg MRA, Siegbahn PEM (2000) Theor Chem Acc 104:461-470
- (2000) Theor Chem Acc , vol.104 , pp. 461-470
- Prabhakar, R.¹ Blomberg, M.R.A.² Siegbahn, P.E.M.³

52
- 0031730185
- Becker A, Schlichting I, Kabsch W, Groche D, Schultz S, Wagner AFV (1998) Nat Struct Biol 5:1053-1058
- (1998) Nat Struct Biol , vol.5 , pp. 1053-1058
- Becker, A.¹ Schlichting, I.² Kabsch, W.³ Groche, D.⁴ Schultz, S.⁵ Wagner, A.F.V.⁶

53
- 37049093939
- Oyama K, Kihara K, Nonaka Y (1981) J Chem Soc Perkin Trans 2:356
- (1981) J Chem Soc Perkin Trans , vol.2 , pp. 356
- Oyama, K.¹ Kihara, K.² Nonaka, Y.³

54
- 0028822917
- Williams RJP (1995) Eur J Biochem 234:363-381
- (1995) Eur J Biochem , vol.234 , pp. 363-381
- Williams, R.J.P.¹

55
- 0031646313
- Pavlov M, Siegbahn PEM, Sandström M (1998) J Phys Chem A 102:219
- (1998) J Phys Chem A , vol.102 , pp. 219
- Pavlov, M.¹ Siegbahn, P.E.M.² Sandström, M.³

56
- 0000659057
- Hartmann M, Clark T, van Eldik R (1996) J Mol Model 2:354-357
- (1996) J Mol Model , vol.2 , pp. 354-357
- Hartmann, M.¹ Clark, T.² Van Eldik, R.³

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